This repo accompanies our article:

Zhang, T., Rosenberg, M., Jing, Z., Perona, P., and Meister, M. (2023). Endotaxis: A neuromorphic algorithm for mapping, goal-learning, navigation, and patrolling. BioRxiv.

Contents:

Endotaxis_230903.pdf: a copy of the article.

Endotaxis-F.ipynb: Jupyter notebook with code to reproduce the analysis in the article.

sims,figs: Output directories for simulations and figures produced by the code.

data: Experimental data needed to run the code.

Plot_Utils.py,Maze_Utils.py: Python modules with useful functions.

To replicate all the calculations:

• Empty the figs/ and sims/ directories

• Run the entire notebook Endotaxis-F.ipynb

• Now figs/ should contain all the figures in the article