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Tools for estimating and analyzing Markov state models
Python C Other
Branch: devel
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Type Name Latest commit message Commit time
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doc up [ci skip] Nov 12, 2018
msmtools [util/types] fix import warning Nov 12, 2019
tests [generation] replaced scipy.stats.rv_discrete by np.random.choice Oct 30, 2019
tools [conda-recipe] import protect main call to pytest Sep 18, 2019
.travis.yml [ci/travis] use cf Sep 18, 2019 updated dev changelog Aug 31, 2015
README.rst typo Sep 18, 2019
appveyor.yml [ci/appveyor] disable wrapping for msvc Sep 18, 2019
setup.cfg merged devel Jun 25, 2018



What is it?

msmtools is an open source collection of algorithms for the estimation and analysis of discrete state space Markov chains via Markov state models (MSM).

The algorithms are implemented using NumPy and SciPy.


With pip:

pip install msmtools

with conda:

conda install -c conda-forge msmtools

or install latest devel branch with pip:

pip install git+

Support and development

For bug reports/suggestions/complains please file an issue on GitHub.

Or start a discussion on our mailing list:

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