From 9c895033d0013d829738c85c8f21f794aa7e3bf8 Mon Sep 17 00:00:00 2001
From: zyrd <shyuep@gmail.com>
Date: Tue, 24 Sep 2019 13:26:43 -0700
Subject: [PATCH] Update docs

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 ...atgen.electronic_structure.boltztrap2.html |     3 +-
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 docs/pymatgen.electronic_structure.dos.html   |     3 +-
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 docs/pymatgen.entries.exp_entries.html        |     3 +-
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 docs/pymatgen.ext.jhu.html                    |     3 +-
 docs/pymatgen.ext.matproj.html                |     3 +-
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 docs/pymatgen.io.abinit.abiobjects.html       |     3 +-
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 docs/pymatgen.io.abinit.db.html               |     3 +-
 docs/pymatgen.io.abinit.events.html           |     4 +-
 docs/pymatgen.io.abinit.flows.html            |     3 +-
 docs/pymatgen.io.abinit.helpers.html          |     3 +-
 docs/pymatgen.io.abinit.html                  |     3 +-
 docs/pymatgen.io.abinit.launcher.html         |     3 +-
 docs/pymatgen.io.abinit.netcdf.html           |     3 +-
 docs/pymatgen.io.abinit.nodes.html            |    27 +-
 docs/pymatgen.io.abinit.pseudos.html          |     3 +-
 docs/pymatgen.io.abinit.qadapters.html        |     3 +-
 docs/pymatgen.io.abinit.qjobs.html            |    27 +-
 docs/pymatgen.io.abinit.qutils.html           |     3 +-
 ...en.io.abinit.scheduler_error_handlers.html |     3 +-
 ...gen.io.abinit.scheduler_error_parsers.html |     3 +-
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 docs/pymatgen.io.exciting.inputs.html         |     3 +-
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 docs/pymatgen.io.phonopy.html                 |     3 +-
 docs/pymatgen.io.prismatic.html               |     3 +-
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 docs/pymatgen.io.qchem.html                   |     3 +-
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 docs/pymatgen.io.xr.html                      |     3 +-
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 docs/pymatgen.io.zeopp.html                   |     3 +-
 docs/pymatgen.optimization.html               |     3 +-
 ...matgen.optimization.linear_assignment.html |     3 +-
 ....optimization.linear_assignment_numpy.html |     3 +-
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 docs/pymatgen.phonon.dos.html                 |     3 +-
 docs/pymatgen.phonon.html                     |     3 +-
 docs/pymatgen.phonon.plotter.html             |     3 +-
 docs/pymatgen.symmetry.analyzer.html          |     3 +-
 docs/pymatgen.symmetry.bandstructure.html     |   189 +-
 docs/pymatgen.symmetry.groups.html            |    30 +-
 docs/pymatgen.symmetry.html                   |     3 +-
 docs/pymatgen.symmetry.maggroups.html         |     3 +-
 docs/pymatgen.symmetry.settings.html          |     3 +-
 docs/pymatgen.symmetry.site_symmetries.html   |     3 +-
 docs/pymatgen.symmetry.structure.html         |    40 +-
 ...nsformations.advanced_transformations.html |     3 +-
 ...ransformations.defect_transformations.html |     3 +-
 docs/pymatgen.transformations.html            |     3 +-
 ....transformations.site_transformations.html |     3 +-
 ...nsformations.standard_transformations.html |     3 +-
 ...en.transformations.transformation_abc.html |     3 +-
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 496 files changed, 12879 insertions(+), 2135 deletions(-)
 create mode 100644 docs/_static/jquery-3.4.1.js

diff --git a/docs/_modules/index.html b/docs/_modules/index.html
index f44a8dedc64..ab5dd2ae687 100644
--- a/docs/_modules/index.html
+++ b/docs/_modules/index.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../_static/doctools.js"></script>
     <script type="text/javascript" src="../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
  
@@ -299,7 +298,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/logging.html b/docs/_modules/logging.html
index 4d520da7241..c391bfe1565 100644
--- a/docs/_modules/logging.html
+++ b/docs/_modules/logging.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../_static/doctools.js"></script>
     <script type="text/javascript" src="../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
  
@@ -2190,7 +2189,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/monty/dev.html b/docs/_modules/monty/dev.html
index 1b74ead3e95..133d9768eaf 100644
--- a/docs/_modules/monty/dev.html
+++ b/docs/_modules/monty/dev.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
  
@@ -309,7 +308,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pathlib.html b/docs/_modules/pathlib.html
index cbfea19f550..b1d3c58d432 100644
--- a/docs/_modules/pathlib.html
+++ b/docs/_modules/pathlib.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../_static/doctools.js"></script>
     <script type="text/javascript" src="../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
  
@@ -1579,7 +1578,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen.html b/docs/_modules/pymatgen.html
index 88fdb27bc3a..d6a69f5b052 100644
--- a/docs/_modules/pymatgen.html
+++ b/docs/_modules/pymatgen.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
  
@@ -185,7 +184,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/alchemy/filters.html b/docs/_modules/pymatgen/alchemy/filters.html
index c892399f571..0a82b7661f6 100644
--- a/docs/_modules/pymatgen/alchemy/filters.html
+++ b/docs/_modules/pymatgen/alchemy/filters.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -376,7 +375,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/alchemy/materials.html b/docs/_modules/pymatgen/alchemy/materials.html
index 7a97c86818b..ecfa4cb8aab 100644
--- a/docs/_modules/pymatgen/alchemy/materials.html
+++ b/docs/_modules/pymatgen/alchemy/materials.html
@@ -13,7 +13,6 @@
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -466,7 +465,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/alchemy/transmuters.html b/docs/_modules/pymatgen/alchemy/transmuters.html
index a42a76f7d15..bc0575a3e4e 100644
--- a/docs/_modules/pymatgen/alchemy/transmuters.html
+++ b/docs/_modules/pymatgen/alchemy/transmuters.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -491,7 +490,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/adsorption.html b/docs/_modules/pymatgen/analysis/adsorption.html
index 887082e3f8a..fc6d3587193 100644
--- a/docs/_modules/pymatgen/analysis/adsorption.html
+++ b/docs/_modules/pymatgen/analysis/adsorption.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -327,7 +326,6 @@ <h1>Source code for pymatgen.analysis.adsorption</h1><div class="highlight"><pre
                     <span class="k">if</span> <span class="s1">&#39;hollow&#39;</span> <span class="ow">in</span> <span class="n">positions</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">obtuse</span><span class="p">:</span>
                         <span class="n">ads_sites</span><span class="p">[</span><span class="s1">&#39;hollow&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
                             <span class="bp">self</span><span class="o">.</span><span class="n">ensemble_center</span><span class="p">(</span><span class="n">mesh</span><span class="p">,</span> <span class="n">v</span><span class="p">))</span>
-        <span class="n">ads_sites</span><span class="p">[</span><span class="s1">&#39;all&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="n">ads_sites</span><span class="o">.</span><span class="n">values</span><span class="p">(),</span> <span class="p">[])</span>
         <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">sites</span> <span class="ow">in</span> <span class="n">ads_sites</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="c1"># Pare off outer sites for bridge/hollow</span>
             <span class="k">if</span> <span class="n">key</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;bridge&#39;</span><span class="p">,</span> <span class="s1">&#39;hollow&#39;</span><span class="p">]:</span>
@@ -348,6 +346,7 @@ <h1>Source code for pymatgen.analysis.adsorption</h1><div class="highlight"><pre
             <span class="n">sites</span> <span class="o">=</span> <span class="p">[</span><span class="n">site</span> <span class="o">+</span> <span class="n">distance</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mvec</span> <span class="k">for</span> <span class="n">site</span> <span class="ow">in</span> <span class="n">sites</span><span class="p">]</span>
 
             <span class="n">ads_sites</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">sites</span>
+        <span class="n">ads_sites</span><span class="p">[</span><span class="s1">&#39;all&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="n">ads_sites</span><span class="o">.</span><span class="n">values</span><span class="p">(),</span> <span class="p">[])</span>
         <span class="k">return</span> <span class="n">ads_sites</span></div>
 
 <div class="viewcode-block" id="AdsorbateSiteFinder.symm_reduce"><a class="viewcode-back" href="../../../pymatgen.analysis.adsorption.html#pymatgen.analysis.adsorption.AdsorbateSiteFinder.symm_reduce">[docs]</a>    <span class="k">def</span> <span class="nf">symm_reduce</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">coords_set</span><span class="p">,</span> <span class="n">threshold</span><span class="o">=</span><span class="mf">1e-6</span><span class="p">):</span>
@@ -787,7 +786,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/aflow_prototypes.html b/docs/_modules/pymatgen/analysis/aflow_prototypes.html
index 2417c3eb1c2..33b9bebe08a 100644
--- a/docs/_modules/pymatgen/analysis/aflow_prototypes.html
+++ b/docs/_modules/pymatgen/analysis/aflow_prototypes.html
@@ -13,7 +13,6 @@
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diff --git a/docs/_modules/pymatgen/analysis/defects/defect_compatibility.html b/docs/_modules/pymatgen/analysis/defects/defect_compatibility.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/defects/dilute_solution_model.html b/docs/_modules/pymatgen/analysis/defects/dilute_solution_model.html
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@@ -1436,7 +1435,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/defects/generators.html b/docs/_modules/pymatgen/analysis/defects/generators.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/defects/thermodynamics.html b/docs/_modules/pymatgen/analysis/defects/thermodynamics.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/defects/utils.html b/docs/_modules/pymatgen/analysis/defects/utils.html
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@@ -1474,7 +1473,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/diffraction/core.html b/docs/_modules/pymatgen/analysis/diffraction/core.html
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@@ -296,7 +295,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -285,7 +284,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -381,7 +380,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -987,7 +986,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/dimensionality.html b/docs/_modules/pymatgen/analysis/dimensionality.html
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@@ -637,7 +636,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/elasticity/elastic.html b/docs/_modules/pymatgen/analysis/elasticity/elastic.html
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@@ -1162,7 +1161,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/elasticity/strain.html b/docs/_modules/pymatgen/analysis/elasticity/strain.html
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@@ -347,7 +346,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/elasticity/stress.html b/docs/_modules/pymatgen/analysis/elasticity/stress.html
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@@ -192,7 +191,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/energy_models.html b/docs/_modules/pymatgen/analysis/energy_models.html
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@@ -245,7 +244,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/eos.html b/docs/_modules/pymatgen/analysis/eos.html
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@@ -670,7 +669,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/ewald.html b/docs/_modules/pymatgen/analysis/ewald.html
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@@ -743,7 +742,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/analysis/excitation.html b/docs/_modules/pymatgen/analysis/excitation.html
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@@ -121,7 +120,7 @@ <h3>Navigation</h3>
 
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diff --git a/docs/_modules/pymatgen/analysis/ferroelectricity/polarization.html b/docs/_modules/pymatgen/analysis/ferroelectricity/polarization.html
index f7d128cd966..fb766e04c73 100644
--- a/docs/_modules/pymatgen/analysis/ferroelectricity/polarization.html
+++ b/docs/_modules/pymatgen/analysis/ferroelectricity/polarization.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -49,24 +48,7 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
-
-<span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span>
-<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">This module provides the classes needed to analyze the change in polarization</span>
-<span class="sd">from a nonpolar reference phase to a polar ferroelectric phase.</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
-<span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Tess Smidt&quot;</span>
-<span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2017, The Materials Project&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.0&quot;</span>
-<span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;tsmidt@berkeley.edu&quot;</span>
-<span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Development&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;April 15, 2017&quot;</span>
-
-<span class="sd">&quot;&quot;&quot;</span>
+<span class="sa">r</span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">This module contains classes useful for analyzing ferroelectric candidates.</span>
 <span class="sd">The Polarization class can recover the spontaneous polarization using</span>
 <span class="sd">multiple calculations along a nonpolar to polar ferroelectric distortion.</span>
@@ -112,6 +94,18 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
 <span class="sd">&quot;&quot;&quot;</span>
 
 
+<span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span>
+<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
+<span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Tess Smidt&quot;</span>
+<span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2017, The Materials Project&quot;</span>
+<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.0&quot;</span>
+<span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;tsmidt@berkeley.edu&quot;</span>
+<span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Development&quot;</span>
+<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;April 15, 2017&quot;</span>
+
+
 <div class="viewcode-block" id="zval_dict_from_potcar"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.zval_dict_from_potcar">[docs]</a><span class="k">def</span> <span class="nf">zval_dict_from_potcar</span><span class="p">(</span><span class="n">potcar</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Creates zval_dictionary for calculating the ionic polarization from</span>
@@ -135,7 +129,7 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
 
 <span class="sd">    Returns polarization in electron Angstroms.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">norms</span> <span class="o">=</span> <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+    <span class="n">norms</span> <span class="o">=</span> <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
     <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">multiply</span><span class="p">(</span><span class="n">norms</span><span class="p">,</span> <span class="o">-</span><span class="n">site</span><span class="o">.</span><span class="n">frac_coords</span> <span class="o">*</span> <span class="n">zval</span><span class="p">)</span></div>
 
 
@@ -157,6 +151,10 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
 
 
 <div class="viewcode-block" id="PolarizationLattice"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.PolarizationLattice">[docs]</a><span class="k">class</span> <span class="nc">PolarizationLattice</span><span class="p">(</span><span class="n">Structure</span><span class="p">):</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Why is a Lattice inheriting a structure? This is ridiculous.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
 <div class="viewcode-block" id="PolarizationLattice.get_nearest_site"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.PolarizationLattice.get_nearest_site">[docs]</a>    <span class="k">def</span> <span class="nf">get_nearest_site</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">coords</span><span class="p">,</span> <span class="n">site</span><span class="p">,</span> <span class="n">r</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Given coords and a site, find closet site to coords.</span>
@@ -272,7 +270,7 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
             <span class="k">return</span> <span class="n">p_elecs</span><span class="p">,</span> <span class="n">p_ions</span></div>
 
 <div class="viewcode-block" id="Polarization.get_same_branch_polarization_data"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.Polarization.get_same_branch_polarization_data">[docs]</a>    <span class="k">def</span> <span class="nf">get_same_branch_polarization_data</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">convert_to_muC_per_cm2</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">all_in_polar</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;</span>
+        <span class="sa">r</span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Get same branch dipole moment (convert_to_muC_per_cm2=False)</span>
 <span class="sd">        or polarization for given polarization data (convert_to_muC_per_cm2=True).</span>
 
@@ -331,9 +329,9 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
             <span class="c1"># adjust lattices</span>
             <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">L</span><span class="p">):</span>
                 <span class="n">lattice</span> <span class="o">=</span> <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-                <span class="n">l</span><span class="p">,</span> <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="n">i</span><span class="p">],</span> <span class="n">a</span><span class="p">)</span>
+                <span class="n">l</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+                <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
+                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="n">i</span><span class="p">]),</span> <span class="o">*</span><span class="n">a</span><span class="p">)</span>
         <span class="c1">#  convert polarizations to polar lattice</span>
         <span class="k">elif</span> <span class="n">convert_to_muC_per_cm2</span> <span class="ow">and</span> <span class="n">all_in_polar</span><span class="p">:</span>
             <span class="n">abc</span> <span class="o">=</span> <span class="p">[</span><span class="n">lattice</span><span class="o">.</span><span class="n">abc</span> <span class="k">for</span> <span class="n">lattice</span> <span class="ow">in</span> <span class="n">lattices</span><span class="p">]</span>
@@ -342,9 +340,10 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
             <span class="n">p_tot</span> <span class="o">*=</span> <span class="n">abc</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="n">volumes</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_to_muC</span> <span class="o">*</span> <span class="n">cm2_to_A2</span>  <span class="c1"># to muC / cm^2</span>
             <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">L</span><span class="p">):</span>
                 <span class="n">lattice</span> <span class="o">=</span> <span class="n">lattices</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># Use polar lattice</span>
-                <span class="n">l</span><span class="p">,</span> <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">a</span><span class="p">)</span>  <span class="c1"># Use polar units (volume)</span>
+                <span class="n">l</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+                <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
+                <span class="c1"># Use polar units (volume)</span>
+                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="o">*</span><span class="n">a</span><span class="p">)</span>
 
         <span class="n">d_structs</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">sites</span> <span class="o">=</span> <span class="p">[]</span>
@@ -393,18 +392,17 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
             <span class="c1"># adjust lattices</span>
             <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">L</span><span class="p">):</span>
                 <span class="n">lattice</span> <span class="o">=</span> <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-                <span class="n">l</span><span class="p">,</span> <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="n">i</span><span class="p">],</span> <span class="n">a</span><span class="p">)</span>
+                <span class="n">l</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+                <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
+                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="n">i</span><span class="p">]),</span> <span class="o">*</span><span class="n">a</span><span class="p">)</span>
         <span class="k">elif</span> <span class="n">convert_to_muC_per_cm2</span> <span class="ow">and</span> <span class="n">all_in_polar</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">L</span><span class="p">):</span>
                 <span class="n">lattice</span> <span class="o">=</span> <span class="n">lattices</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">l</span><span class="p">,</span> <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">a</span><span class="p">)</span>
+                <span class="n">l</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+                <span class="n">a</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
+                <span class="n">lattices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="o">*</span> <span class="n">units</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="o">*</span><span class="n">a</span><span class="p">)</span>
 
-        <span class="n">quanta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-            <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">l</span> <span class="ow">in</span> <span class="n">lattices</span><span class="p">])</span>
+        <span class="n">quanta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">lengths</span><span class="p">)</span> <span class="k">for</span> <span class="n">l</span> <span class="ow">in</span> <span class="n">lattices</span><span class="p">])</span>
 
         <span class="k">return</span> <span class="n">quanta</span></div>
 
@@ -489,7 +487,13 @@ <h1>Source code for pymatgen.analysis.ferroelectricity.polarization</h1><div cla
 
 
 <div class="viewcode-block" id="EnergyTrend"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.EnergyTrend">[docs]</a><span class="k">class</span> <span class="nc">EnergyTrend</span><span class="p">:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Class for fitting trends to energies.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">energies</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :param energies: Energies</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">energies</span> <span class="o">=</span> <span class="n">energies</span>
 
 <div class="viewcode-block" id="EnergyTrend.spline"><a class="viewcode-back" href="../../../../pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.EnergyTrend.spline">[docs]</a>    <span class="k">def</span> <span class="nf">spline</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -574,7 +578,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/fragmenter.html b/docs/_modules/pymatgen/analysis/fragmenter.html
index 759344f9955..4080bead64c 100644
--- a/docs/_modules/pymatgen/analysis/fragmenter.html
+++ b/docs/_modules/pymatgen/analysis/fragmenter.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -424,7 +423,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/functional_groups.html b/docs/_modules/pymatgen/analysis/functional_groups.html
index f0eaa7aa343..f80e6bb233d 100644
--- a/docs/_modules/pymatgen/analysis/functional_groups.html
+++ b/docs/_modules/pymatgen/analysis/functional_groups.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -455,7 +454,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/gb/grain.html b/docs/_modules/pymatgen/analysis/gb/grain.html
index 9cf445dab09..3bdccc9b7ac 100644
--- a/docs/_modules/pymatgen/analysis/gb/grain.html
+++ b/docs/_modules/pymatgen/analysis/gb/grain.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -2416,7 +2415,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/graphs.html b/docs/_modules/pymatgen/analysis/graphs.html
index a36e7c12ebb..c044dbe665d 100644
--- a/docs/_modules/pymatgen/analysis/graphs.html
+++ b/docs/_modules/pymatgen/analysis/graphs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -421,7 +420,7 @@ <h1>Source code for pymatgen.analysis.graphs</h1><div class="highlight"><pre>
                                                                 <span class="n">include_index</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
             <span class="k">for</span> <span class="n">site</span><span class="p">,</span> <span class="n">dist</span><span class="p">,</span> <span class="n">to_index</span> <span class="ow">in</span> <span class="n">equiv_sites</span><span class="p">:</span>
                 <span class="n">to_jimage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">subtract</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">structure</span><span class="p">[</span><span class="n">from_index</span><span class="p">]</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">)</span>
-                <span class="n">to_jimage</span> <span class="o">=</span> <span class="n">to_jimage</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">int</span><span class="p">)</span>
+                <span class="n">to_jimage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">to_jimage</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">int</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="n">from_index</span><span class="o">=</span><span class="n">from_index</span><span class="p">,</span> <span class="n">from_jimage</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span>
                               <span class="n">to_jimage</span><span class="o">=</span><span class="n">to_jimage</span><span class="p">,</span> <span class="n">to_index</span><span class="o">=</span><span class="n">to_index</span><span class="p">)</span>
             <span class="k">return</span>
@@ -2943,7 +2942,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/interface.html b/docs/_modules/pymatgen/analysis/interface.html
index 73085e34666..4b14ec88f78 100644
--- a/docs/_modules/pymatgen/analysis/interface.html
+++ b/docs/_modules/pymatgen/analysis/interface.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1169,7 +1168,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/interface_reactions.html b/docs/_modules/pymatgen/analysis/interface_reactions.html
index e3b691c98e4..0a927c7d09c 100644
--- a/docs/_modules/pymatgen/analysis/interface_reactions.html
+++ b/docs/_modules/pymatgen/analysis/interface_reactions.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -636,7 +635,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/local_env.html b/docs/_modules/pymatgen/analysis/local_env.html
index e7c3b80ce90..f05f4b2cb49 100644
--- a/docs/_modules/pymatgen/analysis/local_env.html
+++ b/docs/_modules/pymatgen/analysis/local_env.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -3821,7 +3820,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/magnetism/analyzer.html b/docs/_modules/pymatgen/analysis/magnetism/analyzer.html
index a2ea752a18f..f773701e15c 100644
--- a/docs/_modules/pymatgen/analysis/magnetism/analyzer.html
+++ b/docs/_modules/pymatgen/analysis/magnetism/analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -1374,7 +1373,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/magnetism/heisenberg.html b/docs/_modules/pymatgen/analysis/magnetism/heisenberg.html
index fb6bccc6c77..9b66b0d3a0f 100644
--- a/docs/_modules/pymatgen/analysis/magnetism/heisenberg.html
+++ b/docs/_modules/pymatgen/analysis/magnetism/heisenberg.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -902,7 +901,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/magnetism/jahnteller.html b/docs/_modules/pymatgen/analysis/magnetism/jahnteller.html
index 2b007925383..b2ee0a1d148 100644
--- a/docs/_modules/pymatgen/analysis/magnetism/jahnteller.html
+++ b/docs/_modules/pymatgen/analysis/magnetism/jahnteller.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -623,7 +622,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/molecule_matcher.html b/docs/_modules/pymatgen/analysis/molecule_matcher.html
index 17e0e7d2bfb..180f3672bf7 100644
--- a/docs/_modules/pymatgen/analysis/molecule_matcher.html
+++ b/docs/_modules/pymatgen/analysis/molecule_matcher.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -774,7 +773,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/molecule_structure_comparator.html b/docs/_modules/pymatgen/analysis/molecule_structure_comparator.html
index d95e461a045..057e1fffabb 100644
--- a/docs/_modules/pymatgen/analysis/molecule_structure_comparator.html
+++ b/docs/_modules/pymatgen/analysis/molecule_structure_comparator.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -266,7 +265,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/nmr.html b/docs/_modules/pymatgen/analysis/nmr.html
index 28a0768e3b9..9cf7553d4db 100644
--- a/docs/_modules/pymatgen/analysis/nmr.html
+++ b/docs/_modules/pymatgen/analysis/nmr.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -308,7 +307,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/path_finder.html b/docs/_modules/pymatgen/analysis/path_finder.html
index 7d38c4a3f5e..d4641b0fcf4 100644
--- a/docs/_modules/pymatgen/analysis/path_finder.html
+++ b/docs/_modules/pymatgen/analysis/path_finder.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -529,7 +528,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/phase_diagram.html b/docs/_modules/pymatgen/analysis/phase_diagram.html
index a972bcb4961..69ee88b95b8 100644
--- a/docs/_modules/pymatgen/analysis/phase_diagram.html
+++ b/docs/_modules/pymatgen/analysis/phase_diagram.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -2182,7 +2181,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/piezo.html b/docs/_modules/pymatgen/analysis/piezo.html
index 4e0b1f016bd..3b3ade4eb44 100644
--- a/docs/_modules/pymatgen/analysis/piezo.html
+++ b/docs/_modules/pymatgen/analysis/piezo.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -140,7 +139,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/piezo_sensitivity.html b/docs/_modules/pymatgen/analysis/piezo_sensitivity.html
index 2e48dfc1858..99befb2ed8c 100644
--- a/docs/_modules/pymatgen/analysis/piezo_sensitivity.html
+++ b/docs/_modules/pymatgen/analysis/piezo_sensitivity.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -917,7 +916,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/pourbaix_diagram.html b/docs/_modules/pymatgen/analysis/pourbaix_diagram.html
index 59a6ec44395..79d077b7b06 100644
--- a/docs/_modules/pymatgen/analysis/pourbaix_diagram.html
+++ b/docs/_modules/pymatgen/analysis/pourbaix_diagram.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1163,7 +1162,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/quasiharmonic.html b/docs/_modules/pymatgen/analysis/quasiharmonic.html
index 8b86830eff6..652b701e27e 100644
--- a/docs/_modules/pymatgen/analysis/quasiharmonic.html
+++ b/docs/_modules/pymatgen/analysis/quasiharmonic.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -410,7 +409,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/reaction_calculator.html b/docs/_modules/pymatgen/analysis/reaction_calculator.html
index a2e90a6e1d1..53b677f6028 100644
--- a/docs/_modules/pymatgen/analysis/reaction_calculator.html
+++ b/docs/_modules/pymatgen/analysis/reaction_calculator.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -559,7 +558,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/structure_analyzer.html b/docs/_modules/pymatgen/analysis/structure_analyzer.html
index cbe92c75c20..fe3f1d68cb5 100644
--- a/docs/_modules/pymatgen/analysis/structure_analyzer.html
+++ b/docs/_modules/pymatgen/analysis/structure_analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -739,7 +738,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/structure_matcher.html b/docs/_modules/pymatgen/analysis/structure_matcher.html
index 4d1bb3400d7..86042ea2c47 100644
--- a/docs/_modules/pymatgen/analysis/structure_matcher.html
+++ b/docs/_modules/pymatgen/analysis/structure_matcher.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -128,6 +127,10 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
 
