example code for "O’Leary, T., Williams, A. H., Franci, A., & Marder, E. (2014). Cell types, network homeostasis, and pathological compensation from a biologically plausible ion channel expression model. Neuron, 82(4), 809-821."
C++ Matlab
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CaS.h
CaT.h
Ih.h
KCa.h
Ka.h
Kdr.h
NaV.h
README.md
burstParams.m
calciumsensor.h
chem_syn.h
compartment.h
compstate.h
conductance.h
controller.h
deriv.m
ejunc.h
figure3.m
findhump.m
gap.h
int_control_compartment.cpp
int_control_compartment.mexw64
int_controller.h
leak.h
plotcolours.mat
plotmatrix_spaced.m
run_comp.cpp
run_comp.mexw64
run_comp_inj.cpp
sensor.h
sizefig.m
slow_syn.h
spikeTimes.m
synapse.h
tidyfig.m
tidyfonts.m
tight_subplot.m

README.md

oleary_et_al_2014

example code for "O’Leary, T., Williams, A. H., Franci, A., & Marder, E. (2014). Cell types, network homeostasis, and pathological compensation from a biologically plausible ion channel expression model. Neuron, 82(4), 809-821."

This code implements the regulation model and reproduces Figure 3.

Instructions:

  1. configure mex in MATLAB to compile C++
  2. run 'figure3.m'
  3. the code should compile and produce the plots shown in Figure 3 of the paper

comments/concerns can be addressed to toleary@brandeis.edu Note: I cannot provide advice/assistance with configuring your system!

  • enjoy!