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Organizations

@SciLifeLab

Popular repositories

  1. cutadapt

    Cutadapt removes adapter sequences from sequencing reads

    Python 250 81

  2. radonwave

    Read radon levels from Airthings Wave

    Python 10 3

  3. xopen

    Open any compressed file in Python

    Python 5 3

  4. dnaio

    Read and write FASTQ and FASTA

    Python 5

  5. PyVCF

    Forked from jamescasbon/PyVCF

    A Variant Call Format reader for Python.

    Python 1

  6. wgs-structvar

    Forked from NBISweden/wgs-structvar

    Whole Genome Sequenceing Structural Variation Pipelines

    Perl 1

670 contributions in the last year

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Contribution activity

March 2019

Created a pull request in bioconda/bioconda-recipes that received 1 comment

Cutadapt 2 and initial recipe for dnaio

I have read the guidelines for bioconda recipes. This PR adds a new recipe. AFAIK, this recipe is directly relevant to the biological sciences

+46 −7 1 comment

Created an issue in pysam-developers/pysam that received 5 comments

VariantFile.write segfaults with incomplete header

Hi, we’re trying to use pysam.VariantFile in WhatsHap instead of PyVCF. Running our tests gave some segmentation faults. I can reproduce the proble…

5 comments

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