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Branch: master
Commits on Jun 8, 2019
  1. Add manubot version details to build readme (#232)

    agitter committed Jun 8, 2019
Commits on May 1, 2019
  1. Add meta review link to readme

    agitter committed May 1, 2019
    Merges #217
    Closes #216
Commits on Mar 12, 2019
  1. Update rootstock manual JSON CSL in example reference

    agitter authored and dhimmel committed Mar 12, 2019
    Merges #186
Commits on Oct 9, 2018
  1. Case sensitive environment variables in setup instructions

    agitter committed Oct 9, 2018
    Merges #138
    Closes #137
    
    * Case sensitive environment variables
    
    * Update phrasing borrowing dhimmel ideas
    
    * Change account to username
Commits on Jun 18, 2018
  1. build/README.md: minor fix to build instructions

    agitter authored and dhimmel committed Jun 18, 2018
    Merges #125
Commits on Jan 19, 2018
  1. Merge pull request #103 from agitter/issues

    agitter committed Jan 19, 2018
    Suggest issues for general inquiries
  2. Suggest issues for general inquiries

    agitter committed Jan 19, 2018
Commits on Jan 16, 2018
  1. Merge pull request #102 from greenelab/citation-tags

    agitter committed Jan 16, 2018
    Update usage instructions for citation tags
  2. Update usage instructions for citation tags

    agitter committed Jan 16, 2018
Commits on Jul 31, 2017
  1. README: link to cloning instructions (#44)

    agitter authored and dhimmel committed Jul 31, 2017
    * Add cloning instructions to readme
    * Remove initialize script
Commits on Jul 29, 2017
  1. Compute word count (#42)

    agitter authored and dhimmel committed Jul 29, 2017
Commits on Jul 18, 2017
  1. Fix typo in 02.equations.md (#30)

    agitter authored and dhimmel committed Jul 18, 2017
    Fix typo: delimeters → delimiters
    
    Closes #25
Commits on Jul 10, 2017
  1. Update shortened URLs (#9)

    agitter authored and dhimmel committed Jul 10, 2017
Commits on Jul 5, 2017
  1. Manual reference example (#5)

    agitter authored and dhimmel committed Jul 5, 2017
    Closes #3
    
    * URL reference for manual reference example
    * Add intructions for manual references
    * Fix relative link
    * Add manual reference example
    * Rephrasing
Commits on Jun 21, 2017
  1. Templates for author list, affiliations, and funding (#550)

    agitter committed Jun 21, 2017
    * Temporarily add exported HTML manuscript to support subsequent diff
    
    * Derive author initials and confirm authors approve manuscript
    
    * Standardize funders in author table
    
    * Further standardize funding information in author table
    
    * Add functions to format funding information for templates
    
    * Add templates for funding information
    
    * Add predetermined author order to prepare for additional templating
    
    * Generate affiliation numbers
    
    * Refactor affiliation code and add annotation to first author
    
    * Add corresponding author annotation
    
    * Better support for  multiple middle initials
    
    * Remove trailing whitespace
    
    * Add template for corresponding author contact information
    
    * Replace defaultdict with setdefault
    
    * Sort author table and remove author ordering column
    
    * Switch to OrderedDict for funding information
    
    * Separate author name, affiliation, and symbol for template
    
    * Improve code style
    
    * Format affiliations in jinja2
    
    * Ignore and remove exported HTML manuscipt
Commits on Jun 18, 2017
  1. Template for author counts (#546)

    agitter committed Jun 18, 2017
    * Test template with hard-coded author count
    
    * Move hard-coded author counts to authors.py
    
    * Dynamically get author count for template
    
    * Rename authors file and switch to OrderedDict
Commits on Jun 17, 2017
  1. Update build notes (#545)

    agitter committed Jun 17, 2017
    * Update build notes
    
    * Add note about Linux requirement
Commits on Jun 12, 2017
  1. Convert author table from md to tsv (#541)

    agitter committed Jun 12, 2017
    * Convert author table from md to tsv
    
    * Convert tsv from Unicode to UTF-8
    
    * Machine readable column headers
Commits on Dec 21, 2016
  1. Merge pull request #147 from evancofer/hardware-limitations-and-scaling

    agitter committed Dec 21, 2016
    Hardware Limitations and Scaling
Commits on Dec 20, 2016
  1. Merge pull request #136 from greenelab/study-stubs

    agitter committed Dec 20, 2016
    Outline the Study section
Commits on Nov 14, 2016
  1. Merge pull request #143 from greenelab/contributing

    agitter committed Nov 14, 2016
    URL citation guidelines
Commits on Nov 13, 2016
  1. URL citation guidelines

    agitter committed Nov 13, 2016
Commits on Oct 30, 2016
  1. Merge pull request #121 from traversc/patch-1

    agitter committed Oct 30, 2016
    Update 02_intro.md
Commits on Oct 27, 2016
  1. Merge pull request #120 from greenelab/status

    agitter committed Oct 27, 2016
    2016-10-26 status report
  2. Rearrange status update order

    agitter committed Oct 27, 2016
Commits on Oct 26, 2016
  1. 2016-10-26 status report

    agitter committed Oct 26, 2016
Commits on Oct 20, 2016
  1. Merge pull request #115 from greenelab/cgreene-patch-1

    agitter committed Oct 20, 2016
    reality has struck!
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