 <div class="viewcode-block" id="AbstractComparator.from_dict"><a class="viewcode-back" href="../../../pymatgen.analysis.structure_matcher.html#pymatgen.analysis.structure_matcher.AbstractComparator.from_dict">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_dict</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :param d: Dict representation</span>
+<span class="sd">        :return: Comparator.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">for</span> <span class="n">trans_modules</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;structure_matcher&#39;</span><span class="p">]:</span>
             <span class="n">mod</span> <span class="o">=</span> <span class="nb">__import__</span><span class="p">(</span><span class="s1">&#39;pymatgen.analysis.&#39;</span> <span class="o">+</span> <span class="n">trans_modules</span><span class="p">,</span>
                              <span class="nb">globals</span><span class="p">(),</span> <span class="nb">locals</span><span class="p">(),</span> <span class="p">[</span><span class="n">d</span><span class="p">[</span><span class="s1">&#39;@class&#39;</span><span class="p">]],</span> <span class="mi">0</span><span class="p">)</span>
@@ -137,6 +140,9 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid Comparator dict&quot;</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="AbstractComparator.as_dict"><a class="viewcode-back" href="../../../pymatgen.analysis.structure_matcher.html#pymatgen.analysis.structure_matcher.AbstractComparator.as_dict">[docs]</a>    <span class="k">def</span> <span class="nf">as_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: MSONable dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;version&quot;</span><span class="p">:</span> <span class="n">__version__</span><span class="p">,</span> <span class="s2">&quot;@module&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__module__</span><span class="p">,</span>
                 <span class="s2">&quot;@class&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">}</span></div></div>
 
@@ -325,7 +331,10 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
             <span class="k">return</span> <span class="kc">False</span></div>
 
 <div class="viewcode-block" id="OccupancyComparator.get_hash"><a class="viewcode-back" href="../../../pymatgen.analysis.structure_matcher.html#pymatgen.analysis.structure_matcher.OccupancyComparator.get_hash">[docs]</a>    <span class="k">def</span> <span class="nf">get_hash</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">composition</span><span class="p">):</span>
-        <span class="c1"># Difficult to define sensible hash</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :param composition: Composition.</span>
+<span class="sd">        :return: 1. Difficult to define sensible hash</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="mi">1</span></div></div>
 
 
@@ -372,52 +381,53 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
 <span class="sd">                    continue. (This function will search all possible</span>
 <span class="sd">                    lattices for the smallest average rms displacement</span>
 <span class="sd">                    between the two structures)</span>
-
-<span class="sd">    Args:</span>
-<span class="sd">        ltol (float): Fractional length tolerance. Default is 0.2.</span>
-<span class="sd">        stol (float): Site tolerance. Defined as the fraction of the</span>
-<span class="sd">            average free length per atom := ( V / Nsites ) ** (1/3)</span>
-<span class="sd">            Default is 0.3.</span>
-<span class="sd">        angle_tol (float): Angle tolerance in degrees. Default is 5 degrees.</span>
-<span class="sd">        primitive_cell (bool): If true: input structures will be reduced to</span>
-<span class="sd">            primitive cells prior to matching. Default to True.</span>
-<span class="sd">        scale (bool): Input structures are scaled to equivalent volume if</span>
-<span class="sd">           true; For exact matching, set to False.</span>
-<span class="sd">        attempt_supercell (bool): If set to True and number of sites in</span>
-<span class="sd">            cells differ after a primitive cell reduction (divisible by an</span>
-<span class="sd">            integer) attempts to generate a supercell transformation of the</span>
-<span class="sd">            smaller cell which is equivalent to the larger structure.</span>
-<span class="sd">        allow_subset (bool): Allow one structure to match to the subset of</span>
-<span class="sd">            another structure. Eg. Matching of an ordered structure onto a</span>
-<span class="sd">            disordered one, or matching a delithiated to a lithiated</span>
-<span class="sd">            structure. This option cannot be combined with</span>
-<span class="sd">            attempt_supercell, or with structure grouping.</span>
-<span class="sd">        comparator (Comparator): A comparator object implementing an equals</span>
-<span class="sd">            method that declares declaring equivalency of sites. Default is</span>
-<span class="sd">            SpeciesComparator, which implies rigid species</span>
-<span class="sd">            mapping, i.e., Fe2+ only matches Fe2+ and not Fe3+.</span>
-
-<span class="sd">            Other comparators are provided, e.g., ElementComparator which</span>
-<span class="sd">            matches only the elements and not the species.</span>
-
-<span class="sd">            The reason why a comparator object is used instead of</span>
-<span class="sd">            supplying a comparison function is that it is not possible to</span>
-<span class="sd">            pickle a function, which makes it otherwise difficult to use</span>
-<span class="sd">            StructureMatcher with Python&#39;s multiprocessing.</span>
-<span class="sd">        supercell_size (str): Method to use for determining the size of a</span>
-<span class="sd">            supercell (if applicable). Possible values are num_sites,</span>
-<span class="sd">            num_atoms, volume, or an element present in both structures.</span>
-<span class="sd">        ignored_species (list): A list of ions to be ignored in matching. Useful</span>
-<span class="sd">            for matching structures that have similar frameworks except for</span>
-<span class="sd">            certain ions, e.g., Li-ion intercalation frameworks. This is more</span>
-<span class="sd">            useful than allow_subset because it allows better control over</span>
-<span class="sd">            what species are ignored in the matching.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ltol</span><span class="o">=</span><span class="mf">0.2</span><span class="p">,</span> <span class="n">stol</span><span class="o">=</span><span class="mf">0.3</span><span class="p">,</span> <span class="n">angle_tol</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">primitive_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
                  <span class="n">scale</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">attempt_supercell</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">allow_subset</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                  <span class="n">comparator</span><span class="o">=</span><span class="n">SpeciesComparator</span><span class="p">(),</span> <span class="n">supercell_size</span><span class="o">=</span><span class="s1">&#39;num_sites&#39;</span><span class="p">,</span>
                  <span class="n">ignored_species</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            ltol (float): Fractional length tolerance. Default is 0.2.</span>
+<span class="sd">            stol (float): Site tolerance. Defined as the fraction of the</span>
+<span class="sd">                average free length per atom := ( V / Nsites ) ** (1/3)</span>
+<span class="sd">                Default is 0.3.</span>
+<span class="sd">            angle_tol (float): Angle tolerance in degrees. Default is 5 degrees.</span>
+<span class="sd">            primitive_cell (bool): If true: input structures will be reduced to</span>
+<span class="sd">                primitive cells prior to matching. Default to True.</span>
+<span class="sd">            scale (bool): Input structures are scaled to equivalent volume if</span>
+<span class="sd">               true; For exact matching, set to False.</span>
+<span class="sd">            attempt_supercell (bool): If set to True and number of sites in</span>
+<span class="sd">                cells differ after a primitive cell reduction (divisible by an</span>
+<span class="sd">                integer) attempts to generate a supercell transformation of the</span>
+<span class="sd">                smaller cell which is equivalent to the larger structure.</span>
+<span class="sd">            allow_subset (bool): Allow one structure to match to the subset of</span>
+<span class="sd">                another structure. Eg. Matching of an ordered structure onto a</span>
+<span class="sd">                disordered one, or matching a delithiated to a lithiated</span>
+<span class="sd">                structure. This option cannot be combined with</span>
+<span class="sd">                attempt_supercell, or with structure grouping.</span>
+<span class="sd">            comparator (Comparator): A comparator object implementing an equals</span>
+<span class="sd">                method that declares declaring equivalency of sites. Default is</span>
+<span class="sd">                SpeciesComparator, which implies rigid species</span>
+<span class="sd">                mapping, i.e., Fe2+ only matches Fe2+ and not Fe3+.</span>
+
+<span class="sd">                Other comparators are provided, e.g., ElementComparator which</span>
+<span class="sd">                matches only the elements and not the species.</span>
+
+<span class="sd">                The reason why a comparator object is used instead of</span>
+<span class="sd">                supplying a comparison function is that it is not possible to</span>
+<span class="sd">                pickle a function, which makes it otherwise difficult to use</span>
+<span class="sd">                StructureMatcher with Python&#39;s multiprocessing.</span>
+<span class="sd">            supercell_size (str): Method to use for determining the size of a</span>
+<span class="sd">                supercell (if applicable). Possible values are num_sites,</span>
+<span class="sd">                num_atoms, volume, or an element present in both structures.</span>
+<span class="sd">            ignored_species (list): A list of ions to be ignored in matching. Useful</span>
+<span class="sd">                for matching structures that have similar frameworks except for</span>
+<span class="sd">                certain ions, e.g., Li-ion intercalation frameworks. This is more</span>
+<span class="sd">                useful than allow_subset because it allows better control over</span>
+<span class="sd">                what species are ignored in the matching.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">ltol</span> <span class="o">=</span> <span class="n">ltol</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">stol</span> <span class="o">=</span> <span class="n">stol</span>
@@ -483,9 +493,9 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
 <span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="k">def</span> <span class="nf">av_lat</span><span class="p">(</span><span class="n">l1</span><span class="p">,</span> <span class="n">l2</span><span class="p">):</span>
-            <span class="n">params</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l1</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">)</span> <span class="o">+</span>
-                      <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l2</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">))</span> <span class="o">/</span> <span class="mi">2</span>
-            <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span><span class="o">*</span><span class="n">params</span><span class="p">)</span>
+            <span class="n">params</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l1</span><span class="o">.</span><span class="n">parameters</span><span class="p">)</span> <span class="o">+</span>
+                      <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">l2</span><span class="o">.</span><span class="n">parameters</span><span class="p">))</span> <span class="o">/</span> <span class="mi">2</span>
+            <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="n">params</span><span class="p">)</span>
 
         <span class="k">def</span> <span class="nf">sc_generator</span><span class="p">(</span><span class="n">s1</span><span class="p">,</span> <span class="n">s2</span><span class="p">):</span>
             <span class="n">s2_fc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">s2</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">)</span>
@@ -827,6 +837,9 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
         <span class="k">return</span> <span class="n">all_groups</span></div>
 
 <div class="viewcode-block" id="StructureMatcher.as_dict"><a class="viewcode-back" href="../../../pymatgen.analysis.structure_matcher.html#pymatgen.analysis.structure_matcher.StructureMatcher.as_dict">[docs]</a>    <span class="k">def</span> <span class="nf">as_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: MSONable dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="p">{</span><span class="s2">&quot;version&quot;</span><span class="p">:</span> <span class="n">__version__</span><span class="p">,</span> <span class="s2">&quot;@module&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__module__</span><span class="p">,</span>
                 <span class="s2">&quot;@class&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span>
                 <span class="s2">&quot;comparator&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">_comparator</span><span class="o">.</span><span class="n">as_dict</span><span class="p">(),</span>
@@ -838,6 +851,10 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
 
 <div class="viewcode-block" id="StructureMatcher.from_dict"><a class="viewcode-back" href="../../../pymatgen.analysis.structure_matcher.html#pymatgen.analysis.structure_matcher.StructureMatcher.from_dict">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_dict</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :param d: Dict representation</span>
+<span class="sd">        :return: StructureMatcher</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="n">StructureMatcher</span><span class="p">(</span>
             <span class="n">ltol</span><span class="o">=</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;ltol&quot;</span><span class="p">],</span> <span class="n">stol</span><span class="o">=</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;stol&quot;</span><span class="p">],</span> <span class="n">angle_tol</span><span class="o">=</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;angle_tol&quot;</span><span class="p">],</span>
             <span class="n">primitive_cell</span><span class="o">=</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;primitive_cell&quot;</span><span class="p">],</span> <span class="n">scale</span><span class="o">=</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;scale&quot;</span><span class="p">],</span>
@@ -1164,23 +1181,24 @@ <h1>Source code for pymatgen.analysis.structure_matcher</h1><div class="highligh
 
 <span class="sd">    NOTE: for defect complexes (more than a single defect),</span>
 <span class="sd">    this comparator will break.</span>
-
-<span class="sd">    Args:</span>
-<span class="sd">        check_charge (bool): Gives option to check</span>
-<span class="sd">            if charges are identical.</span>
-<span class="sd">            Default is False (different charged defects can be same)</span>
-<span class="sd">        check_primitive_cell (bool): Gives option to</span>
-<span class="sd">            compare different supercells of bulk_structure,</span>
-<span class="sd">            rather than directly compare supercell sizes</span>
-<span class="sd">            Default is False (requires bulk_structure in each defect to be same size)</span>
-<span class="sd">        check_lattice_scale (bool): Gives option to scale volumes of</span>
-<span class="sd">            structures to each other identical lattice constants.</span>
-<span class="sd">            Default is False (enforces same</span>
-<span class="sd">            lattice constants in both structures)</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">check_charge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">check_primitive_cell</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                  <span class="n">check_lattice_scale</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            check_charge (bool): Gives option to check</span>
+<span class="sd">                if charges are identical.</span>
+<span class="sd">                Default is False (different charged defects can be same)</span>
+<span class="sd">            check_primitive_cell (bool): Gives option to</span>
+<span class="sd">                compare different supercells of bulk_structure,</span>
+<span class="sd">                rather than directly compare supercell sizes</span>
+<span class="sd">                Default is False (requires bulk_structure in each defect to be same size)</span>
+<span class="sd">            check_lattice_scale (bool): Gives option to scale volumes of</span>
+<span class="sd">                structures to each other identical lattice constants.</span>
+<span class="sd">                Default is False (enforces same</span>
+<span class="sd">                lattice constants in both structures)</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">check_charge</span> <span class="o">=</span> <span class="n">check_charge</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">check_primitive_cell</span> <span class="o">=</span> <span class="n">check_primitive_cell</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">check_lattice_scale</span> <span class="o">=</span> <span class="n">check_lattice_scale</span>
@@ -1275,7 +1293,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/_modules/pymatgen/analysis/structure_prediction/dopant_predictor.html b/docs/_modules/pymatgen/analysis/structure_prediction/dopant_predictor.html
index 522da6ea713..110c9b4312a 100644
--- a/docs/_modules/pymatgen/analysis/structure_prediction/dopant_predictor.html
+++ b/docs/_modules/pymatgen/analysis/structure_prediction/dopant_predictor.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -269,7 +268,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/_modules/pymatgen/analysis/structure_prediction/substitution_probability.html b/docs/_modules/pymatgen/analysis/structure_prediction/substitution_probability.html
index 12071b9d85d..b4e769df3a9 100644
--- a/docs/_modules/pymatgen/analysis/structure_prediction/substitution_probability.html
+++ b/docs/_modules/pymatgen/analysis/structure_prediction/substitution_probability.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -340,7 +339,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/structure_prediction/substitutor.html b/docs/_modules/pymatgen/analysis/structure_prediction/substitutor.html
index 31acc554365..56c091d991f 100644
--- a/docs/_modules/pymatgen/analysis/structure_prediction/substitutor.html
+++ b/docs/_modules/pymatgen/analysis/structure_prediction/substitutor.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -349,7 +348,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/structure_prediction/volume_predictor.html b/docs/_modules/pymatgen/analysis/structure_prediction/volume_predictor.html
index 8af667abefd..03cce46fd0b 100644
--- a/docs/_modules/pymatgen/analysis/structure_prediction/volume_predictor.html
+++ b/docs/_modules/pymatgen/analysis/structure_prediction/volume_predictor.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -343,7 +342,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/substrate_analyzer.html b/docs/_modules/pymatgen/analysis/substrate_analyzer.html
index 33a1cc73709..c8d667b888e 100644
--- a/docs/_modules/pymatgen/analysis/substrate_analyzer.html
+++ b/docs/_modules/pymatgen/analysis/substrate_analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -515,7 +514,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/surface_analysis.html b/docs/_modules/pymatgen/analysis/surface_analysis.html
index 65c4bcffe27..b8905dd2727 100644
--- a/docs/_modules/pymatgen/analysis/surface_analysis.html
+++ b/docs/_modules/pymatgen/analysis/surface_analysis.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1952,7 +1951,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/thermochemistry.html b/docs/_modules/pymatgen/analysis/thermochemistry.html
index f66961104a1..f346f10a725 100644
--- a/docs/_modules/pymatgen/analysis/thermochemistry.html
+++ b/docs/_modules/pymatgen/analysis/thermochemistry.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -171,7 +170,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/transition_state.html b/docs/_modules/pymatgen/analysis/transition_state.html
index 1a7fdb2ab13..ce412cb6def 100644
--- a/docs/_modules/pymatgen/analysis/transition_state.html
+++ b/docs/_modules/pymatgen/analysis/transition_state.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -488,7 +487,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/wulff.html b/docs/_modules/pymatgen/analysis/wulff.html
index 5f50acc2485..4e18448c750 100644
--- a/docs/_modules/pymatgen/analysis/wulff.html
+++ b/docs/_modules/pymatgen/analysis/wulff.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -725,7 +724,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/analysis/xas/spectrum.html b/docs/_modules/pymatgen/analysis/xas/spectrum.html
index b777226d126..099368002f5 100644
--- a/docs/_modules/pymatgen/analysis/xas/spectrum.html
+++ b/docs/_modules/pymatgen/analysis/xas/spectrum.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -141,7 +140,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/_modules/pymatgen/apps/battery/analyzer.html b/docs/_modules/pymatgen/apps/battery/analyzer.html
index d8c7476639c..5a4f408f092 100644
--- a/docs/_modules/pymatgen/apps/battery/analyzer.html
+++ b/docs/_modules/pymatgen/apps/battery/analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
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@@ -304,7 +303,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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index 44e5080103f..3a3ba71e099 100644
--- a/docs/_modules/pymatgen/apps/battery/battery_abc.html
+++ b/docs/_modules/pymatgen/apps/battery/battery_abc.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
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@@ -429,7 +428,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/apps/battery/conversion_battery.html b/docs/_modules/pymatgen/apps/battery/conversion_battery.html
index fe621e4b7c9..5cb4be35b6f 100644
--- a/docs/_modules/pymatgen/apps/battery/conversion_battery.html
+++ b/docs/_modules/pymatgen/apps/battery/conversion_battery.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
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@@ -600,7 +599,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/apps/battery/insertion_battery.html b/docs/_modules/pymatgen/apps/battery/insertion_battery.html
index f07f6b0a1f0..f276449ffc8 100644
--- a/docs/_modules/pymatgen/apps/battery/insertion_battery.html
+++ b/docs/_modules/pymatgen/apps/battery/insertion_battery.html
@@ -13,7 +13,6 @@
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@@ -626,7 +625,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 96b7705b686..20c0ed48d11 100644
--- a/docs/_modules/pymatgen/apps/battery/plotter.html
+++ b/docs/_modules/pymatgen/apps/battery/plotter.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/apps/borg/hive.html b/docs/_modules/pymatgen/apps/borg/hive.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/apps/borg/queen.html b/docs/_modules/pymatgen/apps/borg/queen.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/feff_input_generation.html b/docs/_modules/pymatgen/cli/feff_input_generation.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/feff_plot_dos.html b/docs/_modules/pymatgen/cli/feff_plot_dos.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/gaussian_analyzer.html b/docs/_modules/pymatgen/cli/gaussian_analyzer.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/get_environment.html b/docs/_modules/pymatgen/cli/get_environment.html
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@@ -118,7 +117,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg.html b/docs/_modules/pymatgen/cli/pmg.html
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@@ -372,7 +371,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg_analyze.html b/docs/_modules/pymatgen/cli/pmg_analyze.html
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@@ -222,7 +221,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg_config.html b/docs/_modules/pymatgen/cli/pmg_config.html
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@@ -281,7 +280,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg_plot.html b/docs/_modules/pymatgen/cli/pmg_plot.html
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@@ -171,7 +170,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -126,7 +125,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg_query.html b/docs/_modules/pymatgen/cli/pmg_query.html
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@@ -138,7 +137,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/cli/pmg_structure.html b/docs/_modules/pymatgen/cli/pmg_structure.html
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@@ -184,7 +183,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -203,7 +202,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/command_line/bader_caller.html b/docs/_modules/pymatgen/command_line/bader_caller.html
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@@ -561,7 +560,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/command_line/critic2_caller.html b/docs/_modules/pymatgen/command_line/critic2_caller.html
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@@ -652,7 +651,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/command_line/enumlib_caller.html b/docs/_modules/pymatgen/command_line/enumlib_caller.html
index 7259c5b823f..fd52064a762 100644
--- a/docs/_modules/pymatgen/command_line/enumlib_caller.html
+++ b/docs/_modules/pymatgen/command_line/enumlib_caller.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -497,7 +496,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/command_line/gulp_caller.html b/docs/_modules/pymatgen/command_line/gulp_caller.html
index 8aade5db71c..30ffd004be0 100644
--- a/docs/_modules/pymatgen/command_line/gulp_caller.html
+++ b/docs/_modules/pymatgen/command_line/gulp_caller.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -799,7 +798,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/command_line/mcsqs_caller.html b/docs/_modules/pymatgen/command_line/mcsqs_caller.html
index cbd95e27e5f..839cc6bc48a 100644
--- a/docs/_modules/pymatgen/command_line/mcsqs_caller.html
+++ b/docs/_modules/pymatgen/command_line/mcsqs_caller.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -211,7 +210,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/command_line/vampire_caller.html b/docs/_modules/pymatgen/command_line/vampire_caller.html
index 6e2453b9efd..eb457212689 100644
--- a/docs/_modules/pymatgen/command_line/vampire_caller.html
+++ b/docs/_modules/pymatgen/command_line/vampire_caller.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -510,7 +509,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/bonds.html b/docs/_modules/pymatgen/core/bonds.html
index 7e4f4f302be..ec746cc386a 100644
--- a/docs/_modules/pymatgen/core/bonds.html
+++ b/docs/_modules/pymatgen/core/bonds.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -63,10 +62,8 @@ <h1>Source code for pymatgen.core.bonds</h1><div class="highlight"><pre>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2012, The Materials Project&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.1&quot;</span>
 <span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;shyuep@gmail.com&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;Jul 26, 2012&quot;</span>
 
 
 <span class="k">def</span> <span class="nf">_load_bond_length_data</span><span class="p">():</span>
@@ -158,7 +155,7 @@ <h1>Source code for pymatgen.core.bonds</h1><div class="highlight"><pre>
                 <span class="k">if</span> <span class="n">dist</span> <span class="o">&lt;</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">tol</span><span class="p">)</span> <span class="o">*</span> <span class="n">v</span><span class="p">:</span>
                     <span class="k">return</span> <span class="kc">True</span>
             <span class="k">return</span> <span class="kc">False</span>
-        <span class="k">elif</span> <span class="n">default_bl</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">default_bl</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">dist</span> <span class="o">&lt;</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">tol</span><span class="p">)</span> <span class="o">*</span> <span class="n">default_bl</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No bond data for elements </span><span class="si">{}</span><span class="s2"> - </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="n">syms</span><span class="p">))</span></div>
 
@@ -191,10 +188,9 @@ <h1>Source code for pymatgen.core.bonds</h1><div class="highlight"><pre>
     <span class="n">syms</span> <span class="o">=</span> <span class="nb">tuple</span><span class="p">(</span><span class="nb">sorted</span><span class="p">([</span><span class="n">sp1</span><span class="p">,</span> <span class="n">sp2</span><span class="p">]))</span>
     <span class="k">if</span> <span class="n">syms</span> <span class="ow">in</span> <span class="n">bond_lengths</span><span class="p">:</span>
         <span class="k">return</span> <span class="n">bond_lengths</span><span class="p">[</span><span class="n">syms</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
-    <span class="k">elif</span> <span class="n">default_bl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+    <span class="k">if</span> <span class="n">default_bl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
         <span class="k">return</span> <span class="p">{</span><span class="mi">1</span><span class="p">:</span> <span class="n">default_bl</span><span class="p">}</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No bond data for elements </span><span class="si">{}</span><span class="s2"> - </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="n">syms</span><span class="p">))</span></div>
+    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No bond data for elements </span><span class="si">{}</span><span class="s2"> - </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="n">syms</span><span class="p">))</span></div>
 
