diff --git a/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferModelTest.h b/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferModelTest.h
index 1235f02c413e..aeab12be3bc6 100644
--- a/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferModelTest.h
+++ b/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferModelTest.h
@@ -310,9 +310,7 @@ class ISISEnergyTransferModelTest : public CxxTest::TestSuite {
     TS_ASSERT_EQUALS(outputName, "instrument1234, 1235_analyser_reflection_Reduced");
   }
 
-  void testRunIETAlgorithm() {
-    MantidQt::API::BatchAlgorithmRunner *batch = new MantidQt::API::BatchAlgorithmRunner(nullptr);
-
+  void test_energyTransferAlgorithm() {
     IETInputData inputData("input_workspace1, input_workspace2", "input_workspace1, input_workspace2", true, false,
                            true, "calibration_workspace");
     IETConversionData conversionData(1.0, 1, 2);
@@ -327,43 +325,18 @@ class ISISEnergyTransferModelTest : public CxxTest::TestSuite {
 
     InstrumentData instData("instrument", "analyser", "reflection");
 
-    m_model->runIETAlgorithm(batch, instData, runData);
-
-    // Wait for the algorithm to finish
-    std::this_thread::sleep_for(std::chrono::seconds(1));
-
-    TS_ASSERT_EQUALS(AnalysisDataService::Instance().doesExist("outputWS"), true);
-    if (AnalysisDataService::Instance().doesExist("outputWS")) {
-      ITableWorkspace_sptr outputWS =
-          Mantid::API::AnalysisDataService::Instance().retrieveWS<Mantid::DataObjects::TableWorkspace>("outputWS");
-
-      TS_ASSERT_EQUALS(outputWS->rowCount(), 1);
-      TS_ASSERT_EQUALS(outputWS->columnCount(), 18);
-
-      TS_ASSERT_EQUALS(outputWS->getColumn(0)->name(), "Instrument");
-      TS_ASSERT_EQUALS(outputWS->getColumn(1)->name(), "Analyser");
-      TS_ASSERT_EQUALS(outputWS->getColumn(2)->name(), "Reflection");
+    auto configuredAlg = m_model->energyTransferAlgorithm(instData, runData);
+    auto &runtimeProps = configuredAlg->getAlgorithmRuntimeProps();
+    TS_ASSERT_EQUALS("instrument", runtimeProps.getPropertyValue("Instrument"));
+    TS_ASSERT_EQUALS("analyser", runtimeProps.getPropertyValue("Analyser"));
+    TS_ASSERT_EQUALS("reflection", runtimeProps.getPropertyValue("Reflection"));
 
-      TS_ASSERT_EQUALS(outputWS->getColumn(3)->name(), "InputFiles");
-      TS_ASSERT_EQUALS(outputWS->getColumn(4)->name(), "SumFiles");
-      TS_ASSERT_EQUALS(outputWS->getColumn(5)->name(), "LoadLogFiles");
-      TS_ASSERT_EQUALS(outputWS->getColumn(6)->name(), "CalibrationWorkspace");
+    TS_ASSERT_EQUALS("input_workspace1, input_workspace2", runtimeProps.getPropertyValue("InputFiles"));
+    TS_ASSERT_EQUALS("1", runtimeProps.getPropertyValue("SumFiles"));
+    TS_ASSERT_EQUALS("0", runtimeProps.getPropertyValue("LoadLogFiles"));
 
