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Update prokka cite
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skoren committed May 15, 2014
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Expand Up @@ -35,7 +35,7 @@ cgal CGAL Rahman, A, Pachter, L CGAL: computing genome assembly likelihoods. Gen
masurca MaSuRCA Zimin, A, Marçais, G, Puiu, D, Roberts, M, Salzberg, SL, Yorke, JA. The MaSuRCA genome assembler. Bioinformatics, btt476, 2013.
ray Ray Boisvert, S, Raymond, F, Godzaridis, É, Laviolette, F, Corbeil, J. Ray Meta: scalable de novo metagenome assembly and profiling. Genome biology, 13(12), R122, 2013.
freebayes FreeBayes Garrison, E, Marth, G. Haplotype-based variant detection from short-read sequencing. arXiv preprint arXiv:1207.3907, 2012.
prokka Prokka Prokka: Prokaryotic Genome Annotation System - http://vicbioinformatics.com/
prokka Prokka Seemann, T. Prokka: rapid prokaryotic genome annotation. Bioinformatics, btu153. 2014.
abyss ABySS Simpson, JT, Wong, K, Jackman, SD, Schein, JE, Jones, SJ, Birol, İ. ABySS: a parallel assembler for short read sequence data. Genome research, 19(6), 1117-1123, 2009.
sga SGA Simpson, JT, Durbin, R. Efficient de novo assembly of large genomes using compressed data structures. Genome Research, 22(3), 549-556, 2012.
mira MIRA Chevreux, B, Wetter, T, Suhai, S. Genome Sequence Assembly Using Trace Signals and Additional Sequence Information. In German Conference on Bioinformatics (pp. 45-56), 1999.
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