 
 <div class="viewcode-block" id="get_bond_order"><a class="viewcode-back" href="../../../pymatgen.core.bonds.html#pymatgen.core.bonds.get_bond_order">[docs]</a><span class="k">def</span> <span class="nf">get_bond_order</span><span class="p">(</span><span class="n">sp1</span><span class="p">,</span> <span class="n">sp2</span><span class="p">,</span> <span class="n">dist</span><span class="p">,</span> <span class="n">tol</span><span class="o">=</span><span class="mf">0.2</span><span class="p">,</span> <span class="n">default_bl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
@@ -228,10 +224,9 @@ <h1>Source code for pymatgen.core.bonds</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">lengths_list</span><span class="p">[</span><span class="n">trial_bond_order</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">dist</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">trial_bond_order</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
                 <span class="k">return</span> <span class="n">trial_bond_order</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">low_bl</span> <span class="o">=</span> <span class="n">lengths_list</span><span class="p">[</span><span class="n">trial_bond_order</span><span class="p">]</span>
-                <span class="n">high_bl</span> <span class="o">=</span> <span class="n">lengths_list</span><span class="p">[</span><span class="n">trial_bond_order</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-                <span class="k">return</span> <span class="n">trial_bond_order</span> <span class="o">-</span> <span class="p">(</span><span class="n">dist</span> <span class="o">-</span> <span class="n">low_bl</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">high_bl</span> <span class="o">-</span> <span class="n">low_bl</span><span class="p">)</span>
+            <span class="n">low_bl</span> <span class="o">=</span> <span class="n">lengths_list</span><span class="p">[</span><span class="n">trial_bond_order</span><span class="p">]</span>
+            <span class="n">high_bl</span> <span class="o">=</span> <span class="n">lengths_list</span><span class="p">[</span><span class="n">trial_bond_order</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+            <span class="k">return</span> <span class="n">trial_bond_order</span> <span class="o">-</span> <span class="p">(</span><span class="n">dist</span> <span class="o">-</span> <span class="n">low_bl</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">high_bl</span> <span class="o">-</span> <span class="n">low_bl</span><span class="p">)</span>
         <span class="n">trial_bond_order</span> <span class="o">+=</span> <span class="mi">1</span>
     <span class="c1"># Distance shorter than the shortest bond length stored,</span>
     <span class="c1"># check if the distance is too short</span>
@@ -311,7 +306,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/composition.html b/docs/_modules/pymatgen/core/composition.html
index 05a56c2b56d..bbc528a35c3 100644
--- a/docs/_modules/pymatgen/core/composition.html
+++ b/docs/_modules/pymatgen/core/composition.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -58,20 +57,17 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">numbers</span>
 <span class="kn">import</span> <span class="nn">string</span>
 <span class="kn">from</span> <span class="nn">itertools</span> <span class="k">import</span> <span class="n">combinations_with_replacement</span><span class="p">,</span> <span class="n">product</span>
-
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">re</span>
-
-<span class="kn">from</span> <span class="nn">collections</span> <span class="k">import</span> <span class="n">defaultdict</span>
 <span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">List</span>
-<span class="kn">from</span> <span class="nn">monty.serialization</span> <span class="k">import</span> <span class="n">loadfn</span>
-
 <span class="kn">from</span> <span class="nn">functools</span> <span class="k">import</span> <span class="n">total_ordering</span>
 
+<span class="kn">from</span> <span class="nn">monty.serialization</span> <span class="k">import</span> <span class="n">loadfn</span>
 <span class="kn">from</span> <span class="nn">monty.fractions</span> <span class="k">import</span> <span class="n">gcd</span><span class="p">,</span> <span class="n">gcd_float</span>
+<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.core.periodic_table</span> <span class="k">import</span> <span class="n">get_el_sp</span><span class="p">,</span> <span class="n">Element</span><span class="p">,</span> <span class="n">Specie</span><span class="p">,</span> <span class="n">DummySpecie</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.string</span> <span class="k">import</span> <span class="n">formula_double_format</span>
-<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.units</span> <span class="k">import</span> <span class="n">Mass</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
@@ -123,17 +119,13 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
 <span class="sd">    7.0</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Tolerance in distinguishing different composition amounts.</span>
-<span class="sd">    1e-8 is fairly tight, but should cut out most floating point arithmetic</span>
-<span class="sd">    errors.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Tolerance in distinguishing different composition amounts.</span>
+    <span class="c1"># 1e-8 is fairly tight, but should cut out most floating point arithmetic</span>
+    <span class="c1"># errors.</span>
     <span class="n">amount_tolerance</span> <span class="o">=</span> <span class="mf">1e-8</span>
 
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Special formula handling for peroxides and certain elements. This is so</span>
-<span class="sd">    that formula output does not write LiO instead of Li2O2 for example.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Special formula handling for peroxides and certain elements. This is so</span>
+    <span class="c1"># that formula output does not write LiO instead of Li2O2 for example.</span>
     <span class="n">special_formulas</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;LiO&quot;</span><span class="p">:</span> <span class="s2">&quot;Li2O2&quot;</span><span class="p">,</span> <span class="s2">&quot;NaO&quot;</span><span class="p">:</span> <span class="s2">&quot;Na2O2&quot;</span><span class="p">,</span> <span class="s2">&quot;KO&quot;</span><span class="p">:</span> <span class="s2">&quot;K2O2&quot;</span><span class="p">,</span>
                         <span class="s2">&quot;HO&quot;</span><span class="p">:</span> <span class="s2">&quot;H2O2&quot;</span><span class="p">,</span> <span class="s2">&quot;CsO&quot;</span><span class="p">:</span> <span class="s2">&quot;Cs2O2&quot;</span><span class="p">,</span> <span class="s2">&quot;RbO&quot;</span><span class="p">:</span> <span class="s2">&quot;Rb2O2&quot;</span><span class="p">,</span>
                         <span class="s2">&quot;O&quot;</span><span class="p">:</span> <span class="s2">&quot;O2&quot;</span><span class="p">,</span> <span class="s2">&quot;N&quot;</span><span class="p">:</span> <span class="s2">&quot;N2&quot;</span><span class="p">,</span> <span class="s2">&quot;F&quot;</span><span class="p">:</span> <span class="s2">&quot;F2&quot;</span><span class="p">,</span> <span class="s2">&quot;Cl&quot;</span><span class="p">:</span> <span class="s2">&quot;Cl2&quot;</span><span class="p">,</span>
@@ -233,7 +225,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
         <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">elements</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">elements</span><span class="p">)):</span>
             <span class="k">if</span> <span class="n">other</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">Composition</span><span class="o">.</span><span class="n">amount_tolerance</span><span class="p">:</span>
                 <span class="k">return</span> <span class="kc">False</span>
-            <span class="k">elif</span> <span class="bp">self</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">-</span> <span class="n">other</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">Composition</span><span class="o">.</span><span class="n">amount_tolerance</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">-</span> <span class="n">other</span><span class="p">[</span><span class="n">el</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">Composition</span><span class="o">.</span><span class="n">amount_tolerance</span><span class="p">:</span>
                 <span class="k">return</span> <span class="kc">True</span>
         <span class="k">return</span> <span class="kc">True</span>
 
@@ -593,8 +585,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="s2">&quot;block&quot;</span> <span class="ow">in</span> <span class="n">category</span><span class="p">:</span>
             <span class="k">return</span> <span class="nb">any</span><span class="p">([</span><span class="n">category</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">in</span> <span class="n">el</span><span class="o">.</span><span class="n">block</span> <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">elements</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="nb">any</span><span class="p">([</span><span class="nb">getattr</span><span class="p">(</span><span class="n">el</span><span class="p">,</span> <span class="s2">&quot;is_</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">category</span><span class="p">))</span> <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">elements</span><span class="p">])</span></div>
+        <span class="k">return</span> <span class="nb">any</span><span class="p">([</span><span class="nb">getattr</span><span class="p">(</span><span class="n">el</span><span class="p">,</span> <span class="s2">&quot;is_</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">category</span><span class="p">))</span> <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">elements</span><span class="p">])</span></div>
 
     <span class="k">def</span> <span class="nf">_parse_formula</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">formula</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -818,7 +809,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
             <span class="n">all_oxi_states</span><span class="p">,</span> <span class="n">max_sites</span><span class="p">,</span> <span class="n">oxi_states_override</span><span class="p">,</span> <span class="n">target_charge</span><span class="p">)</span>
 
         <span class="c1"># Special case: No charged compound is possible</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">oxidation_states</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">oxidation_states</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">Composition</span><span class="p">(</span><span class="nb">dict</span><span class="p">((</span><span class="n">Specie</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="mi">0</span><span class="p">),</span> <span class="n">f</span><span class="p">)</span> <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">f</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">items</span><span class="p">()))</span>
 
         <span class="c1"># Generate the species</span>
@@ -921,7 +912,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
         <span class="n">el_amt</span> <span class="o">=</span> <span class="n">comp</span><span class="o">.</span><span class="n">get_el_amt_dict</span><span class="p">()</span>
         <span class="n">els</span> <span class="o">=</span> <span class="n">el_amt</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
         <span class="n">el_sums</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># matrix: dim1= el_idx, dim2=possible sums</span>
-        <span class="n">el_sum_scores</span> <span class="o">=</span> <span class="n">defaultdict</span><span class="p">(</span><span class="nb">set</span><span class="p">)</span>  <span class="c1"># dict of el_idx, sum -&gt; score</span>
+        <span class="n">el_sum_scores</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">set</span><span class="p">)</span>  <span class="c1"># dict of el_idx, sum -&gt; score</span>
         <span class="n">el_best_oxid_combo</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># dict of el_idx, sum -&gt; oxid combo with best score</span>
         <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">el</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">els</span><span class="p">):</span>
             <span class="n">el_sum_scores</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
@@ -980,7 +971,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
                     <span class="nb">dict</span><span class="p">((</span><span class="n">e</span><span class="p">,</span> <span class="n">el_best_oxid_combo</span><span class="p">[</span><span class="n">idx</span><span class="p">][</span><span class="n">v</span><span class="p">])</span> <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">v</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">els</span><span class="p">,</span> <span class="n">x</span><span class="p">))))</span>
 
         <span class="c1"># sort the solutions by highest to lowest score</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">all_scores</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">all_scores</span><span class="p">:</span>
             <span class="n">all_sols</span><span class="p">,</span> <span class="n">all_oxid_combo</span> <span class="o">=</span> <span class="nb">zip</span><span class="p">(</span><span class="o">*</span><span class="p">[(</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="p">(</span><span class="n">z</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">all_scores</span><span class="p">,</span> <span class="n">all_sols</span><span class="p">,</span> <span class="n">all_oxid_combo</span><span class="p">),</span>
                                                                             <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">pair</span><span class="p">:</span> <span class="n">pair</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span>
                                                                             <span class="n">reverse</span><span class="o">=</span><span class="kc">True</span><span class="p">)])</span>
@@ -1027,7 +1018,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">all_matches</span></div>
 
     <span class="nd">@staticmethod</span>
-    <span class="k">def</span> <span class="nf">_comps_from_fuzzy_formula</span><span class="p">(</span><span class="n">fuzzy_formula</span><span class="p">,</span> <span class="n">m_dict</span><span class="o">=</span><span class="p">{},</span> <span class="n">m_points</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span>
+    <span class="k">def</span> <span class="nf">_comps_from_fuzzy_formula</span><span class="p">(</span><span class="n">fuzzy_formula</span><span class="p">,</span> <span class="n">m_dict</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">m_points</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span>
                                   <span class="n">factor</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        A recursive helper method for formula parsing that helps in</span>
@@ -1049,6 +1040,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
 <span class="sd">            the second element being the number of points awarded that</span>
 <span class="sd">            Composition intepretation.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">m_dict</span> <span class="o">=</span> <span class="n">m_dict</span> <span class="ow">or</span> <span class="p">{}</span>
 
         <span class="k">def</span> <span class="nf">_parse_chomp_and_rank</span><span class="p">(</span><span class="n">m</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="n">m_dict</span><span class="p">,</span> <span class="n">m_points</span><span class="p">):</span>
             <span class="sd">&quot;&quot;&quot;</span>
@@ -1239,8 +1231,7 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
 
 
 <div class="viewcode-block" id="CompositionError"><a class="viewcode-back" href="../../../pymatgen.core.composition.html#pymatgen.core.composition.CompositionError">[docs]</a><span class="k">class</span> <span class="nc">CompositionError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Exception class for composition errors&quot;&quot;&quot;</span>
-    <span class="k">pass</span></div>
+    <span class="sd">&quot;&quot;&quot;Exception class for composition errors&quot;&quot;&quot;</span></div>
 
 
 <div class="viewcode-block" id="ChemicalPotential"><a class="viewcode-back" href="../../../pymatgen.core.composition.html#pymatgen.core.composition.ChemicalPotential">[docs]</a><span class="k">class</span> <span class="nc">ChemicalPotential</span><span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">MSONable</span><span class="p">):</span>
@@ -1265,16 +1256,14 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">numbers</span><span class="o">.</span><span class="n">Number</span><span class="p">):</span>
             <span class="k">return</span> <span class="n">ChemicalPotential</span><span class="p">({</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="o">*</span> <span class="n">other</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">items</span><span class="p">()})</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
+        <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">()</span>
 
     <span class="fm">__rmul__</span> <span class="o">=</span> <span class="fm">__mul__</span>
 
     <span class="k">def</span> <span class="nf">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">numbers</span><span class="o">.</span><span class="n">Number</span><span class="p">):</span>
             <span class="k">return</span> <span class="n">ChemicalPotential</span><span class="p">({</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="o">/</span> <span class="n">other</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">items</span><span class="p">()})</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
+        <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">()</span>
 
     <span class="n">__div__</span> <span class="o">=</span> <span class="fm">__truediv__</span>
 
@@ -1283,16 +1272,14 @@ <h1>Source code for pymatgen.core.composition</h1><div class="highlight"><pre>
             <span class="n">els</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="n">other</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
             <span class="k">return</span> <span class="n">ChemicalPotential</span><span class="p">({</span><span class="n">e</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
                                       <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">els</span><span class="p">})</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
+        <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">()</span>
 
     <span class="k">def</span> <span class="nf">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">ChemicalPotential</span><span class="p">):</span>
             <span class="n">els</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="n">other</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
             <span class="k">return</span> <span class="n">ChemicalPotential</span><span class="p">({</span><span class="n">e</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
                                       <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">els</span><span class="p">})</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
+        <span class="k">raise</span> <span class="ne">NotImplementedError</span><span class="p">()</span>
 
 <div class="viewcode-block" id="ChemicalPotential.get_energy"><a class="viewcode-back" href="../../../pymatgen.core.composition.html#pymatgen.core.composition.ChemicalPotential.get_energy">[docs]</a>    <span class="k">def</span> <span class="nf">get_energy</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">composition</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -1353,7 +1340,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/ion.html b/docs/_modules/pymatgen/core/ion.html
index fb86fda816d..96e3cb6134f 100644
--- a/docs/_modules/pymatgen/core/ion.html
+++ b/docs/_modules/pymatgen/core/ion.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -53,20 +52,14 @@ <h1>Source code for pymatgen.core.ion</h1><div class="highlight"><pre>
 <span class="sd">Module containing class to create an ion</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
-<span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Sai Jayaraman&quot;</span>
-<span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2012, The Materials Project&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0&quot;</span>
-<span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Sai Jayaraman&quot;</span>
-<span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;sjayaram@mit.edu&quot;</span>
-<span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Production&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;Dec 10, 2012&quot;</span>
-
 <span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">copy</span> <span class="k">import</span> <span class="n">deepcopy</span>
 
-<span class="kn">from</span> <span class="nn">pymatgen.core.composition</span> <span class="k">import</span> <span class="n">Composition</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+
+<span class="kn">from</span> <span class="nn">pymatgen.core.composition</span> <span class="k">import</span> <span class="n">Composition</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.string</span> <span class="k">import</span> <span class="n">formula_double_format</span>
 
 
@@ -306,7 +299,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/lattice.html b/docs/_modules/pymatgen/core/lattice.html
index e44c68bc8fd..de3efb691b3 100644
--- a/docs/_modules/pymatgen/core/lattice.html
+++ b/docs/_modules/pymatgen/core/lattice.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -56,30 +55,27 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">math</span>
 <span class="kn">import</span> <span class="nn">itertools</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
-
 <span class="kn">from</span> <span class="nn">functools</span> <span class="k">import</span> <span class="n">reduce</span>
-<span class="kn">from</span> <span class="nn">math</span> <span class="k">import</span> <span class="n">gcd</span>
+<span class="kn">import</span> <span class="nn">collections</span>
 
 <span class="kn">from</span> <span class="nn">fractions</span> <span class="k">import</span> <span class="n">Fraction</span>
-
 <span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Iterator</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Sequence</span>
-<span class="kn">from</span> <span class="nn">pymatgen.util.typing</span> <span class="k">import</span> <span class="n">Vector3Like</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">numpy.linalg</span> <span class="k">import</span> <span class="n">inv</span>
 <span class="kn">from</span> <span class="nn">numpy</span> <span class="k">import</span> <span class="n">pi</span><span class="p">,</span> <span class="n">dot</span><span class="p">,</span> <span class="n">transpose</span>
 
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+<span class="kn">from</span> <span class="nn">monty.dev</span> <span class="k">import</span> <span class="n">deprecated</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.util.coord</span> <span class="k">import</span> <span class="n">pbc_shortest_vectors</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.num</span> <span class="k">import</span> <span class="n">abs_cap</span>
+<span class="kn">from</span> <span class="nn">pymatgen.util.typing</span> <span class="k">import</span> <span class="n">Vector3Like</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong, Michael Kocher&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2011, The Materials Project&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.0&quot;</span>
 <span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;shyuep@gmail.com&quot;</span>
-<span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Production&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;Sep 23, 2011&quot;</span>
 
 
 <div class="viewcode-block" id="Lattice"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice">[docs]</a><span class="k">class</span> <span class="nc">Lattice</span><span class="p">(</span><span class="n">MSONable</span><span class="p">):</span>
@@ -166,7 +162,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
         <span class="k">elif</span> <span class="n">fmt_spec</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;p&quot;</span><span class="p">):</span>
             <span class="n">fmt</span> <span class="o">=</span> <span class="s2">&quot;{{</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">}}&quot;</span>
             <span class="n">fmt_spec</span> <span class="o">=</span> <span class="n">fmt_spec</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-            <span class="n">m</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+            <span class="n">m</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">lengths</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">angles</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">fmt</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="se">\n</span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="se">\n</span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="s2"> </span><span class="si">{}</span><span class="s2">&quot;</span>
         <span class="k">return</span> <span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="p">[</span><span class="nb">format</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="n">fmt_spec</span><span class="p">)</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">m</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">row</span><span class="p">])</span>
@@ -239,7 +235,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 <span class="sd">        Returns:</span>
 <span class="sd">            Lattice coordinates.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">cart_coords</span><span class="p">)</span></div>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">cart_coords</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="Lattice.d_hkl"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.d_hkl">[docs]</a>    <span class="k">def</span> <span class="nf">d_hkl</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">miller_index</span><span class="p">:</span> <span class="n">Vector3Like</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">float</span><span class="p">:</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -344,7 +340,8 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">alpha</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Lattice.from_lengths_and_angles"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.from_lengths_and_angles">[docs]</a>    <span class="nd">@staticmethod</span>
+    <span class="nd">@staticmethod</span>
+    <span class="nd">@deprecated</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">&quot;Use Lattice.from_parameters instead. This will be removed in v2020.*&quot;</span><span class="p">)</span>
     <span class="k">def</span> <span class="nf">from_lengths_and_angles</span><span class="p">(</span><span class="n">abc</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">float</span><span class="p">],</span> <span class="n">ang</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">float</span><span class="p">]):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Create a Lattice using unit cell lengths and angles (in degrees).</span>
@@ -356,7 +353,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 <span class="sd">        Returns:</span>
 <span class="sd">            A Lattice with the specified lattice parameters.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">abc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">abc</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">abc</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span></div>
+        <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">abc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">abc</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">abc</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">ang</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
 
 <div class="viewcode-block" id="Lattice.from_parameters"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.from_parameters">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_parameters</span><span class="p">(</span>
@@ -435,10 +432,8 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="s2">&quot;matrix&quot;</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;matrix&quot;</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span>
-                <span class="n">d</span><span class="p">[</span><span class="s2">&quot;a&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;b&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;c&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;alpha&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;beta&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;gamma&quot;</span><span class="p">]</span>
-            <span class="p">)</span></div>
+        <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;a&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;b&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;c&quot;</span><span class="p">],</span>
+                                   <span class="n">d</span><span class="p">[</span><span class="s2">&quot;alpha&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;beta&quot;</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;gamma&quot;</span><span class="p">])</span></div>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">a</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">float</span><span class="p">:</span>
@@ -498,6 +493,14 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cross</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">m</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">])))</span>
 
     <span class="nd">@property</span>
+    <span class="k">def</span> <span class="nf">parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Returns: (a, b, c, alpha, beta, gamma).</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">return</span> <span class="p">(</span><span class="o">*</span><span class="bp">self</span><span class="o">.</span><span class="n">lengths</span><span class="p">,</span> <span class="o">*</span><span class="bp">self</span><span class="o">.</span><span class="n">angles</span><span class="p">)</span>
+
+    <span class="nd">@property</span>  <span class="c1"># type: ignore</span>
+    <span class="nd">@deprecated</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">&quot;Use Lattice.parameters instead. This will be removed in v2020.*&quot;</span><span class="p">)</span>
     <span class="k">def</span> <span class="nf">lengths_and_angles</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Tuple</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">],</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]]:</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Returns (lattice lengths, lattice angles).</span>
@@ -596,7 +599,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
             <span class="s2">&quot;@class&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span><span class="p">,</span>
             <span class="s2">&quot;matrix&quot;</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">_matrix</span><span class="o">.</span><span class="n">tolist</span><span class="p">(),</span>
         <span class="p">}</span>
-        <span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">),</span> <span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span><span class="p">)</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">parameters</span>
         <span class="k">if</span> <span class="n">verbosity</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
             <span class="n">d</span><span class="o">.</span><span class="n">update</span><span class="p">(</span>
                 <span class="p">{</span>
@@ -646,8 +649,8 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 
 <span class="sd">            None is returned if no matches are found.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="p">(</span><span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span><span class="p">)</span> <span class="o">=</span> <span class="n">other_lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-        <span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span><span class="p">)</span> <span class="o">=</span> <span class="n">angles</span>
+        <span class="n">lengths</span> <span class="o">=</span> <span class="n">other_lattice</span><span class="o">.</span><span class="n">lengths</span>
+        <span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span><span class="p">)</span> <span class="o">=</span> <span class="n">other_lattice</span><span class="o">.</span><span class="n">angles</span>
 
         <span class="n">frac</span><span class="p">,</span> <span class="n">dist</span><span class="p">,</span> <span class="n">_</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_points_in_sphere</span><span class="p">(</span>
             <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="nb">max</span><span class="p">(</span><span class="n">lengths</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">ltol</span><span class="p">),</span> <span class="n">zip_results</span><span class="o">=</span><span class="kc">False</span>
@@ -807,7 +810,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
                 <span class="c1"># Update the Gram-Schmidt coefficients</span>
                 <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="n">k</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
                     <span class="n">u</span><span class="p">[</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)]</span> <span class="o">=</span> <span class="p">(</span>
-                            <span class="n">dot</span><span class="p">(</span><span class="n">a</span><span class="p">[:,</span> <span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">b</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)])</span> <span class="o">/</span> <span class="n">m</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)]</span>
+                        <span class="n">dot</span><span class="p">(</span><span class="n">a</span><span class="p">[:,</span> <span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">b</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)])</span> <span class="o">/</span> <span class="n">m</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)]</span>
                     <span class="p">)</span>
                     <span class="n">b</span><span class="p">[:,</span> <span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">a</span><span class="p">[:,</span> <span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">dot</span><span class="p">(</span>
                         <span class="n">b</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)],</span> <span class="n">u</span><span class="p">[</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">:</span> <span class="p">(</span><span class="n">s</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)]</span><span class="o">.</span><span class="n">T</span>
@@ -975,8 +978,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">mapped</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">(</span><span class="n">mapped</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">matrix</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
                 <span class="k">return</span> <span class="n">mapped</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">Lattice</span><span class="p">(</span><span class="o">-</span><span class="n">mapped</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">matrix</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">Lattice</span><span class="p">(</span><span class="o">-</span><span class="n">mapped</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">matrix</span><span class="p">)</span>
 
