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The issue is that you are requesting with transparent=False (default value of transparent) but your source is transparent. MapProxy will modify the image to apply the bgcolor.
MapProxy should pass the GeoTIFF unmodified when you request with transparent=true.
There is a report that MapProxy does processes cascaded GeoTIFF requests from MapServer sources and thus removing the georeference information.
http://lists.osgeo.org/pipermail/mapproxy/2012-August/001173.html
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