##fileformat=VCFv4.2 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT covid.fa.ref myseq1.fa NC_045512.2 241 ATCTAGGTTT.CGTCCGGGTG c t 40 PASS NA GT 0 1 NC_045512.2 913 GCACTTTGTC.CGAACAACTG c t 40 PASS NA GT 0 1