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;can&#39;t find niggli&quot;</span><span class="p">)</span></div>
 
@@ -1102,6 +1104,57 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
             <span class="n">center</span><span class="p">:</span> <span class="n">Vector3Like</span><span class="p">,</span>
             <span class="n">r</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
             <span class="n">zip_results</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+    <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span>
+        <span class="n">List</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]],</span>
+        <span class="n">List</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">],</span>
+    <span class="p">]:</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Find all points within a sphere from the point taking into account</span>
+<span class="sd">        periodic boundary conditions. This includes sites in other periodic</span>
+<span class="sd">        images.</span>
+
+<span class="sd">        Algorithm:</span>
+
+<span class="sd">        1. place sphere of radius r in crystal and determine minimum supercell</span>
+<span class="sd">           (parallelpiped) which would contain a sphere of radius r. for this</span>
+<span class="sd">           we need the projection of a_1 on a unit vector perpendicular</span>
+<span class="sd">           to a_2 &amp; a_3 (i.e. the unit vector in the direction b_1) to</span>
+<span class="sd">           determine how many a_1&quot;s it will take to contain the sphere.</span>
+
+<span class="sd">           Nxmax = r * length_of_b_1 / (2 Pi)</span>
+
+<span class="sd">        2. keep points falling within r.</span>
+
+<span class="sd">        Args:</span>
+<span class="sd">            frac_points: All points in the lattice in fractional coordinates.</span>
+<span class="sd">            center: Cartesian coordinates of center of sphere.</span>
+<span class="sd">            r: radius of sphere.</span>
+<span class="sd">            zip_results (bool): Whether to zip the results together to group by</span>
+<span class="sd">                 point, or return the raw fcoord, dist, index arrays</span>
+
+<span class="sd">        Returns:</span>
+<span class="sd">            if zip_results:</span>
+<span class="sd">                [(fcoord, dist, index, supercell_image) ...] since most of the time, subsequent</span>
+<span class="sd">                processing requires the distance, index number of the atom, or index of the image</span>
+<span class="sd">            else:</span>
+<span class="sd">                fcoords, dists, inds, image</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">cart_coords</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_cartesian_coords</span><span class="p">(</span><span class="n">frac_points</span><span class="p">)</span>
+        <span class="n">neighbors</span> <span class="o">=</span> <span class="n">get_points_in_spheres</span><span class="p">(</span><span class="n">all_coords</span><span class="o">=</span><span class="n">cart_coords</span><span class="p">,</span> <span class="n">center_coords</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">center</span><span class="p">]),</span> <span class="n">r</span><span class="o">=</span><span class="n">r</span><span class="p">,</span> <span class="n">pbc</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                                          <span class="n">numerical_tol</span><span class="o">=</span><span class="mf">1e-8</span><span class="p">,</span> <span class="n">lattice</span><span class="o">=</span><span class="bp">self</span><span class="p">,</span> <span class="n">return_fcoords</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">neighbors</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">[]</span> <span class="k">if</span> <span class="n">zip_results</span> <span class="k">else</span> <span class="p">[()]</span> <span class="o">*</span> <span class="mi">4</span>
+        <span class="k">if</span> <span class="n">zip_results</span><span class="p">:</span>
+            <span class="k">return</span> <span class="n">neighbors</span>
+        <span class="k">return</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="o">*</span><span class="n">neighbors</span><span class="p">))]</span></div>
+
+    <span class="nd">@deprecated</span><span class="p">(</span><span class="n">get_points_in_sphere</span><span class="p">,</span> <span class="s2">&quot;This is retained purely for checking purposes.&quot;</span><span class="p">)</span>
+    <span class="k">def</span> <span class="nf">get_points_in_sphere_old</span><span class="p">(</span>
+            <span class="bp">self</span><span class="p">,</span>
+            <span class="n">frac_points</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Vector3Like</span><span class="p">],</span>
+            <span class="n">center</span><span class="p">:</span> <span class="n">Vector3Like</span><span class="p">,</span>
+            <span class="n">r</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
+            <span class="n">zip_results</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
     <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span>
         <span class="n">List</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]],</span>
         <span class="n">Tuple</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">],</span> <span class="n">List</span><span class="p">[</span><span class="nb">float</span><span class="p">],</span> <span class="n">List</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">List</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]],</span>
@@ -1190,13 +1243,12 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
                     <span class="n">images</span><span class="p">[</span><span class="n">within_r</span><span class="p">[</span><span class="mi">1</span><span class="p">:]],</span>
                 <span class="p">)</span>
             <span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="p">(</span>
-                <span class="n">shifted_coords</span><span class="p">[</span><span class="n">within_r</span><span class="p">],</span>
-                <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">d_2</span><span class="p">[</span><span class="n">within_r</span><span class="p">]),</span>
-                <span class="n">indices</span><span class="p">[</span><span class="n">within_r</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span>
-                <span class="n">images</span><span class="p">[</span><span class="n">within_r</span><span class="p">[</span><span class="mi">1</span><span class="p">:]],</span>
-            <span class="p">)</span></div>
+        <span class="k">return</span> <span class="p">(</span>
+            <span class="n">shifted_coords</span><span class="p">[</span><span class="n">within_r</span><span class="p">],</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">d_2</span><span class="p">[</span><span class="n">within_r</span><span class="p">]),</span>
+            <span class="n">indices</span><span class="p">[</span><span class="n">within_r</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span>
+            <span class="n">images</span><span class="p">[</span><span class="n">within_r</span><span class="p">[</span><span class="mi">1</span><span class="p">:]],</span>
+        <span class="p">)</span>
 
 <div class="viewcode-block" id="Lattice.get_all_distances"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.get_all_distances">[docs]</a>    <span class="k">def</span> <span class="nf">get_all_distances</span><span class="p">(</span>
             <span class="bp">self</span><span class="p">,</span>
@@ -1231,16 +1283,16 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
 <span class="sd">        :param hex_length_tol: Length tolerance</span>
 <span class="sd">        :return: Whether lattice corresponds to hexagonal lattice.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+        <span class="n">lengths</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lengths</span>
+        <span class="n">angles</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">angles</span>
         <span class="n">right_angles</span> <span class="o">=</span> <span class="p">[</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="mi">90</span><span class="p">)</span> <span class="o">&lt;</span> <span class="n">hex_angle_tol</span><span class="p">]</span>
         <span class="n">hex_angles</span> <span class="o">=</span> <span class="p">[</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span>
                       <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="mi">60</span><span class="p">)</span> <span class="o">&lt;</span> <span class="n">hex_angle_tol</span> <span class="ow">or</span> <span class="nb">abs</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="mi">120</span><span class="p">)</span> <span class="o">&lt;</span> <span class="n">hex_angle_tol</span><span class="p">]</span>
 
         <span class="k">return</span> <span class="p">(</span>
-                <span class="nb">len</span><span class="p">(</span><span class="n">right_angles</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
-                <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">hex_angles</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
-                <span class="ow">and</span> <span class="nb">abs</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="n">right_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">-</span> <span class="n">lengths</span><span class="p">[</span><span class="n">right_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">]])</span>
-                <span class="o">&lt;</span> <span class="n">hex_length_tol</span>
+            <span class="nb">len</span><span class="p">(</span><span class="n">right_angles</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span>
+            <span class="nb">len</span><span class="p">(</span><span class="n">hex_angles</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span>
+            <span class="nb">abs</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="n">right_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">-</span> <span class="n">lengths</span><span class="p">[</span><span class="n">right_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">]])</span> <span class="o">&lt;</span> <span class="n">hex_length_tol</span>
         <span class="p">)</span></div>
 
 <div class="viewcode-block" id="Lattice.get_distance_and_image"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.get_distance_and_image">[docs]</a>    <span class="k">def</span> <span class="nf">get_distance_and_image</span><span class="p">(</span>
@@ -1375,7 +1427,7 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
     <span class="n">md</span> <span class="o">=</span> <span class="p">[</span><span class="n">Fraction</span><span class="p">(</span><span class="n">n</span><span class="p">)</span><span class="o">.</span><span class="n">limit_denominator</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span><span class="o">.</span><span class="n">denominator</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">mi</span><span class="p">]</span>
     <span class="n">mi</span> <span class="o">*=</span> <span class="n">reduce</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">:</span> <span class="n">x</span> <span class="o">*</span> <span class="n">y</span><span class="p">,</span> <span class="n">md</span><span class="p">)</span>
     <span class="n">int_miller_index</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">int_</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">mi</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-    <span class="n">mi</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">reduce</span><span class="p">(</span><span class="n">gcd</span><span class="p">,</span> <span class="n">int_miller_index</span><span class="p">))</span>
+    <span class="n">mi</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">reduce</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">gcd</span><span class="p">,</span> <span class="n">int_miller_index</span><span class="p">))</span>
 
     <span class="c1"># round to a reasonable precision</span>
     <span class="n">mi</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="nb">round</span><span class="p">(</span><span class="n">h</span><span class="p">,</span> <span class="n">round_dp</span><span class="p">)</span> <span class="k">for</span> <span class="n">h</span> <span class="ow">in</span> <span class="n">mi</span><span class="p">])</span>
@@ -1406,6 +1458,193 @@ <h1>Source code for pymatgen.core.lattice</h1><div class="highlight"><pre>
         <span class="n">mi</span> <span class="o">*=</span> <span class="o">-</span><span class="mi">1</span>
 
     <span class="k">return</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">mi</span><span class="p">)</span>  <span class="c1"># type: ignore</span></div>
+
+
+<div class="viewcode-block" id="get_points_in_spheres"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.get_points_in_spheres">[docs]</a><span class="k">def</span> <span class="nf">get_points_in_spheres</span><span class="p">(</span><span class="n">all_coords</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">center_coords</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">r</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
+                          <span class="n">pbc</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">bool</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">bool</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">True</span><span class="p">,</span> <span class="n">numerical_tol</span><span class="p">:</span> <span class="nb">float</span> <span class="o">=</span> <span class="mf">1e-8</span><span class="p">,</span>
+                          <span class="n">lattice</span><span class="p">:</span> <span class="n">Lattice</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">return_fcoords</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">,</span>
+                          <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]]]:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    For each point in `center_coords`, get all the neighboring points in `all_coords` that are within the</span>
+<span class="sd">    cutoff radius `r`.</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        all_coords: (list of cartesian coordinates) all available points</span>
+<span class="sd">        center_coords: (list of cartesian coordinates) all centering points</span>
+<span class="sd">        r: (float) cutoff radius</span>
+<span class="sd">        pbc: (bool or a list of bool) whether to set periodic boundaries</span>
+<span class="sd">        numerical_tol: (float) numerical tolerance</span>
+<span class="sd">        lattice: (Lattice) lattice to consider when PBC is enabled</span>
+<span class="sd">        return_fcoords: (bool) whether to return fractional coords when pbc is set.</span>
+<span class="sd">    Returns:</span>
+<span class="sd">        List[List[Tuple[coords, distance, index, image]]]</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">pbc</span><span class="p">,</span> <span class="nb">bool</span><span class="p">):</span>
+        <span class="n">pbc</span> <span class="o">=</span> <span class="p">[</span><span class="n">pbc</span><span class="p">]</span> <span class="o">*</span> <span class="mi">3</span>
+    <span class="k">if</span> <span class="n">return_fcoords</span> <span class="ow">and</span> <span class="n">lattice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Lattice needs to be supplied to compute fractional coordinates&quot;</span><span class="p">)</span>
+    <span class="n">center_coords_min</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">center_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+    <span class="n">center_coords_max</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">center_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+    <span class="c1"># The lower bound of all considered atom coords</span>
+    <span class="n">global_min</span> <span class="o">=</span> <span class="n">center_coords_min</span> <span class="o">-</span> <span class="n">r</span> <span class="o">-</span> <span class="n">numerical_tol</span>
+    <span class="n">global_max</span> <span class="o">=</span> <span class="n">center_coords_max</span> <span class="o">+</span> <span class="n">r</span> <span class="o">+</span> <span class="n">numerical_tol</span>
+
+    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="n">pbc</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">lattice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Lattice needs to be supplied when considering periodic boundary&quot;</span><span class="p">)</span>
+        <span class="n">recp_len</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">lattice</span><span class="o">.</span><span class="n">reciprocal_lattice</span><span class="o">.</span><span class="n">abc</span><span class="p">)</span>
+        <span class="n">maxr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ceil</span><span class="p">((</span><span class="n">r</span> <span class="o">+</span> <span class="mf">0.15</span><span class="p">)</span> <span class="o">*</span> <span class="n">recp_len</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span><span class="p">))</span>
+        <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">center_coords</span><span class="p">)</span>
+        <span class="n">nmin_temp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">frac_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span> <span class="o">-</span> <span class="n">maxr</span>
+        <span class="n">nmax_temp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">frac_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span> <span class="o">+</span> <span class="n">maxr</span>
+        <span class="n">nmin</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">nmin_temp</span><span class="p">)</span>
+        <span class="n">nmin</span><span class="p">[</span><span class="n">pbc</span><span class="p">]</span> <span class="o">=</span> <span class="n">nmin_temp</span><span class="p">[</span><span class="n">pbc</span><span class="p">]</span>
+        <span class="n">nmax</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones_like</span><span class="p">(</span><span class="n">nmax_temp</span><span class="p">)</span>
+        <span class="n">nmax</span><span class="p">[</span><span class="n">pbc</span><span class="p">]</span> <span class="o">=</span> <span class="n">nmax_temp</span><span class="p">[</span><span class="n">pbc</span><span class="p">]</span>
+        <span class="n">all_ranges</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="s1">&#39;int64&#39;</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nmin</span><span class="p">,</span> <span class="n">nmax</span><span class="p">)]</span>
+        <span class="n">matrix</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">matrix</span>
+
+        <span class="n">all_fcoords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">(</span><span class="n">lattice</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">all_coords</span><span class="p">),</span> <span class="mi">1</span><span class="p">)</span>
+        <span class="n">coords_in_cell</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">all_fcoords</span><span class="p">,</span> <span class="n">matrix</span><span class="p">)</span>
+
+        <span class="c1"># Filter out those beyond max range</span>
+        <span class="n">valid_coords</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">valid_images</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">valid_indices</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">image</span> <span class="ow">in</span> <span class="n">itertools</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="o">*</span><span class="n">all_ranges</span><span class="p">):</span>
+            <span class="n">coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">image</span><span class="p">,</span> <span class="n">matrix</span><span class="p">)</span> <span class="o">+</span> <span class="n">coords_in_cell</span>
+            <span class="n">valid_index_bool</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">bitwise_and</span><span class="p">(</span><span class="n">coords</span> <span class="o">&gt;</span> <span class="n">global_min</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:],</span> <span class="n">coords</span> <span class="o">&lt;</span> <span class="n">global_max</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:]),</span>
+                                      <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+            <span class="n">ind</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">all_coords</span><span class="p">))</span>
+            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">valid_index_bool</span><span class="p">):</span>
+                <span class="n">valid_coords</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">coords</span><span class="p">[</span><span class="n">valid_index_bool</span><span class="p">])</span>
+                <span class="n">valid_images</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tile</span><span class="p">(</span><span class="n">image</span><span class="p">,</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">valid_index_bool</span><span class="p">),</span> <span class="mi">1</span><span class="p">]))</span>
+                <span class="n">valid_indices</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ind</span> <span class="k">if</span> <span class="n">valid_index_bool</span><span class="p">[</span><span class="n">k</span><span class="p">]])</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">[[]]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">center_coords</span><span class="p">)</span>
+        <span class="n">valid_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="n">valid_images</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">valid_images</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">valid_coords</span> <span class="o">=</span> <span class="n">all_coords</span>
+        <span class="n">valid_images</span> <span class="o">=</span> <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">)</span>
+        <span class="n">valid_indices</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">))</span>
+
+    <span class="c1"># Divide the valid 3D space into cubes and compute the cube ids</span>
+    <span class="n">all_cube_index</span> <span class="o">=</span> <span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">)</span>
+    <span class="n">nx</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span> <span class="o">=</span> <span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">global_max</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
+    <span class="n">all_cube_index</span> <span class="o">=</span> <span class="n">_three_to_one</span><span class="p">(</span><span class="n">all_cube_index</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="n">site_cube_index</span> <span class="o">=</span> <span class="n">_three_to_one</span><span class="p">(</span><span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">center_coords</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">),</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="c1"># create cube index to coordinates, images, and indices map</span>
+    <span class="n">cube_to_coords</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
+    <span class="n">cube_to_images</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
+    <span class="n">cube_to_indices</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
+    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">l</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">all_cube_index</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">valid_coords</span><span class="p">,</span>
+                          <span class="n">valid_images</span><span class="p">,</span> <span class="n">valid_indices</span><span class="p">):</span>
+        <span class="n">cube_to_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">j</span><span class="p">)</span>
+        <span class="n">cube_to_images</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span><span class="p">)</span>
+        <span class="n">cube_to_indices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">l</span><span class="p">)</span>
+
+    <span class="c1"># find all neighboring cubes for each atom in the lattice cell</span>
+    <span class="n">site_neighbors</span> <span class="o">=</span> <span class="n">find_neighbors</span><span class="p">(</span><span class="n">site_cube_index</span><span class="p">,</span> <span class="n">nx</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="n">neighbors</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># type: List[List[Tuple[np.ndarray, float, int, np.ndarray]]]</span>
+
+    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">center_coords</span><span class="p">,</span> <span class="n">site_neighbors</span><span class="p">):</span>
+        <span class="n">l1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">_three_to_one</span><span class="p">(</span><span class="n">j</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
+        <span class="c1"># use the cube index map to find the all the neighboring</span>
+        <span class="c1"># coords, images, and indices</span>
+        <span class="n">ks</span> <span class="o">=</span> <span class="p">[</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">l1</span> <span class="k">if</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">cube_to_coords</span><span class="p">]</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">ks</span><span class="p">:</span>
+            <span class="n">neighbors</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+            <span class="k">continue</span>
+        <span class="n">nn_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">cube_to_coords</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="n">nn_images</span> <span class="o">=</span> <span class="n">itertools</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="o">*</span><span class="p">[</span><span class="n">cube_to_images</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">])</span>
+        <span class="n">nn_indices</span> <span class="o">=</span> <span class="n">itertools</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="o">*</span><span class="p">[</span><span class="n">cube_to_indices</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">])</span>
+        <span class="n">dist</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">nn_coords</span> <span class="o">-</span> <span class="n">i</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+        <span class="n">nns</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">coord</span><span class="p">,</span> <span class="n">index</span><span class="p">,</span> <span class="n">image</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nn_coords</span><span class="p">,</span> <span class="n">nn_indices</span><span class="p">,</span> <span class="n">nn_images</span><span class="p">,</span> <span class="n">dist</span><span class="p">):</span>
+            <span class="c1"># filtering out all sites that are beyond the cutoff</span>
+            <span class="c1"># Here there is no filtering of overlapping sites</span>
+            <span class="k">if</span> <span class="n">d</span> <span class="o">&lt;</span> <span class="n">r</span> <span class="o">+</span> <span class="n">numerical_tol</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">return_fcoords</span> <span class="ow">and</span> <span class="p">(</span><span class="n">lattice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">):</span>
+                    <span class="n">coord</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">lattice</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">coord</span><span class="p">),</span> <span class="mi">10</span><span class="p">)</span>
+                <span class="n">nn</span> <span class="o">=</span> <span class="p">(</span><span class="n">coord</span><span class="p">,</span> <span class="nb">float</span><span class="p">(</span><span class="n">d</span><span class="p">),</span> <span class="nb">int</span><span class="p">(</span><span class="n">index</span><span class="p">),</span> <span class="n">image</span><span class="p">)</span>
+                <span class="n">nns</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nn</span><span class="p">)</span>
+        <span class="n">neighbors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nns</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">neighbors</span></div>
+
+
+<span class="c1"># The following internal methods are used in the get_points_in_sphere method.</span>
+<span class="k">def</span> <span class="nf">_compute_cube_index</span><span class="p">(</span><span class="n">coords</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">global_min</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span> <span class="n">radius</span><span class="p">:</span> <span class="nb">float</span>
+                        <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Compute the cube index from coordinates</span>
+<span class="sd">    Args:</span>
+<span class="sd">        coords: (nx3 array) atom coordinates</span>
+<span class="sd">        global_min: (float) lower boundary of coordinates</span>
+<span class="sd">        radius: (float) cutoff radius</span>
+
+<span class="sd">    Returns: (nx3 array) int indices</span>
+
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">((</span><span class="n">coords</span> <span class="o">-</span> <span class="n">global_min</span><span class="p">)</span> <span class="o">/</span> <span class="n">radius</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+
+
+<span class="k">def</span> <span class="nf">_one_to_three</span><span class="p">(</span><span class="n">label1d</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">ny</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">nz</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Convert a 1D index array to 3D index array</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        label1d: (array) 1D index array</span>
+<span class="sd">        ny: (int) number of cells in y direction</span>
+<span class="sd">        nz: (int) number of cells in z direction</span>
+
+<span class="sd">    Returns: (nx3) int array of index</span>
+
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">last</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">(</span><span class="n">label1d</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="n">second</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">((</span><span class="n">label1d</span> <span class="o">-</span> <span class="n">last</span><span class="p">)</span> <span class="o">/</span> <span class="n">nz</span><span class="p">,</span> <span class="n">ny</span><span class="p">)</span>
+    <span class="n">first</span> <span class="o">=</span> <span class="p">(</span><span class="n">label1d</span> <span class="o">-</span> <span class="n">last</span> <span class="o">-</span> <span class="n">second</span> <span class="o">*</span> <span class="n">nz</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">ny</span> <span class="o">*</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">first</span><span class="p">,</span> <span class="n">second</span><span class="p">,</span> <span class="n">last</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+
+
+<span class="k">def</span> <span class="nf">_three_to_one</span><span class="p">(</span><span class="n">label3d</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">ny</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">nz</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    The reverse of _one_to_three</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">label3d</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">ny</span> <span class="o">*</span> <span class="n">nz</span> <span class="o">+</span>
+                    <span class="n">label3d</span><span class="p">[:,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">nz</span> <span class="o">+</span> <span class="n">label3d</span><span class="p">[:,</span> <span class="mi">2</span><span class="p">])</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+
+
+<div class="viewcode-block" id="find_neighbors"><a class="viewcode-back" href="../../../pymatgen.core.lattice.html#pymatgen.core.lattice.find_neighbors">[docs]</a><span class="k">def</span> <span class="nf">find_neighbors</span><span class="p">(</span><span class="n">label</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">nx</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">ny</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">nz</span><span class="p">:</span> <span class="nb">int</span>
+                   <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">List</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Given a cube index, find the neighbor cube indices</span>
+
+<span class="sd">    Args:</span>
+<span class="sd">        label: (array) (n,) or (n x 3) indice array</span>
+<span class="sd">        nx: (int) number of cells in y direction</span>
+<span class="sd">        ny: (int) number of cells in y direction</span>
+<span class="sd">        nz: (int) number of cells in z direction</span>
+
+<span class="sd">    Returns: neighbor cell indices</span>
+
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="n">array</span> <span class="o">=</span> <span class="p">[[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]]</span> <span class="o">*</span> <span class="mi">3</span>
+    <span class="n">neighbor_vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">itertools</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="o">*</span><span class="n">array</span><span class="p">)),</span>
+                                <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">label</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+        <span class="n">label3d</span> <span class="o">=</span> <span class="n">_one_to_three</span><span class="p">(</span><span class="n">label</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="n">label3d</span> <span class="o">=</span> <span class="n">label</span>
+    <span class="n">all_labels</span> <span class="o">=</span> <span class="n">label3d</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">,</span> <span class="p">:]</span> <span class="o">-</span> <span class="n">neighbor_vectors</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:,</span> <span class="p">:]</span>
+    <span class="n">filtered_labels</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="c1"># filter out out-of-bound labels i.e., label &lt; 0</span>
+    <span class="k">for</span> <span class="n">labels</span> <span class="ow">in</span> <span class="n">all_labels</span><span class="p">:</span>
+        <span class="n">ind</span> <span class="o">=</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">nx</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">ny</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">nz</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">labels</span> <span class="o">&gt;</span> <span class="o">-</span><span class="mf">1e-5</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+        <span class="n">filtered_labels</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">labels</span><span class="p">[</span><span class="n">ind</span><span class="p">])</span>
+    <span class="k">return</span> <span class="n">filtered_labels</span></div>
 </pre></div>
 