-      TS_ASSERT_EQUALS(outputWS->getColumn(7)->name(), "Efixed");
-      TS_ASSERT_EQUALS(outputWS->getColumn(8)->name(), "SpectraRange");
-      TS_ASSERT_EQUALS(outputWS->getColumn(9)->name(), "BackgroundRange");
-      TS_ASSERT_EQUALS(outputWS->getColumn(10)->name(), "RebinString");
-
-      TS_ASSERT_EQUALS(outputWS->getColumn(11)->name(), "DetailedBalance");
-
-      TS_ASSERT_EQUALS(outputWS->getColumn(12)->name(), "UnitX");
-      TS_ASSERT_EQUALS(outputWS->getColumn(13)->name(), "FoldMultipleFrames");
-      TS_ASSERT_EQUALS(outputWS->getColumn(14)->name(), "OutputWorkspace");
-
-      TS_ASSERT_EQUALS(outputWS->getColumn(15)->name(), "GroupingMethod");
-      TS_ASSERT_EQUALS(outputWS->getColumn(16)->name(), "GroupingString");
-      TS_ASSERT_EQUALS(outputWS->getColumn(17)->name(), "GroupingFile");
-    }
+    TS_ASSERT_EQUALS("1, 2", runtimeProps.getPropertyValue("SpectraRange"));
+    TS_ASSERT_EQUALS("0, 1", runtimeProps.getPropertyValue("BackgroundRange"));
   }
 
   void testValidateRunDetailedBalanceInvalid() {
diff --git a/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferPresenterTest.h b/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferPresenterTest.h
index 3c1eb04db95a..97c8f3459fdf 100644
--- a/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferPresenterTest.h
+++ b/qt/scientific_interfaces/Indirect/test/Reduction/ISISEnergyTransferPresenterTest.h
@@ -16,6 +16,7 @@
 
 #include "MantidFrameworkTestHelpers/IndirectFitDataCreationHelper.h"
 #include "MantidKernel/WarningSuppressions.h"
+#include "MantidQtWidgets/Common/MockAlgorithmRunner.h"
 
 using namespace MantidQt::CustomInterfaces;
 using namespace testing;
@@ -33,6 +34,7 @@ class ISISEnergyTransferPresenterTest : public CxxTest::TestSuite {
 
   void setUp() override {
     auto model = std::make_unique<NiceMock<MockIETModel>>();
+    auto algorithmRunner = std::make_unique<NiceMock<MockAlgorithmRunner>>();
 
     m_outputOptionsView = std::make_unique<NiceMock<MockOutputPlotOptionsView>>();
     m_instrumentConfig = std::make_unique<NiceMock<MockInstrumentConfig>>();
@@ -41,10 +43,12 @@ class ISISEnergyTransferPresenterTest : public CxxTest::TestSuite {
     ON_CALL(*m_view, getPlotOptionsView()).WillByDefault(Return(m_outputOptionsView.get()));
 
     m_model = model.get();
+    m_algorithmRunner = algorithmRunner.get();
     m_idrUI = std::make_unique<NiceMock<MockDataReduction>>();
     ON_CALL(*m_idrUI, getInstrumentConfiguration()).WillByDefault(Return(m_instrumentConfig.get()));
 
-    m_presenter = std::make_unique<IETPresenter>(m_idrUI.get(), m_view.get(), std::move(model));
+    m_presenter =
+        std::make_unique<IETPresenter>(m_idrUI.get(), m_view.get(), std::move(model), std::move(algorithmRunner));
   }
 
   void tearDown() override {
@@ -52,6 +56,7 @@ class ISISEnergyTransferPresenterTest : public CxxTest::TestSuite {
     TS_ASSERT(Mock::VerifyAndClearExpectations(&m_instrumentConfig));
     TS_ASSERT(Mock::VerifyAndClearExpectations(&m_view));
     TS_ASSERT(Mock::VerifyAndClearExpectations(m_model));
+    TS_ASSERT(Mock::VerifyAndClearExpectations(m_algorithmRunner));
     TS_ASSERT(Mock::VerifyAndClearExpectations(&m_idrUI));
 
     m_presenter.reset();
@@ -116,6 +121,7 @@ class ISISEnergyTransferPresenterTest : public CxxTest::TestSuite {
 
