From 5e1c40dbf67f51920a225f3a9d03fd4bfdac5880 Mon Sep 17 00:00:00 2001 From: Brian Ondov Date: Tue, 10 Feb 2015 10:46:01 -0500 Subject: [PATCH] Gingr sub-heading for consistency --- docs/content/gingr.rst | 3 +++ 1 file changed, 3 insertions(+) diff --git a/docs/content/gingr.rst b/docs/content/gingr.rst index 4936178..04a388c 100644 --- a/docs/content/gingr.rst +++ b/docs/content/gingr.rst @@ -2,6 +2,8 @@ Gingr ===== +**Interactive visualization of alignments, trees and variants** + .. image:: gingr/logo_med.png Gingr is an interactive tool for exploring large-scale phylogenies in tandem with their corresponding multi-alignments. Gingr can display informative overviews for hundreds or thousands of genomes, while allowing researchers to move quickly to more detailed views of specific subclades and genomic regions, even down to the nucleotide level of their multi-alignments. Additionally, its dynamic display of variants allows interactive selection of various filters, such as indels, poorly aligned regions and suspected sites of recombination. Gingr works chiefly in tandem with Parsnp, an efficient tool for core-genome multi-alignment and phylogenetic reconstruction. It is also applicable, however, to other analytical tools, accepting standard file formats such as multi-Fasta, XMFA, Newick and VCF. @@ -10,6 +12,7 @@ Gingr is an interactive tool for exploring large-scale phylogenies in tandem wit :width: 462 :height: 290 + **Download (v1.2)** * `gingr-OSX64-v1.2.zip `_