           </div>
@@ -1444,7 +1683,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/libxcfunc.html b/docs/_modules/pymatgen/core/libxcfunc.html
index 03675f1ad9b..ab56e7beae7 100644
--- a/docs/_modules/pymatgen/core/libxcfunc.html
+++ b/docs/_modules/pymatgen/core/libxcfunc.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -600,7 +599,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/molecular_orbitals.html b/docs/_modules/pymatgen/core/molecular_orbitals.html
index 79273c60fee..c03f5a6bf86 100644
--- a/docs/_modules/pymatgen/core/molecular_orbitals.html
+++ b/docs/_modules/pymatgen/core/molecular_orbitals.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -158,12 +157,7 @@ <h1>Source code for pymatgen.core.molecular_orbitals</h1><div class="highlight">
             <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
                 <span class="n">lumo</span> <span class="o">=</span> <span class="kc">None</span>
 
-        <span class="k">if</span> <span class="n">homo</span> <span class="o">==</span> <span class="n">lumo</span><span class="p">:</span>
-            <span class="n">metal</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">metal</span> <span class="o">=</span> <span class="kc">False</span>
-
-        <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;HOMO&#39;</span><span class="p">:</span> <span class="n">homo</span><span class="p">,</span> <span class="s1">&#39;LUMO&#39;</span><span class="p">:</span> <span class="n">lumo</span><span class="p">,</span> <span class="s1">&#39;metal&#39;</span><span class="p">:</span> <span class="n">metal</span><span class="p">}</span></div></div>
+        <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;HOMO&#39;</span><span class="p">:</span> <span class="n">homo</span><span class="p">,</span> <span class="s1">&#39;LUMO&#39;</span><span class="p">:</span> <span class="n">lumo</span><span class="p">,</span> <span class="s1">&#39;metal&#39;</span><span class="p">:</span> <span class="n">homo</span> <span class="o">==</span> <span class="n">lumo</span><span class="p">}</span></div></div>
 </pre></div>
 
           </div>
@@ -202,7 +196,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/operations.html b/docs/_modules/pymatgen/core/operations.html
index c7f3b7ff01a..980e8be2790 100644
--- a/docs/_modules/pymatgen/core/operations.html
+++ b/docs/_modules/pymatgen/core/operations.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -53,12 +52,13 @@ <h1>Source code for pymatgen.core.operations</h1><div class="highlight"><pre>
 <span class="sd">This module provides classes that operate on points or vectors in 3D space.</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">from</span> <span class="nn">math</span> <span class="k">import</span> <span class="n">sin</span><span class="p">,</span> <span class="n">cos</span><span class="p">,</span> <span class="n">pi</span><span class="p">,</span> <span class="n">sqrt</span>
 <span class="kn">import</span> <span class="nn">string</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
 
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.electronic_structure.core</span> <span class="k">import</span> <span class="n">Magmom</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.string</span> <span class="k">import</span> <span class="n">transformation_to_string</span>
 
@@ -510,7 +510,7 @@ <h1>Source code for pymatgen.core.operations</h1><div class="highlight"><pre>
 <span class="sd">            tol (float): Tolerance for determining if matrices are equal.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">SymmOp</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">affine_transformation_matrix</span><span class="p">,</span> <span class="n">tol</span><span class="o">=</span><span class="n">tol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">time_reversal</span> <span class="o">!=</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">time_reversal</span> <span class="o">!=</span> <span class="o">-</span><span class="mi">1</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">time_reversal</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span>
                 <span class="s2">&quot;Time reversal operator not well defined: </span><span class="si">{0}</span><span class="s2">, </span><span class="si">{1}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">time_reversal</span><span class="p">,</span>
                                                                            <span class="nb">type</span><span class="p">(</span><span class="n">time_reversal</span><span class="p">)))</span>
@@ -674,7 +674,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/periodic_table.html b/docs/_modules/pymatgen/core/periodic_table.html
index cf8ee5a82de..a8e900e7f49 100644
--- a/docs/_modules/pymatgen/core/periodic_table.html
+++ b/docs/_modules/pymatgen/core/periodic_table.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -54,25 +53,20 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">json</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">io</span> <span class="k">import</span> <span class="nb">open</span>
 <span class="kn">from</span> <span class="nn">pathlib</span> <span class="k">import</span> <span class="n">Path</span>
 <span class="kn">from</span> <span class="nn">enum</span> <span class="k">import</span> <span class="n">Enum</span>
 <span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Callable</span>
+<span class="kn">from</span> <span class="nn">itertools</span> <span class="k">import</span> <span class="n">product</span><span class="p">,</span> \
+    <span class="n">combinations</span>
+<span class="kn">from</span> <span class="nn">collections</span> <span class="k">import</span> <span class="n">Counter</span>
+
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.core.units</span> <span class="k">import</span> <span class="n">Mass</span><span class="p">,</span> <span class="n">Length</span><span class="p">,</span> <span class="n">FloatWithUnit</span><span class="p">,</span> <span class="n">Unit</span><span class="p">,</span> \
     <span class="n">SUPPORTED_UNIT_NAMES</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.string</span> <span class="k">import</span> <span class="n">formula_double_format</span>
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
-<span class="kn">from</span> <span class="nn">itertools</span> <span class="k">import</span> <span class="n">product</span><span class="p">,</span> <span class="n">combinations</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="k">import</span> <span class="n">Counter</span>
-
-<span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong, Michael Kocher&quot;</span>
-<span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2011, The Materials Project&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;2.0&quot;</span>
-<span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
-<span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;shyuep@gmail.com&quot;</span>
-<span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Production&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;Sep 23, 2011&quot;</span>
 
 <span class="c1"># Loads element data from json file</span>
 <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span><span class="o">.</span><span class="n">absolute</span><span class="p">()</span><span class="o">.</span><span class="n">parent</span> <span class="o">/</span> <span class="s2">&quot;periodic_table.json&quot;</span><span class="p">),</span> <span class="s2">&quot;rt&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
@@ -470,12 +464,11 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="s2">&quot;X&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_data</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_data</span><span class="p">[</span><span class="s2">&quot;X&quot;</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;No electronegativity for </span><span class="si">%s</span><span class="s2">. Setting to NaN. &quot;</span>
-                          <span class="s2">&quot;This has no physical meaning, and is mainly done to &quot;</span>
-                          <span class="s2">&quot;avoid errors caused by the code expecting a float.&quot;</span>
-                          <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span><span class="p">)</span>
-            <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="s2">&quot;NaN&quot;</span><span class="p">)</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;No electronegativity for </span><span class="si">%s</span><span class="s2">. Setting to NaN. &quot;</span>
+                      <span class="s2">&quot;This has no physical meaning, and is mainly done to &quot;</span>
+                      <span class="s2">&quot;avoid errors caused by the code expecting a float.&quot;</span>
+                      <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span><span class="p">)</span>
+        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="s2">&quot;NaN&quot;</span><span class="p">)</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">atomic_radius</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -509,7 +502,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
             <span class="n">val</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_data</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kstr</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
             <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">val</span><span class="p">)</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;no data&quot;</span><span class="p">):</span>
                 <span class="n">val</span> <span class="o">=</span> <span class="kc">None</span>
-            <span class="k">elif</span> <span class="nb">type</span><span class="p">(</span><span class="n">val</span><span class="p">)</span> <span class="o">==</span> <span class="nb">dict</span><span class="p">:</span>
+            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
                 <span class="k">pass</span>
             <span class="k">else</span><span class="p">:</span>
                 <span class="k">try</span><span class="p">:</span>
@@ -602,8 +595,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="s2">&quot;Ionic radii&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_data</span><span class="p">:</span>
             <span class="k">return</span> <span class="p">{</span><span class="nb">int</span><span class="p">(</span><span class="n">k</span><span class="p">):</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="s2">&quot;ang&quot;</span><span class="p">)</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_data</span><span class="p">[</span><span class="s2">&quot;Ionic radii&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="p">{}</span>
+        <span class="k">return</span> <span class="p">{}</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">number</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -777,8 +769,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
         <span class="n">L</span><span class="p">,</span> <span class="n">v_e</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">valence</span>
         <span class="k">if</span> <span class="n">v_e</span> <span class="o">&lt;=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">L</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
             <span class="k">return</span> <span class="n">J_sorted_terms</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">J_sorted_terms</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="k">return</span> <span class="n">J_sorted_terms</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
 
     <span class="k">def</span> <span class="nf">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">return</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Element</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">Z</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">Z</span>
@@ -805,10 +796,10 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
         <span class="n">x2</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="s2">&quot;inf&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span> <span class="k">else</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span>
         <span class="k">if</span> <span class="n">x1</span> <span class="o">!=</span> <span class="n">x2</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">x1</span> <span class="o">&lt;</span> <span class="n">x2</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># There are cases where the electronegativity are exactly equal.</span>
-            <span class="c1"># We then sort by symbol.</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">&lt;</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span>
+
+        <span class="c1"># There are cases where the electronegativity are exactly equal.</span>
+        <span class="c1"># We then sort by symbol.</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">&lt;</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span>
 
 <div class="viewcode-block" id="Element.from_Z"><a class="viewcode-back" href="../../../pymatgen.core.periodic_table.html#pymatgen.core.periodic_table.Element.from_Z">[docs]</a>    <span class="nd">@staticmethod</span>
     <span class="k">def</span> <span class="nf">from_Z</span><span class="p">(</span><span class="n">z</span><span class="p">:</span> <span class="nb">int</span><span class="p">):</span>
@@ -856,11 +847,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">            True if symbol is a valid element (e.g., &quot;H&quot;). False otherwise</span>
 <span class="sd">            (e.g., &quot;Zebra&quot;).</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">Element</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span>
-            <span class="k">return</span> <span class="kc">True</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">False</span></div>
+        <span class="k">return</span> <span class="n">symbol</span> <span class="ow">in</span> <span class="n">Element</span><span class="o">.</span><span class="n">__members__</span></div>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">row</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -871,11 +858,10 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
         <span class="n">total</span> <span class="o">=</span> <span class="mi">0</span>
         <span class="k">if</span> <span class="mi">57</span> <span class="o">&lt;=</span> <span class="n">z</span> <span class="o">&lt;=</span> <span class="mi">71</span><span class="p">:</span>
             <span class="k">return</span> <span class="mi">8</span>
-        <span class="k">elif</span> <span class="mi">89</span> <span class="o">&lt;=</span> <span class="n">z</span> <span class="o">&lt;=</span> <span class="mi">103</span><span class="p">:</span>
+        <span class="k">if</span> <span class="mi">89</span> <span class="o">&lt;=</span> <span class="n">z</span> <span class="o">&lt;=</span> <span class="mi">103</span><span class="p">:</span>
             <span class="k">return</span> <span class="mi">9</span>
-
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">_pt_row_sizes</span><span class="p">)):</span>
-            <span class="n">total</span> <span class="o">+=</span> <span class="n">_pt_row_sizes</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">size</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">_pt_row_sizes</span><span class="p">):</span>
+            <span class="n">total</span> <span class="o">+=</span> <span class="n">size</span>
             <span class="k">if</span> <span class="n">total</span> <span class="o">&gt;=</span> <span class="n">z</span><span class="p">:</span>
                 <span class="k">return</span> <span class="n">i</span> <span class="o">+</span> <span class="mi">1</span>
         <span class="k">return</span> <span class="mi">8</span>
@@ -893,23 +879,20 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
         <span class="k">if</span> <span class="mi">3</span> <span class="o">&lt;=</span> <span class="n">z</span> <span class="o">&lt;=</span> <span class="mi">18</span><span class="p">:</span>
             <span class="k">if</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
                 <span class="k">return</span> <span class="mi">18</span>
-            <span class="k">elif</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span> <span class="o">&lt;=</span> <span class="mi">2</span><span class="p">:</span>
+            <span class="k">if</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span> <span class="o">&lt;=</span> <span class="mi">2</span><span class="p">:</span>
                 <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="mi">10</span> <span class="o">+</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span>
+            <span class="k">return</span> <span class="mi">10</span> <span class="o">+</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)</span> <span class="o">%</span> <span class="mi">8</span>
 
         <span class="k">if</span> <span class="mi">19</span> <span class="o">&lt;=</span> <span class="n">z</span> <span class="o">&lt;=</span> <span class="mi">54</span><span class="p">:</span>
             <span class="k">if</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">18</span><span class="p">)</span> <span class="o">%</span> <span class="mi">18</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
                 <span class="k">return</span> <span class="mi">18</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">18</span><span class="p">)</span> <span class="o">%</span> <span class="mi">18</span>
+            <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">18</span><span class="p">)</span> <span class="o">%</span> <span class="mi">18</span>
 
         <span class="k">if</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
             <span class="k">return</span> <span class="mi">18</span>
-        <span class="k">elif</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span> <span class="o">&gt;=</span> <span class="mi">18</span><span class="p">:</span>
+        <span class="k">if</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span> <span class="o">&gt;=</span> <span class="mi">18</span><span class="p">:</span>
             <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span> <span class="o">-</span> <span class="mi">14</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span>
+        <span class="k">return</span> <span class="p">(</span><span class="n">z</span> <span class="o">-</span> <span class="mi">54</span><span class="p">)</span> <span class="o">%</span> <span class="mi">32</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">block</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -918,13 +901,13 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">is_actinoid</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_lanthanoid</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">Z</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">71</span><span class="p">,</span> <span class="mi">103</span><span class="p">]:</span>
             <span class="k">return</span> <span class="s2">&quot;f&quot;</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_actinoid</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_lanthanoid</span><span class="p">:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_actinoid</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_lanthanoid</span><span class="p">:</span>
             <span class="k">return</span> <span class="s2">&quot;d&quot;</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">]:</span>
             <span class="k">return</span> <span class="s2">&quot;s&quot;</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">13</span><span class="p">,</span> <span class="mi">19</span><span class="p">):</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">13</span><span class="p">,</span> <span class="mi">19</span><span class="p">):</span>
             <span class="k">return</span> <span class="s2">&quot;p&quot;</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">13</span><span class="p">):</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">group</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">13</span><span class="p">):</span>
             <span class="k">return</span> <span class="s2">&quot;d&quot;</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;unable to determine block&quot;</span><span class="p">)</span>
 
@@ -1173,19 +1156,18 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
         <span class="n">x2</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="s2">&quot;inf&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span> <span class="k">else</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span>
         <span class="k">if</span> <span class="n">x1</span> <span class="o">!=</span> <span class="n">x2</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">x1</span> <span class="o">&lt;</span> <span class="n">x2</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span><span class="p">:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span><span class="p">:</span>
             <span class="c1"># There are cases where the electronegativity are exactly equal.</span>
             <span class="c1"># We then sort by symbol.</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">&lt;</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span><span class="p">:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span><span class="p">:</span>
             <span class="n">other_oxi</span> <span class="o">=</span> <span class="mi">0</span> <span class="k">if</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Element</span><span class="p">)</span>
                               <span class="ow">or</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span> <span class="o">&lt;</span> <span class="n">other_oxi</span>
-        <span class="k">elif</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;spin&quot;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s2">&quot;spin&quot;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
             <span class="n">other_spin</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s2">&quot;spin&quot;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">spin</span> <span class="o">&lt;</span> <span class="n">other_spin</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">False</span>
+        <span class="k">return</span> <span class="kc">False</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">element</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -1208,7 +1190,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
             <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;No default ionic radius for </span><span class="si">%s</span><span class="s2">. Using hs data.&quot;</span> <span class="o">%</span>
                           <span class="bp">self</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;Ionic radii hs&quot;</span><span class="p">][</span><span class="n">oxstr</span><span class="p">]</span>
-        <span class="k">elif</span> <span class="n">oxstr</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;Ionic radii ls&quot;</span><span class="p">,</span> <span class="p">{}):</span>
+        <span class="k">if</span> <span class="n">oxstr</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;Ionic radii ls&quot;</span><span class="p">,</span> <span class="p">{}):</span>
             <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;No default ionic radius for </span><span class="si">%s</span><span class="s2">. Using ls data.&quot;</span> <span class="o">%</span>
                           <span class="bp">self</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;Ionic radii ls&quot;</span><span class="p">][</span><span class="n">oxstr</span><span class="p">]</span>
@@ -1247,8 +1229,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
                 <span class="n">toks</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;,&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;=&quot;</span><span class="p">)</span>
                 <span class="n">properties</span> <span class="o">=</span> <span class="p">{</span><span class="n">toks</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="nb">float</span><span class="p">(</span><span class="n">toks</span><span class="p">[</span><span class="mi">1</span><span class="p">])}</span>
             <span class="k">return</span> <span class="n">Specie</span><span class="p">(</span><span class="n">sym</span><span class="p">,</span> <span class="n">oxi</span><span class="p">,</span> <span class="n">properties</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid Species String&quot;</span><span class="p">)</span></div>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid Species String&quot;</span><span class="p">)</span></div>
 
     <span class="k">def</span> <span class="nf">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="s2">&quot;Specie &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span>
@@ -1276,18 +1257,18 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 
         <span class="n">quad_mom</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_el</span><span class="o">.</span><span class="n">nmr_quadrupole_moment</span>
 
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">quad_mom</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">quad_mom</span><span class="p">:</span>
             <span class="k">return</span> <span class="mf">0.0</span>
 
         <span class="k">if</span> <span class="n">isotope</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">isotopes</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">quad_mom</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
             <span class="n">isotopes</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;-&quot;</span><span class="p">)[</span><span class="mi">1</span><span class="p">]),</span> <span class="n">reverse</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">quad_mom</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">isotopes</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mf">0.0</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">isotope</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">quad_mom</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No quadrupole moment for isotope </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
-                    <span class="n">isotope</span><span class="p">))</span>
-            <span class="k">return</span> <span class="n">quad_mom</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">isotope</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">)</span></div>
+
+        <span class="k">if</span> <span class="n">isotope</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">quad_mom</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;No quadrupole moment for isotope </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+                <span class="n">isotope</span><span class="p">))</span>
+        <span class="k">return</span> <span class="n">quad_mom</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">isotope</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="Specie.get_shannon_radius"><a class="viewcode-back" href="../../../pymatgen.core.periodic_table.html#pymatgen.core.periodic_table.Specie.get_shannon_radius">[docs]</a>    <span class="k">def</span> <span class="nf">get_shannon_radius</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cn</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">spin</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span><span class="p">,</span>
                            <span class="n">radius_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;ionic&quot;</span><span class="p">):</span>
@@ -1339,8 +1320,7 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">            an invalid oxidation state.</span>
 <span class="sd">            ValueError if invalid coordination or spin_config.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">coordination</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;oct&quot;</span><span class="p">,</span> <span class="s2">&quot;tet&quot;</span><span class="p">)</span> <span class="ow">or</span> \
-                <span class="n">spin_config</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;high&quot;</span><span class="p">,</span> <span class="s2">&quot;low&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">coordination</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;oct&quot;</span><span class="p">,</span> <span class="s2">&quot;tet&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">spin_config</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;high&quot;</span><span class="p">,</span> <span class="s2">&quot;low&quot;</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid coordination or spin config.&quot;</span><span class="p">)</span>
         <span class="n">elec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">full_electronic_structure</span>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">elec</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span> <span class="ow">or</span> <span class="n">elec</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">&quot;s&quot;</span> <span class="ow">or</span> <span class="n">elec</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">&quot;d&quot;</span><span class="p">:</span>
@@ -1351,26 +1331,27 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
             <span class="k">raise</span> <span class="ne">AttributeError</span><span class="p">(</span>
                 <span class="s2">&quot;Invalid oxidation state </span><span class="si">{}</span><span class="s2"> for element </span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span><span class="p">))</span>
         <span class="k">if</span> <span class="n">spin_config</span> <span class="o">==</span> <span class="s2">&quot;high&quot;</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">nelectrons</span> <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">5</span> <span class="k">else</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span>
-        <span class="k">elif</span> <span class="n">spin_config</span> <span class="o">==</span> <span class="s2">&quot;low&quot;</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">5</span><span class="p">:</span>
+                <span class="k">return</span> <span class="n">nelectrons</span>
+            <span class="k">return</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span>
+        <span class="k">if</span> <span class="n">spin_config</span> <span class="o">==</span> <span class="s2">&quot;low&quot;</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">coordination</span> <span class="o">==</span> <span class="s2">&quot;oct&quot;</span><span class="p">:</span>
                 <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">3</span><span class="p">:</span>
                     <span class="k">return</span> <span class="n">nelectrons</span>
-                <span class="k">elif</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">6</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">6</span><span class="p">:</span>
                     <span class="k">return</span> <span class="mi">6</span> <span class="o">-</span> <span class="n">nelectrons</span>
-                <span class="k">elif</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">8</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">8</span><span class="p">:</span>
                     <span class="k">return</span> <span class="n">nelectrons</span> <span class="o">-</span> <span class="mi">6</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">return</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span>
-            <span class="k">elif</span> <span class="n">coordination</span> <span class="o">==</span> <span class="s2">&quot;tet&quot;</span><span class="p">:</span>
+                <span class="k">return</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span>
+            <span class="k">if</span> <span class="n">coordination</span> <span class="o">==</span> <span class="s2">&quot;tet&quot;</span><span class="p">:</span>
                 <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">2</span><span class="p">:</span>
                     <span class="k">return</span> <span class="n">nelectrons</span>
-                <span class="k">elif</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
                     <span class="k">return</span> <span class="mi">4</span> <span class="o">-</span> <span class="n">nelectrons</span>
-                <span class="k">elif</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">7</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">nelectrons</span> <span class="o">&lt;=</span> <span class="mi">7</span><span class="p">:</span>
                     <span class="k">return</span> <span class="n">nelectrons</span> <span class="o">-</span> <span class="mi">4</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">return</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span></div>
+                <span class="k">return</span> <span class="mi">10</span> <span class="o">-</span> <span class="n">nelectrons</span>
+        <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">()</span></div>
 
     <span class="k">def</span> <span class="nf">__deepcopy__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">memo</span><span class="p">):</span>
         <span class="k">return</span> <span class="n">Specie</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">symbol</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_properties</span><span class="p">)</span>
@@ -1467,8 +1448,10 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">DummySpecie</span><span class="p">):</span>
             <span class="k">return</span> <span class="kc">False</span>
-        <span class="k">return</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Specie</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span>
-                <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_properties</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">_properties</span><span class="p">)</span>
+        <span class="k">return</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Specie</span><span class="p">)</span> <span class="ow">and</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span> <span class="ow">and</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span> <span class="ow">and</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">_properties</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">_properties</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__ne__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">return</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__eq__</span><span class="p">(</span><span class="n">other</span><span class="p">)</span>
@@ -1480,13 +1463,12 @@ <h1>Source code for pymatgen.core.periodic_table</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">X</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">X</span> <span class="o">&lt;</span> <span class="n">other</span><span class="o">.</span><span class="n">X</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span><span class="p">:</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">!=</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span><span class="p">:</span>
             <span class="c1"># There are cases where the electronegativity are exactly equal.</span>
             <span class="c1"># We then sort by symbol.</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">symbol</span> <span class="o">&lt;</span> <span class="n">other</span><span class="o">.</span><span class="n">symbol</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">other_oxi</span> <span class="o">=</span> <span class="mi">0</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Element</span><span class="p">)</span> <span class="k">else</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span> <span class="o">&lt;</span> <span class="n">other_oxi</span>
+        <span class="n">other_oxi</span> <span class="o">=</span> <span class="mi">0</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Element</span><span class="p">)</span> <span class="k">else</span> <span class="n">other</span><span class="o">.</span><span class="n">oxi_state</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">oxi_state</span> <span class="o">&lt;</span> <span class="n">other_oxi</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">Z</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
@@ -1675,7 +1657,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/sites.html b/docs/_modules/pymatgen/core/sites.html
index 164d1798f6c..d16bcb3b940 100644
--- a/docs/_modules/pymatgen/core/sites.html
+++ b/docs/_modules/pymatgen/core/sites.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -56,13 +55,15 @@ <h1>Source code for pymatgen.core.sites</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">collections</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
+<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+<span class="kn">from</span> <span class="nn">monty.dev</span> <span class="k">import</span> <span class="n">deprecated</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.periodic_table</span> <span class="k">import</span> <span class="n">Element</span><span class="p">,</span> <span class="n">Specie</span><span class="p">,</span> <span class="n">DummySpecie</span><span class="p">,</span> \
     <span class="n">get_el_sp</span>
-<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.coord</span> <span class="k">import</span> <span class="n">pbc_diff</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.composition</span> <span class="k">import</span> <span class="n">Composition</span>
-<span class="kn">from</span> <span class="nn">monty.dev</span> <span class="k">import</span> <span class="n">deprecated</span>
+
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2012, The Materials Project&quot;</span>
@@ -206,10 +207,9 @@ <h1>Source code for pymatgen.core.sites</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_ordered</span><span class="p">:</span>
             <span class="k">return</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">sorted_species</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-            <span class="k">return</span> <span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s2">&quot;</span><span class="si">{}</span><span class="s2">:</span><span class="si">{:.3f}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sp</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">[</span><span class="n">sp</span><span class="p">])</span>
-                              <span class="k">for</span> <span class="n">sp</span> <span class="ow">in</span> <span class="n">sorted_species</span><span class="p">])</span>
+        <span class="n">sorted_species</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+        <span class="k">return</span> <span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s2">&quot;</span><span class="si">{}</span><span class="s2">:</span><span class="si">{:.3f}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sp</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">[</span><span class="n">sp</span><span class="p">])</span>
+                          <span class="k">for</span> <span class="n">sp</span> <span class="ow">in</span> <span class="n">sorted_species</span><span class="p">])</span>
 
