This repository served as a coordination hub for a tool training that took place at the http://gcc2015.tsl.ac.uk/training-day/ Until further notice it is no longer maintained.

Introduction to Writing Galaxy Tools & Publishing in Galaxy Tool Shed

Crucial links

• this repository: http://bit.ly/trainhome
• tool training slide deck: http://bit.ly/traindeck

Files in this repository

• head.xml is an example tool for the first part of training
• 2.fastq is example fastq file for testing seqtk
• .shed.yml is for package_seqtk_1_0_r75 used in Tool Shed publishing part

Helpful

• Planemo docs: http://planemo.readthedocs.org/

Your choice of training environment from:

• Standard Virtual Machine Image - follow http://planemo.readthedocs.org/en/master/appliance.html#launching-the-appliance-virtualbox-ova
• Vagrant - follow http://planemo.readthedocs.org/en/master/appliance.html#launching-the-appliance-vagrant
• Docker - follow http://planemo.readthedocs.org/en/master/appliance.html#launching-the-appliance-docker