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Trouble demultiplexing dual indexed reads #378
Thanks for the great tool, @marcelm! I am trying to test out the recently-added dual-index demultiplexing functionality. I can get DI trimming to work, but not demultiplexing --- no reads are demultiplexed. I am hoping this is just user error on my end --- any assistance would be greatly appreciated!
Possibly related to #347.
Minimum working example
Ok, this was a bit embarrasing because the
Thanks by the way for the really nice test! That has made it very easy to reproduce. I have taken the liberty of integrating it as a unit test into Cutadapt.
I have fixed the problem now.