     <span class="nd">@property</span>  <span class="c1"># type: ignore</span>
     <span class="nd">@deprecated</span><span class="p">(</span><span class="n">message</span><span class="o">=</span><span class="s2">&quot;Use site.species instead. This will be deprecated with effect from pymatgen 2020.&quot;</span><span class="p">)</span>
@@ -529,9 +529,9 @@ <h1>Source code for pymatgen.core.sites</h1><div class="highlight"><pre>
         <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">in_place</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span> <span class="o">=</span> <span class="n">frac_coords</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">PeriodicSite</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">,</span>
-                                <span class="n">properties</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">properties</span><span class="p">)</span></div>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="k">return</span> <span class="n">PeriodicSite</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">,</span>
+                            <span class="n">properties</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">properties</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="PeriodicSite.is_periodic_image"><a class="viewcode-back" href="../../../pymatgen.core.sites.html#pymatgen.core.sites.PeriodicSite.is_periodic_image">[docs]</a>    <span class="k">def</span> <span class="nf">is_periodic_image</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">,</span> <span class="n">tolerance</span><span class="o">=</span><span class="mf">1e-8</span><span class="p">,</span> <span class="n">check_lattice</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -727,7 +727,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/spectrum.html b/docs/_modules/pymatgen/core/spectrum.html
index 76101922b73..a0161d6d3dd 100644
--- a/docs/_modules/pymatgen/core/spectrum.html
+++ b/docs/_modules/pymatgen/core/spectrum.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -54,10 +53,11 @@ <h1>Source code for pymatgen.core.spectrum</h1><div class="highlight"><pre>
 <span class="sd">x y value pairs.</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
-<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">scipy.ndimage.filters</span> <span class="k">import</span> <span class="n">gaussian_filter1d</span>
 
+<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.util.coord</span> <span class="k">import</span> <span class="n">get_linear_interpolated_value</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Chen Zheng&quot;</span>
@@ -106,10 +106,9 @@ <h1>Source code for pymatgen.core.spectrum</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">__getattr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">item</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">XLABEL</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">x</span>
-        <span class="k">elif</span> <span class="n">item</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">YLABEL</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
+        <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">YLABEL</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">y</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">AttributeError</span><span class="p">(</span><span class="s2">&quot;Invalid attribute name </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
+        <span class="k">raise</span> <span class="ne">AttributeError</span><span class="p">(</span><span class="s2">&quot;Invalid attribute name </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
 
     <span class="k">def</span> <span class="nf">__len__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">ydim</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
@@ -161,9 +160,8 @@ <h1>Source code for pymatgen.core.spectrum</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ydim</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">get_linear_interpolated_value</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="p">[</span><span class="n">get_linear_interpolated_value</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">y</span><span class="p">[:,</span> <span class="n">k</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ydim</span><span class="p">[</span><span class="mi">1</span><span class="p">])]</span></div>
+        <span class="k">return</span> <span class="p">[</span><span class="n">get_linear_interpolated_value</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">y</span><span class="p">[:,</span> <span class="n">k</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
+                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ydim</span><span class="p">[</span><span class="mi">1</span><span class="p">])]</span></div>
 
 <div class="viewcode-block" id="Spectrum.copy"><a class="viewcode-back" href="../../../pymatgen.core.spectrum.html#pymatgen.core.spectrum.Spectrum.copy">[docs]</a>    <span class="k">def</span> <span class="nf">copy</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -296,7 +294,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/structure.html b/docs/_modules/pymatgen/core/structure.html
index ebd150a4eb4..03196f31714 100644
--- a/docs/_modules/pymatgen/core/structure.html
+++ b/docs/_modules/pymatgen/core/structure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -67,15 +66,15 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">functools</span>
 <span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">List</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Union</span><span class="p">,</span> <span class="n">Iterator</span><span class="p">,</span> <span class="n">Set</span><span class="p">,</span> <span class="n">Sequence</span><span class="p">,</span> <span class="n">Iterable</span>
 
-<span class="kn">from</span> <span class="nn">math</span> <span class="k">import</span> <span class="n">gcd</span>
-
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
 <span class="kn">from</span> <span class="nn">monty.dev</span> <span class="k">import</span> <span class="n">deprecated</span>
+<span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
+<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.core.operations</span> <span class="k">import</span> <span class="n">SymmOp</span>
-<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
+<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span><span class="p">,</span> <span class="n">get_points_in_spheres</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.periodic_table</span> <span class="k">import</span> <span class="n">Element</span><span class="p">,</span> <span class="n">Specie</span><span class="p">,</span> <span class="n">get_el_sp</span><span class="p">,</span> <span class="n">DummySpecie</span>
-<span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.sites</span> <span class="k">import</span> <span class="n">Site</span><span class="p">,</span> <span class="n">PeriodicSite</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.bonds</span> <span class="k">import</span> <span class="n">CovalentBond</span><span class="p">,</span> <span class="n">get_bond_length</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.composition</span> <span class="k">import</span> <span class="n">Composition</span>
@@ -83,7 +82,6 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
     <span class="n">lattice_points_in_supercell</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.units</span> <span class="k">import</span> <span class="n">Mass</span><span class="p">,</span> <span class="n">Length</span>
 
-<span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2011, The Materials Project&quot;</span>
@@ -113,7 +111,6 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Returns a tuple of sites.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span>
 
 <div class="viewcode-block" id="SiteCollection.get_distance"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.get_distance">[docs]</a>    <span class="nd">@abstractmethod</span>
     <span class="k">def</span> <span class="nf">get_distance</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">j</span><span class="p">:</span> <span class="nb">int</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">float</span><span class="p">:</span>
@@ -126,8 +123,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 
 <span class="sd">        Returns:</span>
 <span class="sd">            Distance between sites at index i and index j.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span></div>
+<span class="sd">        &quot;&quot;&quot;</span></div>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">distance_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
@@ -347,24 +343,21 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Generates well-known string representations of SiteCollections (e.g.,</span>
 <span class="sd">        molecules / structures). Should return a string type or write to a file.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span></div>
+<span class="sd">        &quot;&quot;&quot;</span></div>
 
 <div class="viewcode-block" id="SiteCollection.from_str"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.from_str">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="nd">@abstractmethod</span>
     <span class="k">def</span> <span class="nf">from_str</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_string</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">fmt</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Reads in SiteCollection from a string.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span></div>
+<span class="sd">        &quot;&quot;&quot;</span></div>
 
 <div class="viewcode-block" id="SiteCollection.from_file"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.from_file">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="nd">@abstractmethod</span>
     <span class="k">def</span> <span class="nf">from_file</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">filename</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Reads in SiteCollection from a filename.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span></div>
+<span class="sd">        &quot;&quot;&quot;</span></div>
 
 <div class="viewcode-block" id="SiteCollection.add_site_property"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.add_site_property">[docs]</a>    <span class="k">def</span> <span class="nf">add_site_property</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">property_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">values</span><span class="p">:</span> <span class="n">List</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -482,7 +475,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 <span class="sd">            **kwargs: parameters to pass into oxi_state_guesses()</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">oxid_guess</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">composition</span><span class="o">.</span><span class="n">oxi_state_guesses</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="n">oxid_guess</span> <span class="o">=</span> <span class="n">oxid_guess</span> <span class="ow">or</span> <span class="p">[</span><span class="nb">dict</span><span class="p">([(</span><span class="n">e</span><span class="o">.</span><span class="n">symbol</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">composition</span><span class="p">])]</span>
+        <span class="n">oxid_guess</span> <span class="o">=</span> <span class="n">oxid_guess</span> <span class="ow">or</span> <span class="p">[{</span><span class="n">e</span><span class="o">.</span><span class="n">symbol</span><span class="p">:</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">composition</span><span class="p">}]</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">add_oxidation_state_by_element</span><span class="p">(</span><span class="n">oxid_guess</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span></div>
 
 <div class="viewcode-block" id="SiteCollection.add_spin_by_element"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.add_spin_by_element">[docs]</a>    <span class="k">def</span> <span class="nf">add_spin_by_element</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spins</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">float</span><span class="p">]):</span>
@@ -628,14 +621,14 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span><span class="n">lattice</span><span class="p">)</span>
 
         <span class="n">sites</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">species</span><span class="p">)):</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sp</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">species</span><span class="p">):</span>
             <span class="n">prop</span> <span class="o">=</span> <span class="kc">None</span>
             <span class="k">if</span> <span class="n">site_properties</span><span class="p">:</span>
                 <span class="n">prop</span> <span class="o">=</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
                         <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">site_properties</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
 
             <span class="n">sites</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
-                <span class="n">PeriodicSite</span><span class="p">(</span><span class="n">species</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">coords</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span><span class="p">,</span>
+                <span class="n">PeriodicSite</span><span class="p">(</span><span class="n">sp</span><span class="p">,</span> <span class="n">coords</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span><span class="p">,</span>
                              <span class="n">to_unit_cell</span><span class="p">,</span>
                              <span class="n">coords_are_cartesian</span><span class="o">=</span><span class="n">coords_are_cartesian</span><span class="p">,</span>
                              <span class="n">properties</span><span class="o">=</span><span class="n">prop</span><span class="p">))</span>
@@ -754,8 +747,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">sgp</span><span class="o">.</span><span class="n">is_compatible</span><span class="p">(</span><span class="n">latt</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
                 <span class="s2">&quot;Supplied lattice with parameters </span><span class="si">%s</span><span class="s2"> is incompatible with &quot;</span>
-                <span class="s2">&quot;supplied spacegroup </span><span class="si">%s</span><span class="s2">!&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">latt</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">,</span>
-                                             <span class="n">sgp</span><span class="o">.</span><span class="n">symbol</span><span class="p">)</span>
+                <span class="s2">&quot;supplied spacegroup </span><span class="si">%s</span><span class="s2">!&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">latt</span><span class="o">.</span><span class="n">parameters</span><span class="p">,</span> <span class="n">sgp</span><span class="o">.</span><span class="n">symbol</span><span class="p">)</span>
             <span class="p">)</span>
 
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">species</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">coords</span><span class="p">):</span>
@@ -764,8 +756,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
                 <span class="s2">&quot;different!&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">species</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">coords</span><span class="p">))</span>
             <span class="p">)</span>
 
-        <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">coords</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">)</span> \
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">coords_are_cartesian</span> <span class="k">else</span> \
+        <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">coords</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="n">coords_are_cartesian</span> <span class="k">else</span> \
             <span class="n">latt</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">coords</span><span class="p">)</span>
 
         <span class="n">props</span> <span class="o">=</span> <span class="p">{}</span> <span class="k">if</span> <span class="n">site_properties</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">site_properties</span>
@@ -842,8 +833,8 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="s1">&#39;magmom&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">site_properties</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Magnetic moments have to be defined.&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">magmoms</span> <span class="o">=</span> <span class="p">[</span><span class="n">Magmom</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="k">for</span> <span class="n">m</span> <span class="ow">in</span> <span class="n">site_properties</span><span class="p">[</span><span class="s1">&#39;magmom&#39;</span><span class="p">]]</span>
+
+        <span class="n">magmoms</span> <span class="o">=</span> <span class="p">[</span><span class="n">Magmom</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="k">for</span> <span class="n">m</span> <span class="ow">in</span> <span class="n">site_properties</span><span class="p">[</span><span class="s1">&#39;magmom&#39;</span><span class="p">]]</span>
 
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">msg</span><span class="p">,</span> <span class="n">MagneticSpaceGroup</span><span class="p">):</span>
             <span class="n">msg</span> <span class="o">=</span> <span class="n">MagneticSpaceGroup</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>  <span class="c1"># type: ignore</span>
@@ -856,8 +847,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">msg</span><span class="o">.</span><span class="n">is_compatible</span><span class="p">(</span><span class="n">latt</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
                 <span class="s2">&quot;Supplied lattice with parameters </span><span class="si">%s</span><span class="s2"> is incompatible with &quot;</span>
-                <span class="s2">&quot;supplied spacegroup </span><span class="si">%s</span><span class="s2">!&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">latt</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">,</span>
-                                             <span class="n">msg</span><span class="o">.</span><span class="n">sg_symbol</span><span class="p">)</span>
+                <span class="s2">&quot;supplied spacegroup </span><span class="si">%s</span><span class="s2">!&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">latt</span><span class="o">.</span><span class="n">parameters</span><span class="p">,</span> <span class="n">msg</span><span class="o">.</span><span class="n">sg_symbol</span><span class="p">)</span>
             <span class="p">)</span>
 
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">species</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">coords</span><span class="p">):</span>
@@ -899,8 +889,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_charge</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">charge</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_charge</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_charge</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">distance_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -970,8 +959,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="n">m</span> <span class="o">=</span> <span class="n">StructureMatcher</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">anonymous</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">fit_anonymous</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">)</span></div>
+        <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">fit_anonymous</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">)</span></div>
 
     <span class="k">def</span> <span class="nf">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">other</span> <span class="ow">is</span> <span class="bp">self</span><span class="p">:</span>
@@ -1219,82 +1207,25 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 <span class="sd">            (site, distance, index, image).</span>
 <span class="sd">        &quot;&quot;&quot;</span>
 
-        <span class="n">latt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span>
         <span class="k">if</span> <span class="n">sites</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sites</span>
         <span class="n">site_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">site</span><span class="o">.</span><span class="n">coords</span> <span class="k">for</span> <span class="n">site</span> <span class="ow">in</span> <span class="n">sites</span><span class="p">])</span>
-        <span class="n">recp_len</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">latt</span><span class="o">.</span><span class="n">reciprocal_lattice</span><span class="o">.</span><span class="n">abc</span><span class="p">)</span>
-        <span class="n">maxr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ceil</span><span class="p">((</span><span class="n">r</span> <span class="o">+</span> <span class="mf">0.15</span><span class="p">)</span> <span class="o">*</span> <span class="n">recp_len</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span><span class="p">))</span>
-        <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">site_coords</span><span class="p">)</span>
-        <span class="n">nmin</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">frac_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span> <span class="o">-</span> <span class="n">maxr</span>
-        <span class="n">nmax</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">frac_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span> <span class="o">+</span> <span class="n">maxr</span>
-        <span class="n">all_ranges</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nmin</span><span class="p">,</span> <span class="n">nmax</span><span class="p">)]</span>
-        <span class="n">matrix</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">matrix</span>
-        <span class="n">all_fcoords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">coords_in_cell</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">all_fcoords</span><span class="p">,</span> <span class="n">matrix</span><span class="p">)</span>
-        <span class="n">coords_min</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">site_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-        <span class="n">coords_max</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">site_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-        <span class="c1"># The lower bound of all considered atom coords</span>
-        <span class="n">global_min</span> <span class="o">=</span> <span class="n">coords_min</span> <span class="o">-</span> <span class="n">r</span> <span class="o">-</span> <span class="n">numerical_tol</span>
-        <span class="n">global_max</span> <span class="o">=</span> <span class="n">coords_max</span> <span class="o">+</span> <span class="n">r</span> <span class="o">+</span> <span class="n">numerical_tol</span>
-
-        <span class="c1"># Filter out those beyond max range</span>
-        <span class="n">valid_coords</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">valid_images</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">valid_indices</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">image</span> <span class="ow">in</span> <span class="n">itertools</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="o">*</span><span class="n">all_ranges</span><span class="p">):</span>
-            <span class="n">coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">image</span><span class="p">,</span> <span class="n">matrix</span><span class="p">)</span> <span class="o">+</span> <span class="n">coords_in_cell</span>
-            <span class="n">valid_index_bool</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">bitwise_and</span><span class="p">(</span><span class="n">coords</span> <span class="o">&gt;</span> <span class="n">global_min</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:],</span> <span class="n">coords</span> <span class="o">&lt;</span> <span class="n">global_max</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:]),</span>
-                                      <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">ind</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">valid_index_bool</span><span class="p">):</span>
-                <span class="n">valid_coords</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">coords</span><span class="p">[</span><span class="n">valid_index_bool</span><span class="p">])</span>
-                <span class="n">valid_images</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="n">image</span><span class="p">)]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">valid_index_bool</span><span class="p">))</span>
-                <span class="n">valid_indices</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ind</span> <span class="k">if</span> <span class="n">valid_index_bool</span><span class="p">[</span><span class="n">k</span><span class="p">]])</span>
-        <span class="n">valid_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-        <span class="c1"># Divide the valid 3D space into cubes and compute the cube ids</span>
-        <span class="n">all_cube_index</span> <span class="o">=</span> <span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">valid_coords</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">)</span>
-        <span class="n">nx</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span> <span class="o">=</span> <span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">global_max</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
-        <span class="n">all_cube_index</span> <span class="o">=</span> <span class="n">_three_to_one</span><span class="p">(</span><span class="n">all_cube_index</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
-        <span class="n">site_cube_index</span> <span class="o">=</span> <span class="n">_three_to_one</span><span class="p">(</span><span class="n">_compute_cube_index</span><span class="p">(</span><span class="n">site_coords</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">r</span><span class="p">),</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
-        <span class="c1"># create cube index to coordinates, images, and indices map</span>
-        <span class="n">cube_to_coords</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
-        <span class="n">cube_to_images</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
-        <span class="n">cube_to_indices</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>  <span class="c1"># type: Dict[int, List]</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">l</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">all_cube_index</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">valid_coords</span><span class="p">,</span>
-                              <span class="n">valid_images</span><span class="p">,</span> <span class="n">valid_indices</span><span class="p">):</span>
-            <span class="n">cube_to_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">j</span><span class="p">)</span>
-            <span class="n">cube_to_images</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span><span class="p">)</span>
-            <span class="n">cube_to_indices</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">l</span><span class="p">)</span>
-
-        <span class="c1"># find all neighboring cubes for each atom in the lattice cell</span>
-        <span class="n">site_neighbors</span> <span class="o">=</span> <span class="n">find_neighbors</span><span class="p">(</span><span class="n">site_cube_index</span><span class="p">,</span> <span class="n">nx</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
-        <span class="n">neighbors</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># type: List[List[Neighbor]]</span>
-        <span class="k">for</span> <span class="n">sp</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">species_and_occu</span><span class="p">,</span> <span class="n">site_coords</span><span class="p">,</span> <span class="n">site_neighbors</span><span class="p">,</span> <span class="n">sites</span><span class="p">):</span>
-            <span class="n">l1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">_three_to_one</span><span class="p">(</span><span class="n">j</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
-            <span class="c1"># use the cube index map to find the all the neighboring</span>
-            <span class="c1"># coords, images, and indices</span>
-            <span class="n">ks</span> <span class="o">=</span> <span class="p">[</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">l1</span> <span class="k">if</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">cube_to_coords</span><span class="p">]</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">ks</span><span class="p">:</span>
+        <span class="n">point_neighbors</span> <span class="o">=</span> <span class="n">get_points_in_spheres</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cart_coords</span><span class="p">,</span> <span class="n">site_coords</span><span class="p">,</span> <span class="n">r</span><span class="o">=</span><span class="n">r</span><span class="p">,</span> <span class="n">pbc</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                                                <span class="n">numerical_tol</span><span class="o">=</span><span class="n">numerical_tol</span><span class="p">,</span> <span class="n">lattice</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">)</span>
+        <span class="n">neighbors</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="n">Neighbor</span><span class="p">]]</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">point_neighbor</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">point_neighbors</span><span class="p">,</span> <span class="n">sites</span><span class="p">):</span>
+            <span class="n">nns</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="n">Neighbor</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">point_neighbor</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
                 <span class="n">neighbors</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
                 <span class="k">continue</span>
-            <span class="n">nn_coords</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">cube_to_coords</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="n">nn_images</span> <span class="o">=</span> <span class="n">itertools</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="o">*</span><span class="p">[</span><span class="n">cube_to_images</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">])</span>
-            <span class="n">nn_indices</span> <span class="o">=</span> <span class="n">itertools</span><span class="o">.</span><span class="n">chain</span><span class="p">(</span><span class="o">*</span><span class="p">[</span><span class="n">cube_to_indices</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ks</span><span class="p">])</span>
-            <span class="n">dist</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">nn_coords</span> <span class="o">-</span> <span class="n">i</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">nns</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">coord</span><span class="p">,</span> <span class="n">index</span><span class="p">,</span> <span class="n">image</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nn_coords</span><span class="p">,</span> <span class="n">nn_indices</span><span class="p">,</span> <span class="n">nn_images</span><span class="p">,</span> <span class="n">dist</span><span class="p">):</span>
-                <span class="c1"># filtering out all sites that are beyond the cutoff and</span>
-                <span class="c1"># those that are identical to center site</span>
-                <span class="k">if</span> <span class="n">d</span> <span class="o">&lt;</span> <span class="n">r</span> <span class="o">+</span> <span class="n">numerical_tol</span> <span class="ow">and</span> <span class="p">(</span><span class="n">d</span> <span class="o">&gt;</span> <span class="n">numerical_tol</span> <span class="ow">or</span>
-                                              <span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">!=</span> <span class="n">site</span><span class="p">):</span>
-                    <span class="n">nnsite</span> <span class="o">=</span> <span class="n">PeriodicSite</span><span class="p">(</span><span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">coord</span><span class="p">,</span> <span class="n">latt</span><span class="p">,</span>
-                                          <span class="n">properties</span><span class="o">=</span><span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">properties</span><span class="p">,</span>
-                                          <span class="n">coords_are_cartesian</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-                    <span class="n">nn</span> <span class="o">=</span> <span class="n">Neighbor</span><span class="p">(</span><span class="n">site</span><span class="o">=</span><span class="n">nnsite</span><span class="p">,</span> <span class="n">distance</span><span class="o">=</span><span class="n">d</span><span class="p">,</span>
-                                  <span class="n">index</span><span class="o">=</span><span class="n">index</span><span class="p">,</span> <span class="n">image</span><span class="o">=</span><span class="nb">tuple</span><span class="p">(</span><span class="n">image</span><span class="p">))</span>
-                    <span class="n">nns</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nn</span><span class="p">)</span>
-
+            <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">point_neighbor</span><span class="p">:</span>
+                <span class="n">coord</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">index</span><span class="p">,</span> <span class="n">image</span> <span class="o">=</span> <span class="n">n</span>
+                <span class="k">if</span> <span class="p">(</span><span class="n">d</span> <span class="o">&gt;</span> <span class="n">numerical_tol</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">!=</span> <span class="n">site</span><span class="p">):</span>
+                    <span class="n">nn_site</span> <span class="o">=</span> <span class="n">PeriodicSite</span><span class="p">(</span><span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">coord</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">,</span>
+                                           <span class="n">properties</span><span class="o">=</span><span class="bp">self</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">properties</span><span class="p">,</span>
+                                           <span class="n">coords_are_cartesian</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+                    <span class="n">neighbor</span> <span class="o">=</span> <span class="n">Neighbor</span><span class="p">(</span><span class="n">site</span><span class="o">=</span><span class="n">nn_site</span><span class="p">,</span> <span class="n">distance</span><span class="o">=</span><span class="n">d</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="n">index</span><span class="p">,</span> <span class="n">image</span><span class="o">=</span><span class="nb">tuple</span><span class="p">(</span><span class="n">image</span><span class="p">))</span>
+                    <span class="n">nns</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">neighbor</span><span class="p">)</span>
             <span class="n">neighbors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nns</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">neighbors</span></div>
 
@@ -1438,8 +1369,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
                 <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
                 <span class="n">site_properties</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">,</span>
                 <span class="n">charge</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_charge</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span></div>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span></div>
 
