Java app for GWAS pathway and network analysis. This is the repository for the app, there is a separate repository for the command-line tool.
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README.md

Magnum is a java app for GWAS pathway and network analysis. This is the GitHub repository for the app, there is a separate repository for the command-line tool.

Website

Reference

  • Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, and Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Submitted (preprint available upon request).

GitHub

Features

  • Network connectivity enrichment analysis
  • Compute network properties: diffusion kernels, shortest path lengths, clustering coefficients
  • Perform network operations: union

Magnum is under active development, more features are currently being added.

License

Project lead

Advisor

Affiliations

  • University of Lausanne, Department of Medical Genetics
  • Swiss Institute of Bioinformatics

Extramural funding

  • SystemsX.ch (SysGenetiX project)

Support

UNIL logo SIB logo

Broad logo MIT logo