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overlapping prefix adapters #53
From marcel.m...@tu-dortmund.de on May 08, 2012 17:27:10
The new -g ^ADAPTER option isn’t enough. There has been a request to allow less strict anchoring, where the adapter overlaps the beginning of the read.
This is easily achieved by this change:
The question is whether that is the desired behaviour or whether both versions should be possible.
Original issue: http://code.google.com/p/cutadapt/issues/detail?id=43
From seb.th...@gmail.com on November 07, 2014 08:01:56
Yes this behaviour could very usefull. I have tons of examples were my MID has been "eaten" at the beginning of the read. Combining -e and -O allows substitutions and that's too permissive.
And by the way, thanks for the trick.