 <div class="viewcode-block" id="IStructure.copy"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.IStructure.copy">[docs]</a>    <span class="k">def</span> <span class="nf">copy</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">site_properties</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">sanitize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -1472,20 +1402,19 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
                                   <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">,</span>
                                   <span class="n">charge</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_charge</span><span class="p">,</span>
                                   <span class="n">site_properties</span><span class="o">=</span><span class="n">props</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">reduced_latt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span><span class="o">.</span><span class="n">get_lll_reduced_lattice</span><span class="p">()</span>
-            <span class="n">new_sites</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-                <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">reduced_latt</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">coords</span><span class="p">)</span>
-                <span class="n">site_props</span> <span class="o">=</span> <span class="p">{}</span>
-                <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">props</span><span class="p">:</span>
-                    <span class="n">site_props</span><span class="p">[</span><span class="n">p</span><span class="p">]</span> <span class="o">=</span> <span class="n">props</span><span class="p">[</span><span class="n">p</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
-                <span class="n">new_sites</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">PeriodicSite</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">species</span><span class="p">,</span>
-                                              <span class="n">frac_coords</span><span class="p">,</span> <span class="n">reduced_latt</span><span class="p">,</span>
-                                              <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
-                                              <span class="n">properties</span><span class="o">=</span><span class="n">site_props</span><span class="p">))</span>
-            <span class="n">new_sites</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_sites</span><span class="p">)</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="n">from_sites</span><span class="p">(</span><span class="n">new_sites</span><span class="p">,</span> <span class="n">charge</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_charge</span><span class="p">)</span></div>
+        <span class="n">reduced_latt</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span><span class="o">.</span><span class="n">get_lll_reduced_lattice</span><span class="p">()</span>
+        <span class="n">new_sites</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+            <span class="n">frac_coords</span> <span class="o">=</span> <span class="n">reduced_latt</span><span class="o">.</span><span class="n">get_fractional_coords</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">coords</span><span class="p">)</span>
+            <span class="n">site_props</span> <span class="o">=</span> <span class="p">{}</span>
+            <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">props</span><span class="p">:</span>
+                <span class="n">site_props</span><span class="p">[</span><span class="n">p</span><span class="p">]</span> <span class="o">=</span> <span class="n">props</span><span class="p">[</span><span class="n">p</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
+            <span class="n">new_sites</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">PeriodicSite</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">species</span><span class="p">,</span>
+                                          <span class="n">frac_coords</span><span class="p">,</span> <span class="n">reduced_latt</span><span class="p">,</span>
+                                          <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                                          <span class="n">properties</span><span class="o">=</span><span class="n">site_props</span><span class="p">))</span>
+        <span class="n">new_sites</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_sites</span><span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="n">from_sites</span><span class="p">(</span><span class="n">new_sites</span><span class="p">,</span> <span class="n">charge</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_charge</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="IStructure.interpolate"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.IStructure.interpolate">[docs]</a>    <span class="k">def</span> <span class="nf">interpolate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">end_structure</span><span class="p">,</span>
                     <span class="n">nimages</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="n">Iterable</span><span class="p">]</span> <span class="o">=</span> <span class="mi">10</span><span class="p">,</span>
@@ -1530,8 +1459,8 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="n">images</span> <span class="o">=</span> <span class="n">nimages</span>
 
         <span class="c1"># Check that both structures have the same species</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">species</span> <span class="o">!=</span> <span class="n">end_structure</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">site</span><span class="o">.</span><span class="n">species</span> <span class="o">!=</span> <span class="n">end_structure</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">:</span>
                 <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Different species!</span><span class="se">\n</span><span class="s2">Structure 1:</span><span class="se">\n</span><span class="s2">&quot;</span> <span class="o">+</span>
                                  <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Structure 2</span><span class="se">\n</span><span class="s2">&quot;</span> <span class="o">+</span>
                                  <span class="nb">str</span><span class="p">(</span><span class="n">end_structure</span><span class="p">))</span>
@@ -1654,11 +1583,10 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">def</span> <span class="nf">site_label</span><span class="p">(</span><span class="n">site</span><span class="p">):</span>
             <span class="k">if</span> <span class="ow">not</span> <span class="n">use_site_props</span><span class="p">:</span>
                 <span class="k">return</span> <span class="n">site</span><span class="o">.</span><span class="n">species_string</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">d</span> <span class="o">=</span> <span class="p">[</span><span class="n">site</span><span class="o">.</span><span class="n">species_string</span><span class="p">]</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
-                    <span class="n">d</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s2">&quot;=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="p">[</span><span class="n">k</span><span class="p">]))</span>
-                <span class="k">return</span> <span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
+            <span class="n">d</span> <span class="o">=</span> <span class="p">[</span><span class="n">site</span><span class="o">.</span><span class="n">species_string</span><span class="p">]</span>
+            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
+                <span class="n">d</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s2">&quot;=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="p">[</span><span class="n">k</span><span class="p">]))</span>
+            <span class="k">return</span> <span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
 
         <span class="c1"># group sites by species string</span>
         <span class="n">sites</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_sites</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="n">site_label</span><span class="p">)</span>
@@ -1737,7 +1665,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="n">np</span><span class="o">.</span><span class="n">fill_diagonal</span><span class="p">(</span><span class="n">non_nbrs</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
             <span class="n">grouped_non_nbrs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">non_nbrs</span><span class="p">)</span>
 
-        <span class="n">num_fu</span> <span class="o">=</span> <span class="n">functools</span><span class="o">.</span><span class="n">reduce</span><span class="p">(</span><span class="n">gcd</span><span class="p">,</span> <span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="n">grouped_sites</span><span class="p">))</span>
+        <span class="n">num_fu</span> <span class="o">=</span> <span class="n">functools</span><span class="o">.</span><span class="n">reduce</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">gcd</span><span class="p">,</span> <span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="n">grouped_sites</span><span class="p">))</span>
         <span class="k">for</span> <span class="n">size</span><span class="p">,</span> <span class="n">ms</span> <span class="ow">in</span> <span class="n">get_hnf</span><span class="p">(</span><span class="n">num_fu</span><span class="p">):</span>
             <span class="n">inv_ms</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">ms</span><span class="p">)</span>
 
@@ -1994,14 +1922,13 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="k">if</span> <span class="n">filename</span><span class="p">:</span>
                 <span class="k">with</span> <span class="n">zopen</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s2">&quot;wt&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                     <span class="n">yaml</span><span class="o">.</span><span class="n">safe_dump</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">as_dict</span><span class="p">(),</span> <span class="n">f</span><span class="p">)</span>
-                <span class="k">return</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">yaml</span><span class="o">.</span><span class="n">safe_dump</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">as_dict</span><span class="p">())</span>
+                <span class="k">return</span> <span class="kc">None</span>
+            <span class="k">return</span> <span class="n">yaml</span><span class="o">.</span><span class="n">safe_dump</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">as_dict</span><span class="p">())</span>
 
         <span class="k">if</span> <span class="n">filename</span><span class="p">:</span>
             <span class="n">writer</span><span class="o">.</span><span class="n">write_file</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">writer</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span></div>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="k">return</span> <span class="n">writer</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span></div>
 
 <div class="viewcode-block" id="IStructure.from_str"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.IStructure.from_str">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_str</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_string</span><span class="p">,</span> <span class="n">fmt</span><span class="p">,</span> <span class="n">primitive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">sort</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
@@ -2090,7 +2017,6 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="kn">from</span> <span class="nn">pymatgen.io.lmto</span> <span class="k">import</span> <span class="n">LMTOCtrl</span>
         <span class="kn">from</span> <span class="nn">pymatgen.io.vasp</span> <span class="k">import</span> <span class="n">Vasprun</span><span class="p">,</span> <span class="n">Chgcar</span>
         <span class="kn">from</span> <span class="nn">pymatgen.io.exciting</span> <span class="k">import</span> <span class="n">ExcitingInput</span>
-        <span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
         <span class="n">fname</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
         <span class="k">with</span> <span class="n">zopen</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s2">&quot;rt&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
             <span class="n">contents</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
@@ -2098,7 +2024,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;cif&quot;</span><span class="p">,</span>
                                 <span class="n">primitive</span><span class="o">=</span><span class="n">primitive</span><span class="p">,</span> <span class="n">sort</span><span class="o">=</span><span class="n">sort</span><span class="p">,</span>
                                 <span class="n">merge_tol</span><span class="o">=</span><span class="n">merge_tol</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*POSCAR*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*CONTCAR*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.vasp&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*POSCAR*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*CONTCAR*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.vasp&quot;</span><span class="p">):</span>
             <span class="n">s</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;poscar&quot;</span><span class="p">,</span>
                              <span class="n">primitive</span><span class="o">=</span><span class="n">primitive</span><span class="p">,</span> <span class="n">sort</span><span class="o">=</span><span class="n">sort</span><span class="p">,</span>
                              <span class="n">merge_tol</span><span class="o">=</span><span class="n">merge_tol</span><span class="p">)</span>
@@ -2206,7 +2132,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">for</span> <span class="n">site</span> <span class="ow">in</span> <span class="n">sites</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">sp</span><span class="p">,</span> <span class="n">amt</span> <span class="ow">in</span> <span class="n">site</span><span class="o">.</span><span class="n">species</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
                 <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sp</span><span class="p">,</span> <span class="n">DummySpecie</span><span class="p">):</span>
-                    <span class="n">nelectrons</span> <span class="o">+=</span> <span class="n">sp</span><span class="o">.</span><span class="n">Z</span> <span class="o">*</span> <span class="n">amt</span>
+                    <span class="n">nelectrons</span> <span class="o">+=</span> <span class="n">sp</span><span class="o">.</span><span class="n">Z</span> <span class="o">*</span> <span class="n">amt</span>  <span class="c1"># type: ignore</span>
         <span class="n">nelectrons</span> <span class="o">-=</span> <span class="n">charge</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_nelectrons</span> <span class="o">=</span> <span class="n">nelectrons</span>
         <span class="k">if</span> <span class="n">spin_multiplicity</span><span class="p">:</span>
@@ -2643,8 +2569,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="n">filename</span><span class="p">:</span>
             <span class="n">writer</span><span class="o">.</span><span class="n">write_file</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">writer</span><span class="p">)</span></div>
+        <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">writer</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="IMolecule.from_str"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.IMolecule.from_str">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_str</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_string</span><span class="p">,</span> <span class="n">fmt</span><span class="p">):</span>
@@ -2703,27 +2628,25 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="n">fname</span> <span class="o">=</span> <span class="n">filename</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span>
         <span class="k">if</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.xyz*&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;xyz&quot;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">any</span><span class="p">([</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="s2">&quot;*.</span><span class="si">{}</span><span class="s2">*&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">r</span><span class="p">))</span>
-                  <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;gjf&quot;</span><span class="p">,</span> <span class="s2">&quot;g03&quot;</span><span class="p">,</span> <span class="s2">&quot;g09&quot;</span><span class="p">,</span> <span class="s2">&quot;com&quot;</span><span class="p">,</span> <span class="s2">&quot;inp&quot;</span><span class="p">]]):</span>
+        <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="s2">&quot;*.</span><span class="si">{}</span><span class="s2">*&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">r</span><span class="p">))</span>
+                <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;gjf&quot;</span><span class="p">,</span> <span class="s2">&quot;g03&quot;</span><span class="p">,</span> <span class="s2">&quot;g09&quot;</span><span class="p">,</span> <span class="s2">&quot;com&quot;</span><span class="p">,</span> <span class="s2">&quot;inp&quot;</span><span class="p">]]):</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;g09&quot;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">any</span><span class="p">([</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="s2">&quot;*.</span><span class="si">{}</span><span class="s2">*&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">r</span><span class="p">))</span>
-                  <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;out&quot;</span><span class="p">,</span> <span class="s2">&quot;lis&quot;</span><span class="p">,</span> <span class="s2">&quot;log&quot;</span><span class="p">]]):</span>
+        <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="o">.</span><span class="n">lower</span><span class="p">(),</span> <span class="s2">&quot;*.</span><span class="si">{}</span><span class="s2">*&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">r</span><span class="p">))</span>
+                <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;out&quot;</span><span class="p">,</span> <span class="s2">&quot;lis&quot;</span><span class="p">,</span> <span class="s2">&quot;log&quot;</span><span class="p">]]):</span>
             <span class="k">return</span> <span class="n">GaussianOutput</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span><span class="o">.</span><span class="n">final_structure</span>
-        <span class="k">elif</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.json*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.mson*&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.json*&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.mson*&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;json&quot;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.yaml*&quot;</span><span class="p">):</span>
+        <span class="k">if</span> <span class="n">fnmatch</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;*.yaml*&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_str</span><span class="p">(</span><span class="n">contents</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s2">&quot;yaml&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">pymatgen.io.babel</span> <span class="k">import</span> <span class="n">BabelMolAdaptor</span>
-            <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;\.(pdb|mol|mdl|sdf|sd|ml2|sy2|mol2|cml|mrv)&quot;</span><span class="p">,</span>
-                          <span class="n">filename</span><span class="o">.</span><span class="n">lower</span><span class="p">())</span>
-            <span class="k">if</span> <span class="n">m</span><span class="p">:</span>
-                <span class="n">new</span> <span class="o">=</span> <span class="n">BabelMolAdaptor</span><span class="o">.</span><span class="n">from_file</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span>
-                                                <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span><span class="o">.</span><span class="n">pymatgen_mol</span>
-                <span class="n">new</span><span class="o">.</span><span class="vm">__class__</span> <span class="o">=</span> <span class="bp">cls</span>
-                <span class="k">return</span> <span class="n">new</span>
-
-        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Unrecognized file extension!&quot;</span><span class="p">)</span></div></div>
+        <span class="kn">from</span> <span class="nn">pymatgen.io.babel</span> <span class="k">import</span> <span class="n">BabelMolAdaptor</span>
+        <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;\.(pdb|mol|mdl|sdf|sd|ml2|sy2|mol2|cml|mrv)&quot;</span><span class="p">,</span>
+                      <span class="n">filename</span><span class="o">.</span><span class="n">lower</span><span class="p">())</span>
+        <span class="k">if</span> <span class="n">m</span><span class="p">:</span>
+            <span class="n">new</span> <span class="o">=</span> <span class="n">BabelMolAdaptor</span><span class="o">.</span><span class="n">from_file</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span>
+                                            <span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span><span class="o">.</span><span class="n">pymatgen_mol</span>
+            <span class="n">new</span><span class="o">.</span><span class="vm">__class__</span> <span class="o">=</span> <span class="bp">cls</span>
+            <span class="k">return</span> <span class="n">new</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Cannot determine file type.&quot;</span><span class="p">)</span></div></div>
 
 
 <div class="viewcode-block" id="Structure"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.Structure">[docs]</a><span class="k">class</span> <span class="nc">Structure</span><span class="p">(</span><span class="n">IStructure</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">MutableSequence</span><span class="p">):</span>
@@ -2838,7 +2761,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
                 <span class="k">if</span> <span class="n">site</span><span class="o">.</span><span class="n">lattice</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_lattice</span><span class="p">:</span>
                     <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;PeriodicSite added must have same lattice &quot;</span>
                                      <span class="s2">&quot;as Structure!&quot;</span><span class="p">)</span>
-                <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
                     <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Site assignments makes sense only for &quot;</span>
                                      <span class="s2">&quot;single int indices!&quot;</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">_sites</span><span class="p">[</span><span class="n">ii</span><span class="p">]</span> <span class="o">=</span> <span class="n">site</span>
@@ -3008,8 +2931,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="k">if</span> <span class="n">func_grp</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">FunctionalGroups</span><span class="p">:</span>
                 <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s2">&quot;Can&#39;t find functional group in list. &quot;</span>
                                    <span class="s2">&quot;Provide explicit coordinate instead&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">func_grp</span> <span class="o">=</span> <span class="n">FunctionalGroups</span><span class="p">[</span><span class="n">func_grp</span><span class="p">]</span>
+            <span class="n">func_grp</span> <span class="o">=</span> <span class="n">FunctionalGroups</span><span class="p">[</span><span class="n">func_grp</span><span class="p">]</span>
 
         <span class="c1"># If a bond length can be found, modify func_grp so that the X-group</span>
         <span class="c1"># bond length is equal to the bond length.</span>
@@ -3045,9 +2967,8 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">elif</span> <span class="nb">abs</span><span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="n">angle</span><span class="p">)</span> <span class="o">-</span> <span class="mi">180</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
             <span class="c1"># We have a 180 degree angle. Simply do an inversion about the</span>
             <span class="c1"># origin</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">func_grp</span><span class="p">)):</span>
-                <span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">,</span>
-                               <span class="n">origin</span> <span class="o">-</span> <span class="p">(</span><span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">coords</span> <span class="o">-</span> <span class="n">origin</span><span class="p">))</span>
+            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">fg</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">func_grp</span><span class="p">):</span>
+                <span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">fg</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">origin</span> <span class="o">-</span> <span class="p">(</span><span class="n">fg</span><span class="o">.</span><span class="n">coords</span> <span class="o">-</span> <span class="n">origin</span><span class="p">))</span>
 
         <span class="c1"># Remove the atom to be replaced, and add the rest of the functional</span>
         <span class="c1"># group.</span>
@@ -3700,8 +3621,7 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="k">if</span> <span class="n">func_grp</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">FunctionalGroups</span><span class="p">:</span>
                 <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s2">&quot;Can&#39;t find functional group in list. &quot;</span>
                                    <span class="s2">&quot;Provide explicit coordinate instead&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">func_grp</span> <span class="o">=</span> <span class="n">FunctionalGroups</span><span class="p">[</span><span class="n">func_grp</span><span class="p">]</span>
+            <span class="n">func_grp</span> <span class="o">=</span> <span class="n">FunctionalGroups</span><span class="p">[</span><span class="n">func_grp</span><span class="p">]</span>
 
         <span class="c1"># If a bond length can be found, modify func_grp so that the X-group</span>
         <span class="c1"># bond length is equal to the bond length.</span>
@@ -3732,9 +3652,8 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
         <span class="k">elif</span> <span class="nb">abs</span><span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="n">angle</span><span class="p">)</span> <span class="o">-</span> <span class="mi">180</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
             <span class="c1"># We have a 180 degree angle. Simply do an inversion about the</span>
             <span class="c1"># origin</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">func_grp</span><span class="p">)):</span>
-                <span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">species</span><span class="p">,</span>
-                               <span class="n">origin</span> <span class="o">-</span> <span class="p">(</span><span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">coords</span> <span class="o">-</span> <span class="n">origin</span><span class="p">))</span>
+            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">fg</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">func_grp</span><span class="p">):</span>
+                <span class="n">func_grp</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">fg</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">origin</span> <span class="o">-</span> <span class="p">(</span><span class="n">fg</span><span class="o">.</span><span class="n">coords</span> <span class="o">-</span> <span class="n">origin</span><span class="p">))</span>
 
         <span class="c1"># Remove the atom to be replaced, and add the rest of the functional</span>
         <span class="c1"># group.</span>
@@ -3743,69 +3662,6 @@ <h1>Source code for pymatgen.core.structure</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">_sites</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">site</span><span class="p">)</span></div></div>
 
 
-<span class="c1"># The following internal methods are used in the get_all_neighbors method.</span>
-
-
-<span class="k">def</span> <span class="nf">_compute_cube_index</span><span class="p">(</span><span class="n">coords</span><span class="p">,</span> <span class="n">global_min</span><span class="p">,</span> <span class="n">radius</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Compute the cube index from coordinates</span>
-
-<span class="sd">    :param coords: (nx3 array) atom coordinates</span>
-<span class="sd">    :param global_min: (float) lower boundary of coordinates</span>
-<span class="sd">    :param radius: (float) cutoff radius</span>
-<span class="sd">    :return: (nx3 array) int indices</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">((</span><span class="n">coords</span> <span class="o">-</span> <span class="n">global_min</span><span class="p">)</span> <span class="o">/</span> <span class="n">radius</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_one_to_three</span><span class="p">(</span><span class="n">label1d</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Convert a 1D index array to 3D index array</span>
-
-<span class="sd">    :param label1d: (array) 1D index array</span>
-<span class="sd">    :param ny: (int) number of cells in y direction</span>
-<span class="sd">    :param nz: (int) number of cells in z direction</span>
-<span class="sd">    :return: (nx3) int array of index</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">last</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">(</span><span class="n">label1d</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
-    <span class="n">second</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mod</span><span class="p">((</span><span class="n">label1d</span> <span class="o">-</span> <span class="n">last</span><span class="p">)</span> <span class="o">/</span> <span class="n">nz</span><span class="p">,</span> <span class="n">ny</span><span class="p">)</span>
-    <span class="n">first</span> <span class="o">=</span> <span class="p">(</span><span class="n">label1d</span> <span class="o">-</span> <span class="n">last</span> <span class="o">-</span> <span class="n">second</span> <span class="o">*</span> <span class="n">nz</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">ny</span> <span class="o">*</span> <span class="n">nz</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">first</span><span class="p">,</span> <span class="n">second</span><span class="p">,</span> <span class="n">last</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_three_to_one</span><span class="p">(</span><span class="n">label3d</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    The reverse of one_to_three</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">label3d</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">ny</span> <span class="o">*</span> <span class="n">nz</span> <span class="o">+</span>
-                    <span class="n">label3d</span><span class="p">[:,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">nz</span> <span class="o">+</span> <span class="n">label3d</span><span class="p">[:,</span> <span class="mi">2</span><span class="p">])</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-
-
-<div class="viewcode-block" id="find_neighbors"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.find_neighbors">[docs]</a><span class="k">def</span> <span class="nf">find_neighbors</span><span class="p">(</span><span class="n">label</span><span class="p">,</span> <span class="n">nx</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Given a cube index, find the neighbor cube indices</span>
-<span class="sd">    :param label: (array) (n,) or (n x 3) indice array</span>
-<span class="sd">    :param nx: (int) number of cells in y direction</span>
-<span class="sd">    :param ny: (int) number of cells in y direction</span>
-<span class="sd">    :param nz: (int) number of cells in z direction</span>
-<span class="sd">    :return: neighbor cell indices</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">array</span> <span class="o">=</span> <span class="p">[[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]]</span> <span class="o">*</span> <span class="mi">3</span>
-    <span class="n">neighbor_vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">itertools</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="o">*</span><span class="n">array</span><span class="p">)),</span>
-                                <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">label</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">label3d</span> <span class="o">=</span> <span class="n">_one_to_three</span><span class="p">(</span><span class="n">label</span><span class="p">,</span> <span class="n">ny</span><span class="p">,</span> <span class="n">nz</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">label3d</span> <span class="o">=</span> <span class="n">label</span>
-    <span class="n">all_labels</span> <span class="o">=</span> <span class="n">label3d</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">,</span> <span class="p">:]</span> <span class="o">-</span> <span class="n">neighbor_vectors</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:,</span> <span class="p">:]</span>
-    <span class="n">filtered_labels</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="c1"># filter out out-of-bound labels i.e., label &lt; 0</span>
-    <span class="k">for</span> <span class="n">labels</span> <span class="ow">in</span> <span class="n">all_labels</span><span class="p">:</span>
-        <span class="n">ind</span> <span class="o">=</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">nx</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">ny</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">labels</span><span class="p">[:,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">nz</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">labels</span> <span class="o">&gt;</span> <span class="o">-</span><span class="mf">1e-5</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-        <span class="n">filtered_labels</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">labels</span><span class="p">[</span><span class="n">ind</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">filtered_labels</span></div>
-
-
 <div class="viewcode-block" id="StructureError"><a class="viewcode-back" href="../../../pymatgen.core.structure.html#pymatgen.core.structure.StructureError">[docs]</a><span class="k">class</span> <span class="nc">StructureError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Exception class for Structure.</span>
@@ -3856,7 +3712,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/surface.html b/docs/_modules/pymatgen/core/surface.html
index 7c6737ac5a1..d31743bd0f1 100644
--- a/docs/_modules/pymatgen/core/surface.html
+++ b/docs/_modules/pymatgen/core/surface.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -571,7 +570,7 @@ <h1>Source code for pymatgen.core.surface</h1><div class="highlight"><pre>
         <span class="n">surf_sites_dict</span><span class="p">,</span> <span class="n">properties</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;top&quot;</span><span class="p">:</span> <span class="p">[],</span> <span class="s2">&quot;bottom&quot;</span><span class="p">:</span> <span class="p">[]},</span> <span class="p">[]</span>
         <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">site</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
             <span class="c1"># Determine if site is closer to the top or bottom of the slab</span>
-            <span class="n">top</span> <span class="o">=</span> <span class="kc">True</span> <span class="k">if</span> <span class="n">site</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">center_of_mass</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="k">else</span> <span class="kc">False</span>
+            <span class="n">top</span> <span class="o">=</span> <span class="n">site</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">center_of_mass</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
 
             <span class="k">try</span><span class="p">:</span>
                 <span class="c1"># A site is a surface site, if its environment does</span>
@@ -2032,7 +2031,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/tensors.html b/docs/_modules/pymatgen/core/tensors.html
index ffb1a764953..5bd8860515a 100644
--- a/docs/_modules/pymatgen/core/tensors.html
+++ b/docs/_modules/pymatgen/core/tensors.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -55,13 +54,16 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
 <span class="sd">that provides basic methods for creating and manipulating rank 2 tensors</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
-<span class="kn">from</span> <span class="nn">scipy.linalg</span> <span class="k">import</span> <span class="n">polar</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">itertools</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">import</span> <span class="nn">collections</span>
 <span class="kn">import</span> <span class="nn">string</span>
 <span class="kn">import</span> <span class="nn">os</span>
+
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
+<span class="kn">from</span> <span class="nn">scipy.linalg</span> <span class="k">import</span> <span class="n">polar</span>
+
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">from</span> <span class="nn">monty.serialization</span> <span class="k">import</span> <span class="n">loadfn</span>
 