   std::unique_ptr<NiceMock<MockIETView>> m_view;
   NiceMock<MockIETModel> *m_model;
+  NiceMock<MockAlgorithmRunner> *m_algorithmRunner;
   std::unique_ptr<NiceMock<MockDataReduction>> m_idrUI;
 
   std::unique_ptr<NiceMock<MockOutputPlotOptionsView>> m_outputOptionsView;
diff --git a/qt/scientific_interfaces/Indirect/test/Reduction/MockObjects.h b/qt/scientific_interfaces/Indirect/test/Reduction/MockObjects.h
index b2564c259234..9e59989058b5 100644
--- a/qt/scientific_interfaces/Indirect/test/Reduction/MockObjects.h
+++ b/qt/scientific_interfaces/Indirect/test/Reduction/MockObjects.h
@@ -44,8 +44,8 @@ class MockIETModel : public IIETModel {
   MOCK_METHOD1(validateRunData, std::vector<std::string>(IETRunData const &runData));
   MOCK_METHOD1(validatePlotData, std::vector<std::string>(IETPlotData const &plotData));
 
-  MOCK_METHOD3(runIETAlgorithm, std::string(MantidQt::API::BatchAlgorithmRunner *batchAlgoRunner,
-                                            InstrumentData const &instData, IETRunData &runParams));
+  MOCK_METHOD2(energyTransferAlgorithm,
+               MantidQt::API::IConfiguredAlgorithm_sptr(InstrumentData const &instData, IETRunData &runParams));
   MOCK_CONST_METHOD2(plotRawAlgorithmQueue,
                      std::deque<MantidQt::API::IConfiguredAlgorithm_sptr>(InstrumentData const &instData,
                                                                           IETPlotData const &plotData));
@@ -60,6 +60,7 @@ class MockIETModel : public IIETModel {
   MOCK_METHOD4(groupWorkspaces, std::vector<std::string>(std::string const &groupName, std::string const &instrument,
                                                          std::string const &groupOption, bool const shouldGroup));
 
+  MOCK_CONST_METHOD0(outputGroupName, std::string());
   MOCK_CONST_METHOD0(outputWorkspaceNames, std::vector<std::string>());
 };
 
diff --git a/qt/widgets/common/CMakeLists.txt b/qt/widgets/common/CMakeLists.txt
index 619c82be64cf..873ee84f1519 100644
--- a/qt/widgets/common/CMakeLists.txt
+++ b/qt/widgets/common/CMakeLists.txt
@@ -5,7 +5,6 @@ set(SRC_FILES
     src/AlgorithmHistoryWindow.cpp
     src/AlgorithmInputHistory.cpp
     src/AlgorithmPropertiesWidget.cpp
-    src/AlgorithmRunner.cpp
     src/AlgorithmSelectorWidget.cpp
     src/AlgorithmRunner.cpp
     src/AlternateCSPythonLexer.cpp
@@ -391,7 +390,6 @@ set(MOC_FILES
     inc/MantidQtWidgets/Common/OptionsPropertyWidget.h
     inc/MantidQtWidgets/Common/PropertyWidget.h
     inc/MantidQtWidgets/Common/PythonRunner.h
-    inc/MantidQtWidgets/Common/QtAlgorithmRunner.h
     inc/MantidQtWidgets/Common/QScienceSpinBox.h
     inc/MantidQtWidgets/Common/QtSignalChannel.h
     inc/MantidQtWidgets/Common/RepoTreeView.h
@@ -523,7 +521,6 @@ set(INC_FILES
     inc/MantidQtWidgets/Common/QtAlgorithmRunner.h
     inc/MantidQtWidgets/Common/QSettingsHelper.h
     inc/MantidQtWidgets/Common/QStringUtils.h
-    inc/MantidQtWidgets/Common/QtAlgorithmRunner.h
     inc/MantidQtWidgets/Common/QtJSONUtils.h
     inc/MantidQtWidgets/Common/ScriptRepositoryView.h
     inc/MantidQtWidgets/Common/SelectionNotificationService.h