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data Add ssGSEA analysis Jul 5, 2019
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README.rst update readme Feb 22, 2019

README.rst

PPTC PDX RNA Clustering & GSEA

Authors: Jacob Pfeil
Apexa Modi
Contact: Jacob Pfiel (jpfeil@ucsc.edu), Apexa Modi (modia@email.chop.edu)
Organization: UCSC, CHOP
Status: In-process
Date: 2019-07-18

Introduction

This repo contains code for:

  1. Tumormap clustering and GSEA
  2. Create publication quality figures.

Details

  • fgsea-analysis-stan-v8-tiger-2018-08-26.ipynb:
  • analyze-post-stan-v8-2019-01-20.ipynb:
  • make-stan-input-v8-2019-01-20.ipynb:
  • multilevel-pdx-model-v8.stan:
  • PPTC_GSEA_FigureCode_Final.Rmd: Creates pathway enrichment heatmap Figure 6C
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