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    cutadapt removes adapter sequences from sequencing reads

    Python 192 61

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    Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

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    Open any compressed file in Python

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691 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

February 2018

Created a pull request in mdshw5/pyfaidx that received 5 comments

Pass build_index to Fasta constructor

The Fasta constructor should not ignore the build_index parameter, but pass it to the Fasta constructor.

+2 −1 5 comments

Created an issue in mdshw5/pyfaidx that received 10 comments

Option for failing if index not found

We’re using pyfaidx in WhatsHap, a software for read-based phasing. When running multiple instances of the program in parallel that all access the …

10 comments

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