PAAQD2: A code-refined version of PAAQD

Installation

• Install the latest version from GitHub as follows:

if(!require(devtools)) install.packages("devtools")
devtools::install_github("masato-ogishi/PAAQD2")

•   You might be prompted to install some packages before installling Repitope. Follow the message(s).

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library(PAAQD2)

Usage

PAAQD2(peptideSet=c("YILDLQPEN","MCLRFLSKI","GLSPAITKY","WWFQSSMSK","ATATELNNA","VVVVVVVVV"))

Reference

Saethang, T., Hirose, O., Kimkong, I., Tran, V. A., Dang, X. T., Nguyen, L. A. T., ... & Satou, K. (2013). PAAQD: Predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors. Journal of immunological methods, 387(1), 293-302.