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Changelog

All notable changes to this project will be documented in this file. See standard-version for commit guidelines.

1.1.0 (2020-03-31)

Features

  • Show num levels and modules in file output (0b70cd8)
  • python: Expose codelengths for all trials (eab7ae8)

Bug Fixes

  • Don't use physical names in _states_as_physical.net (5889fb1)

1.0.11 (2020-03-31)

Bug Fixes

  • Handle zero weights in intra-layer links (ddc5a3d)

1.0.10 (2020-03-17)

Bug Fixes

  • Handle unassigned nodes after input tree (d337535), closes #119

1.0.9 (2020-03-14)

Bug Fixes

  • windows: compilation error on std::min (b6c1a41)

1.0.8 (2020-03-12)

Bug Fixes

1.0.7 (2020-03-09)

Bug Fixes

  • Add header in network and states output (c415a4b)
  • Use *Edges/*Arcs instead of *Links in pajek output (ff3a98e)
  • Use node_id instead of id in clu output (39cd4e4)
  • js: Fix support for all file io in Infomap.js (ea9d899)

1.0.6 (2020-03-03)

Bug Fixes

  • python: Enable numpy.int64 in link weights (8d91206), closes #107
  • python: Print tree by default with python cli (1565cab), closes #106

1.0.5 (2020-03-02)

Bug Fixes

  • Common parameters should not be advanced (#101) (2907c86), closes #100
  • consistently use 1-based indexing for paths and 0 for indexes (f283818), closes #103
  • Fix ftree links since remapping path from 1 (f447b48), closes #102

1.0.4 (2020-02-28)

Bug Fixes

  • js: Revert attempted worker blob optimization (c521373)

1.0.3 (2020-02-28)

Bug Fixes

  • js: Handle Infomap exceptions in js (7a641f9), closes #99
  • python: Start module id from 1 in get_[multilevel_]modules (9419798)

1.0.2 (2020-02-28)

Bug Fixes

  • windows: Fix compilation error on std::min (3b000dc), closes #97

1.0.1 (2020-02-27)

Bug Fixes

  • python: Fix missing package_meta on pip install (dd24b1d), closes #95

1.0.0 (2020-02-26)

⚠ BREAKING CHANGES

  • python: Drop support for python 2
  • python: Rename physicalId to node_id. Remove initial partition as first argument to run, use initial_partition argument. Start InfomapIterator.path indexing from one.
  • Output header format has changed
  • Ftree output format has changed to include enter flow
  • Clu output now contains top modules instead of leaf modules
  • Tree output is sorted on flow
  • Clu module ids starts from 1 instead of 0
  • Output contains name of the physical node instead of state id
  • Full multilayer format require the *multilayer heading
  • Remove undirdir and outdirdir, use --flow-model. Rename min-improment to --core-loop-codelength-thresh. Remove random-loop-limit. Rename tune-iteration-threshold to --tune-iteration-relative-threshold. Rename skip-replace-to-one-module to --prefer-modular-solution.
  • Removed --print-state-network, use -o states
  • Renamed --set-unidentified-nodes-to-closest-module to --assing-to-neighbouring-module
  • No support for *path input

Features

  • python: Add meta info to infomap package (a2caaf4), closes #63
  • Add enter flow to ftree output (bd3255e), closes #82
  • Show entropy rate in the beginning (f61692c)
  • python: Improve Python API (#87) (c39cd9f)
  • Add -o/--output option for comma-separated formats (a255a18)
  • Add meta data in output file header (66ccc64)
  • Add option to print parameters in json (3a2509d)
  • Allow multilayer formats without specifying -i. (08e09f1)
  • Allow one-sided multilayer relax limit (a116b83), closes #68
  • Begin module id from 1 instead of 0 in clu output (2bbea5d)
  • Create npm package with Infomap worker, changelog and parameters (44dae36)
  • Output name of physical node instead of state id (dda3277)
  • Remove --skip-complete-dangling-memory-nodes (6909f21)
  • Remove support for *path input (e7be175)
  • Rename --set-unidentified-nodes-to-closest-module (16fdc15)
  • Simplify command line interface (f537132)
  • Sort tree on flow (6e27858), closes #71
  • Write top modules to .clu, not bottom level (1e16a3c)

Bug Fixes

  • js: Add missing this in error handler (7345cdf)
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