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Fluorosequencing Image Analysis code
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agpy
LICENSE.md
MCsimlib.py
README.md
basic_experiment_script.py
basic_image_script.py
basic_timetrace_script.py
flexlibrary.py
gaussfitter.py
install_helper.sh
iterative_background_v2.py
jupyter_development.py
lognormal_fitter_v2.py
montage.py
peptide_simulator.py
pflib.py
phase_correlate.py
plotting.py
remainder_correction.py
simulate_peptide.py
stepfitting_library.py

README.md

FluorosequencingImageAnalysis

Fluorosequencing Image Analysis code

agpy copied from https://github.com/keflavich

phase_correlate.py is code now part of scikit-image.

A Docker image with a pre-installed, working version of this code and an example data set is available on Zenodo at DOI 10.5281/zenodo.572317. A walkthrough tutorial is provided on Zenodo with the image, allowing you to immediately start running analysis.

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