@@ -144,8 +146,7 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obj</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">obj</span><span class="p">[()]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="o">.</span><span class="n">__array_wrap__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="o">.</span><span class="n">__array_wrap__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__hash__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -703,7 +704,7 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
                 <span class="c1"># in the guess in the guess</span>
                 <span class="n">merge</span><span class="p">(</span><span class="n">guess</span><span class="p">,</span> <span class="n">rot</span><span class="p">)</span>
             <span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Preconditioning for voigt symmetry&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">sops</span><span class="p">)))</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Preconditioning for voigt symmetry&quot;</span><span class="p">)</span>
             <span class="k">if</span> <span class="n">vsym</span><span class="p">:</span>
                 <span class="n">v</span> <span class="o">=</span> <span class="n">guess</span><span class="o">.</span><span class="n">voigt</span>
                 <span class="n">perms</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">itertools</span><span class="o">.</span><span class="n">permutations</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">v</span><span class="o">.</span><span class="n">shape</span><span class="p">))))</span>
@@ -762,8 +763,7 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
         <span class="n">voigt</span> <span class="o">=</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;voigt&#39;</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">voigt</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_voigt</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;input_array&quot;</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;input_array&quot;</span><span class="p">])</span></div></div>
+        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;input_array&quot;</span><span class="p">])</span></div></div>
 
 
 <div class="viewcode-block" id="TensorCollection"><a class="viewcode-back" href="../../../pymatgen.core.tensors.html#pymatgen.core.tensors.TensorCollection">[docs]</a><span class="k">class</span> <span class="nc">TensorCollection</span><span class="p">(</span><span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Sequence</span><span class="p">,</span> <span class="n">MSONable</span><span class="p">):</span>
@@ -935,8 +935,7 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
         <span class="n">voigt</span> <span class="o">=</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;voigt&#39;</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">voigt</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="o">.</span><span class="n">from_voigt</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;tensor_list&quot;</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;tensor_list&quot;</span><span class="p">])</span></div></div>
+        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;tensor_list&quot;</span><span class="p">])</span></div></div>
 
 
 <div class="viewcode-block" id="SquareTensor"><a class="viewcode-back" href="../../../pymatgen.core.tensors.html#pymatgen.core.tensors.SquareTensor">[docs]</a><span class="k">class</span> <span class="nc">SquareTensor</span><span class="p">(</span><span class="n">Tensor</span><span class="p">):</span>
@@ -1173,7 +1172,7 @@ <h1>Source code for pymatgen.core.tensors</h1><div class="highlight"><pre>
         <span class="n">indices</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">where</span><span class="p">(</span><span class="n">mask</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Tensor key collision.&quot;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">None</span>
         <span class="k">return</span> <span class="n">indices</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span></div>
 </pre></div>
@@ -1214,7 +1213,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/trajectory.html b/docs/_modules/pymatgen/core/trajectory.html
index c1ff9158997..350f9452dc6 100644
--- a/docs/_modules/pymatgen/core/trajectory.html
+++ b/docs/_modules/pymatgen/core/trajectory.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -57,13 +56,14 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">from</span> <span class="nn">fnmatch</span> <span class="k">import</span> <span class="n">fnmatch</span>
+<span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span><span class="p">,</span> <span class="n">Sequence</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span><span class="p">,</span> <span class="n">Lattice</span><span class="p">,</span> <span class="n">Element</span><span class="p">,</span> <span class="n">Specie</span><span class="p">,</span> <span class="n">DummySpecie</span><span class="p">,</span> <span class="n">Composition</span>
 <span class="kn">from</span> <span class="nn">pymatgen.io.vasp.outputs</span> <span class="k">import</span> <span class="n">Xdatcar</span><span class="p">,</span> <span class="n">Vasprun</span>
-<span class="kn">from</span> <span class="nn">typing</span> <span class="k">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Union</span><span class="p">,</span> <span class="n">Sequence</span>
+
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Eric Sivonxay, Shyam Dwaraknath&quot;</span>
 <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0&quot;</span>
@@ -164,8 +164,7 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
             <span class="n">cumulative_displacements</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
             <span class="n">positions</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">base_positions</span> <span class="o">+</span> <span class="n">cumulative_displacements</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span> <span class="o">=</span> <span class="n">positions</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">coords_are_displacement</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">return</span></div>
+            <span class="bp">self</span><span class="o">.</span><span class="n">coords_are_displacement</span> <span class="o">=</span> <span class="kc">False</span></div>
 
 <div class="viewcode-block" id="Trajectory.to_displacements"><a class="viewcode-back" href="../../../pymatgen.core.trajectory.html#pymatgen.core.trajectory.Trajectory.to_displacements">[docs]</a>    <span class="k">def</span> <span class="nf">to_displacements</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -178,8 +177,7 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
             <span class="n">displacements</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">subtract</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">item</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">displacements</span><span class="p">]</span>
 
             <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span> <span class="o">=</span> <span class="n">displacements</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">coords_are_displacement</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="k">return</span></div>
+            <span class="bp">self</span><span class="o">.</span><span class="n">coords_are_displacement</span> <span class="o">=</span> <span class="kc">True</span></div>
 
 <div class="viewcode-block" id="Trajectory.extend"><a class="viewcode-back" href="../../../pymatgen.core.trajectory.html#pymatgen.core.trajectory.Trajectory.extend">[docs]</a>    <span class="k">def</span> <span class="nf">extend</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">trajectory</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -231,74 +229,71 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
                     <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Selected frame exceeds trajectory length&#39;</span><span class="p">)</span>
                 <span class="c1"># For integer input, return the displacements at that timestep</span>
                 <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">slice</span><span class="p">):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">slice</span><span class="p">):</span>
                 <span class="c1"># For slice input, return a list of the displacements</span>
                 <span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span> <span class="o">=</span> <span class="n">frames</span><span class="o">.</span><span class="n">indices</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">))</span>
                 <span class="k">return</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span><span class="p">)]</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
                 <span class="c1"># For list input, return a list of the displacements</span>
                 <span class="n">pruned_frames</span> <span class="o">=</span> <span class="p">[</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">frames</span> <span class="k">if</span> <span class="n">i</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">)]</span>  <span class="c1"># Get rid of frames that exceed trajectory length</span>
                 <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pruned_frames</span><span class="p">)</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">frames</span><span class="p">):</span>
                     <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Some or all selected frames exceed trajectory length&#39;</span><span class="p">)</span>
                 <span class="k">return</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Given accessor is not of type int, slice, list, or array&#39;</span><span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Given accessor is not of type int, slice, list, or array&#39;</span><span class="p">)</span>
 
         <span class="c1"># If trajectory is in positions mode, return a structure for the given frame or trajectory for the given frames</span>
-        <span class="k">elif</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">coords_are_displacement</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">frames</span> <span class="o">&gt;=</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Selected frame exceeds trajectory length&#39;</span><span class="p">)</span>
-                <span class="c1"># For integer input, return the structure at that timestep</span>
-                <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span>
-                <span class="n">site_properties</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="k">else</span> <span class="kc">None</span>
-                <span class="n">site_properties</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="k">else</span> <span class="kc">None</span>
-                <span class="k">return</span> <span class="n">Structure</span><span class="p">(</span><span class="n">Lattice</span><span class="p">(</span><span class="n">lattice</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">frames</span><span class="p">],</span>
-                                 <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span>
-                                 <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">slice</span><span class="p">):</span>
-                <span class="c1"># For slice input, return a trajectory of the sliced time</span>
-                <span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span> <span class="o">=</span> <span class="n">frames</span><span class="o">.</span><span class="n">indices</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">))</span>
-                <span class="n">pruned_frames</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
-                <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="n">frac_coords</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">site_properties</span> <span class="o">=</span> <span class="kc">None</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">frame_properties</span> <span class="o">=</span> <span class="p">{}</span>
-                    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                        <span class="n">frame_properties</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">frame_properties</span> <span class="o">=</span> <span class="kc">None</span>
-                <span class="k">return</span> <span class="n">Trajectory</span><span class="p">(</span><span class="n">lattice</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="n">time_step</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">time_step</span><span class="p">,</span>
-                                  <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span> <span class="n">frame_properties</span><span class="o">=</span><span class="n">frame_properties</span><span class="p">,</span>
-                                  <span class="n">constant_lattice</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span><span class="p">,</span> <span class="n">coords_are_displacement</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-                                  <span class="n">base_positions</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">base_positions</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="c1"># For list input, return a trajectory of the specified times</span>
-                <span class="n">pruned_frames</span> <span class="o">=</span> <span class="p">[</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">frames</span> <span class="k">if</span> <span class="n">i</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">)]</span>  <span class="c1"># Get rid of frames that exceed trajectory length</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pruned_frames</span><span class="p">)</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">frames</span><span class="p">):</span>
-                    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Some or all selected frames exceed trajectory length&#39;</span><span class="p">)</span>
-                <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="n">frac_coords</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">site_properties</span> <span class="o">=</span> <span class="kc">None</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">frame_properties</span> <span class="o">=</span> <span class="p">{}</span>
-                    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                        <span class="n">frame_properties</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">frame_properties</span> <span class="o">=</span> <span class="kc">None</span>
-                <span class="k">return</span> <span class="n">Trajectory</span><span class="p">(</span><span class="n">lattice</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="n">time_step</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">time_step</span><span class="p">,</span>
-                                  <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span> <span class="n">frame_properties</span><span class="o">=</span><span class="n">frame_properties</span><span class="p">,</span>
-                                  <span class="n">constant_lattice</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span><span class="p">,</span> <span class="n">coords_are_displacement</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-                                  <span class="n">base_positions</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">base_positions</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">frames</span> <span class="o">&gt;=</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Selected frame exceeds trajectory length&#39;</span><span class="p">)</span>
+            <span class="c1"># For integer input, return the structure at that timestep</span>
+            <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span>
+            <span class="n">site_properties</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="k">else</span> <span class="kc">None</span>
+            <span class="n">site_properties</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">frames</span><span class="p">]</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="k">else</span> <span class="kc">None</span>
+            <span class="k">return</span> <span class="n">Structure</span><span class="p">(</span><span class="n">Lattice</span><span class="p">(</span><span class="n">lattice</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">frames</span><span class="p">],</span>
+                             <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span>
+                             <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="nb">slice</span><span class="p">):</span>
+            <span class="c1"># For slice input, return a trajectory of the sliced time</span>
+            <span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span> <span class="o">=</span> <span class="n">frames</span><span class="o">.</span><span class="n">indices</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">))</span>
+            <span class="n">pruned_frames</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
+            <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="n">frac_coords</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
             <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Given accessor is not of type int, slice, tuple, list, or array&#39;</span><span class="p">)</span>
+                <span class="n">site_properties</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">frame_properties</span> <span class="o">=</span> <span class="p">{}</span>
+                <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                    <span class="n">frame_properties</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">frame_properties</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">return</span> <span class="n">Trajectory</span><span class="p">(</span><span class="n">lattice</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="n">time_step</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">time_step</span><span class="p">,</span>
+                              <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span> <span class="n">frame_properties</span><span class="o">=</span><span class="n">frame_properties</span><span class="p">,</span>
+                              <span class="n">constant_lattice</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span><span class="p">,</span> <span class="n">coords_are_displacement</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+                              <span class="n">base_positions</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">base_positions</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">frames</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
+            <span class="c1"># For list input, return a trajectory of the specified times</span>
+            <span class="n">pruned_frames</span> <span class="o">=</span> <span class="p">[</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">frames</span> <span class="k">if</span> <span class="n">i</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">)]</span>  <span class="c1"># Get rid of frames that exceed trajectory length</span>
+            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pruned_frames</span><span class="p">)</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">frames</span><span class="p">):</span>
+                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Some or all selected frames exceed trajectory length&#39;</span><span class="p">)</span>
+            <span class="n">lattice</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">lattice</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span> <span class="k">else</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">lattice</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="n">frac_coords</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">frac_coords</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">site_properties</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">site_properties</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">frame_properties</span> <span class="o">=</span> <span class="p">{}</span>
+                <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">frame_properties</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                    <span class="n">frame_properties</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">pruned_frames</span><span class="p">]</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">frame_properties</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="k">return</span> <span class="n">Trajectory</span><span class="p">(</span><span class="n">lattice</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">species</span><span class="p">,</span> <span class="n">frac_coords</span><span class="p">,</span> <span class="n">time_step</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">time_step</span><span class="p">,</span>
+                              <span class="n">site_properties</span><span class="o">=</span><span class="n">site_properties</span><span class="p">,</span> <span class="n">frame_properties</span><span class="o">=</span><span class="n">frame_properties</span><span class="p">,</span>
+                              <span class="n">constant_lattice</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">constant_lattice</span><span class="p">,</span> <span class="n">coords_are_displacement</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+                              <span class="n">base_positions</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">base_positions</span><span class="p">)</span>
+        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Given accessor is not of type int, slice, tuple, list, or array&#39;</span><span class="p">)</span>
 
 <div class="viewcode-block" id="Trajectory.copy"><a class="viewcode-back" href="../../../pymatgen.core.trajectory.html#pymatgen.core.trajectory.Trajectory.copy">[docs]</a>    <span class="k">def</span> <span class="nf">copy</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -385,8 +380,8 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
             <span class="n">attribute</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">attr_1</span><span class="p">,</span> <span class="n">attr_2</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
             <span class="n">attribute_constant</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="n">attribute</span> <span class="o">=</span> <span class="p">[</span><span class="n">attr_1</span><span class="o">.</span><span class="n">copy</span><span class="p">()]</span> <span class="o">*</span> <span class="n">len_1</span> <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">list</span> <span class="k">else</span> <span class="n">attr_1</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
-            <span class="n">attribute</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="o">.</span><span class="n">copy</span><span class="p">()]</span> <span class="o">*</span> <span class="n">len_2</span> <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">attr_2</span> <span class="o">!=</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="n">attr_2</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
+            <span class="n">attribute</span> <span class="o">=</span> <span class="p">[</span><span class="n">attr_1</span><span class="o">.</span><span class="n">copy</span><span class="p">()]</span> <span class="o">*</span> <span class="n">len_1</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">attr_1</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="n">attr_1</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+            <span class="n">attribute</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="o">.</span><span class="n">copy</span><span class="p">()]</span> <span class="o">*</span> <span class="n">len_2</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">attr_2</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="n">attr_2</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
             <span class="n">attribute_constant</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="k">return</span> <span class="n">attribute</span><span class="p">,</span> <span class="n">attribute_constant</span>
 
@@ -397,7 +392,7 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">attr_2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">attr_2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">attr_2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">new_site_properties</span> <span class="o">=</span> <span class="p">[]</span>
             <span class="k">if</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
                 <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="kc">None</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)])</span>
@@ -414,35 +409,34 @@ <h1>Source code for pymatgen.core.trajectory</h1><div class="highlight"><pre>
                 <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span>
 
             <span class="k">return</span> <span class="n">new_site_properties</span>
-        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
             <span class="c1"># If both properties lists are do not change within their respective trajectory</span>
             <span class="k">if</span> <span class="n">attr_1</span> <span class="o">==</span> <span class="n">attr_2</span><span class="p">:</span>
                 <span class="c1"># If both site_properties are the same, only store one</span>
                 <span class="k">return</span> <span class="n">attr_1</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="n">attr_1</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)]</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
-                <span class="k">return</span> <span class="n">new_site_properties</span>
-        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">new_site_properties</span> <span class="o">=</span> <span class="p">[</span><span class="n">attr_1</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)]</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
+            <span class="k">return</span> <span class="n">new_site_properties</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
             <span class="c1"># Both properties have site properties that change within the trajectory, concat both together</span>
             <span class="k">return</span> <span class="p">[</span><span class="o">*</span><span class="n">attr_1</span><span class="p">,</span> <span class="o">*</span><span class="n">attr_2</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">new_site_properties</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="kc">None</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)])</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_1</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)])</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span>
 
-            <span class="k">if</span> <span class="n">attr_2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="kc">None</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span>
+        <span class="n">new_site_properties</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">if</span> <span class="n">attr_1</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="kc">None</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)])</span>
+        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_1</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_1</span><span class="p">)])</span>
+        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">attr_1</span><span class="p">)</span>
 
-            <span class="k">return</span> <span class="n">new_site_properties</span>
+        <span class="k">if</span> <span class="n">attr_2</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="kc">None</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
+        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">attr_2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">len_2</span><span class="p">)])</span>
+        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+            <span class="n">new_site_properties</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">attr_2</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="n">new_site_properties</span>
 
     <span class="nd">@staticmethod</span>
     <span class="k">def</span> <span class="nf">_combine_frame_props</span><span class="p">(</span><span class="n">attr_1</span><span class="p">,</span> <span class="n">attr_2</span><span class="p">,</span> <span class="n">len_1</span><span class="p">,</span> <span class="n">len_2</span><span class="p">):</span>
@@ -562,7 +556,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/units.html b/docs/_modules/pymatgen/core/units.html
index 9daafa11f11..444e685488f 100644
--- a/docs/_modules/pymatgen/core/units.html
+++ b/docs/_modules/pymatgen/core/units.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -57,12 +56,13 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
 <span class="sd">units are detected. An ArrayWithUnit is also implemented, which is a subclass</span>
 <span class="sd">of numpy&#39;s ndarray with similar unit features.</span>
 <span class="sd">&quot;&quot;&quot;</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">import</span> <span class="nn">collections</span>
-<span class="kn">from</span> <span class="nn">numbers</span> <span class="k">import</span> <span class="n">Number</span>
 <span class="kn">import</span> <span class="nn">numbers</span>
 <span class="kn">from</span> <span class="nn">functools</span> <span class="k">import</span> <span class="n">partial</span>
 
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">import</span> <span class="nn">scipy.constants</span> <span class="k">as</span> <span class="nn">const</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong, Matteo Giantomassi&quot;</span>
@@ -320,7 +320,7 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
             <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">DERIVED_UNITS</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
                 <span class="k">if</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
                     <span class="k">for</span> <span class="n">k2</span><span class="p">,</span> <span class="n">v2</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">k2</span><span class="p">,</span> <span class="n">Number</span><span class="p">):</span>
+                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">k2</span><span class="p">,</span> <span class="n">numbers</span><span class="o">.</span><span class="n">Number</span><span class="p">):</span>
                             <span class="n">factor</span> <span class="o">*=</span> <span class="n">k2</span> <span class="o">**</span> <span class="p">(</span><span class="n">v2</span> <span class="o">*</span> <span class="n">v</span><span class="p">)</span>
                         <span class="k">else</span><span class="p">:</span>
                             <span class="n">b</span><span class="p">[</span><span class="n">k2</span><span class="p">]</span> <span class="o">+=</span> <span class="n">v2</span> <span class="o">*</span> <span class="n">v</span>
@@ -474,14 +474,6 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">**</span> <span class="n">i</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                              <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span> <span class="o">**</span> <span class="n">i</span><span class="p">)</span>
 
-    <span class="k">def</span> <span class="nf">__div__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="n">val</span> <span class="o">=</span> <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">__div__</span><span class="p">(</span><span class="n">other</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">FloatWithUnit</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit_type</span><span class="p">,</span>
-                                 <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                             <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span> <span class="o">/</span> <span class="n">other</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-
     <span class="k">def</span> <span class="nf">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="n">val</span> <span class="o">=</span> <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__truediv__</span><span class="p">(</span><span class="n">other</span><span class="p">)</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">FloatWithUnit</span><span class="p">):</span>
@@ -687,39 +679,35 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s2">&quot;unit_type&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__mul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
                                   <span class="n">unit_type</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit_type</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># Cannot use super since it returns an instance of self.__class__</span>
-            <span class="c1"># while here we want a bare numpy array.</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
-                <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__mul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
-                <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
+        <span class="c1"># Cannot use super since it returns an instance of self.__class__</span>
+        <span class="c1"># while here we want a bare numpy array.</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__mul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
+            <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s2">&quot;unit_type&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__rmul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
                                   <span class="n">unit_type</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit_type</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
-                <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__rmul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
-                <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__rmul__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
+            <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__div__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s2">&quot;unit_type&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__div__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
                                   <span class="n">unit_type</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit_type</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
-                <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__div__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
-                <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">/</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__div__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
+            <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">/</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s2">&quot;unit_type&quot;</span><span class="p">):</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__truediv__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
                                   <span class="n">unit_type</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit_type</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_unit</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
-                <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__truediv__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
-                <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">/</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__truediv__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">other</span><span class="p">)),</span>
+            <span class="n">unit</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">unit</span> <span class="o">/</span> <span class="n">other</span><span class="o">.</span><span class="n">unit</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__neg__</span><span class="p">(),</span>
@@ -872,10 +860,9 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
 
     <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">numbers</span><span class="o">.</span><span class="n">Number</span><span class="p">):</span>
         <span class="k">return</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="n">unit</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="n">unit_type</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
         <span class="k">return</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">obj_with_unit</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">unit</span><span class="p">)</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">obj</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">ArrayWithUnit</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="n">unit</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="n">unit_type</span><span class="p">)</span></div>
+    <span class="k">return</span> <span class="n">ArrayWithUnit</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="n">unit</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="n">unit_type</span><span class="p">)</span></div>
 
 
 <div class="viewcode-block" id="unitized"><a class="viewcode-back" href="../../../pymatgen.core.units.html#pymatgen.core.units.unitized">[docs]</a><span class="k">def</span> <span class="nf">unitized</span><span class="p">(</span><span class="n">unit</span><span class="p">):</span>
@@ -903,16 +890,16 @@ <h1>Source code for pymatgen.core.units</h1><div class="highlight"><pre>
             <span class="n">val</span> <span class="o">=</span> <span class="n">f</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
             <span class="n">unit_type</span> <span class="o">=</span> <span class="n">_UNAME2UTYPE</span><span class="p">[</span><span class="n">unit</span><span class="p">]</span>
 
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">FloatWithUnit</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">ArrayWithUnit</span><span class="p">):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="p">(</span><span class="n">FloatWithUnit</span><span class="p">,</span> <span class="n">ArrayWithUnit</span><span class="p">)):</span>
                 <span class="k">return</span> <span class="n">val</span><span class="o">.</span><span class="n">to</span><span class="p">(</span><span class="n">unit</span><span class="p">)</span>
 
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Sequence</span><span class="p">):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Sequence</span><span class="p">):</span>
                 <span class="c1"># TODO: why don&#39;t we return a ArrayWithUnit?</span>
                 <span class="c1"># This complicated way is to ensure the sequence type is</span>
                 <span class="c1"># preserved (list or tuple).</span>
                 <span class="k">return</span> <span class="n">val</span><span class="o">.</span><span class="vm">__class__</span><span class="p">([</span><span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="n">unit_type</span><span class="p">,</span>
                                                     <span class="n">unit</span><span class="o">=</span><span class="n">unit</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">val</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
                 <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">val</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
                     <span class="n">val</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">FloatWithUnit</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">unit_type</span><span class="o">=</span><span class="n">unit_type</span><span class="p">,</span> <span class="n">unit</span><span class="o">=</span><span class="n">unit</span><span class="p">)</span>
             <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">val</span><span class="p">,</span> <span class="n">numbers</span><span class="o">.</span><span class="n">Number</span><span class="p">):</span>
@@ -970,7 +957,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/core/xcfunc.html b/docs/_modules/pymatgen/core/xcfunc.html
index a6556425bc3..58f1a007335 100644
--- a/docs/_modules/pymatgen/core/xcfunc.html
+++ b/docs/_modules/pymatgen/core/xcfunc.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -178,19 +177,19 @@ <h1>Source code for pymatgen.core.xcfunc</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="kc">None</span>
         <span class="k">if</span> <span class="n">ixc</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="o">**</span><span class="bp">cls</span><span class="o">.</span><span class="n">abinitixc_to_libxc</span><span class="p">[</span><span class="n">ixc</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># libxc notation employed in Abinit: a six-digit number in the form XXXCCC or CCCXXX</span>
-            <span class="c1"># ixc = str(ixc)</span>
-            <span class="c1"># assert len(ixc[1:]) == 6</span>
-            <span class="c1"># first, last = ixc[1:4], ixc[4:]</span>
-            <span class="n">ixc</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">ixc</span><span class="p">)</span>
-            <span class="n">first</span> <span class="o">=</span> <span class="n">ixc</span> <span class="o">//</span> <span class="mi">1000</span>
-            <span class="n">last</span> <span class="o">=</span> <span class="n">ixc</span> <span class="o">-</span> <span class="n">first</span> <span class="o">*</span> <span class="mi">1000</span>
-            <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">LibxcFunc</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">first</span><span class="p">)),</span> <span class="n">LibxcFunc</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">last</span><span class="p">))</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">x</span><span class="o">.</span><span class="n">is_x_kind</span><span class="p">:</span>
-                <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">c</span><span class="p">,</span> <span class="n">x</span>  <span class="c1"># Swap</span>
-            <span class="k">assert</span> <span class="n">x</span><span class="o">.</span><span class="n">is_x_kind</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">is_c_kind</span>
-            <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">c</span><span class="o">=</span><span class="n">c</span><span class="p">)</span></div>
+
+        <span class="c1"># libxc notation employed in Abinit: a six-digit number in the form XXXCCC or CCCXXX</span>
+        <span class="c1"># ixc = str(ixc)</span>
+        <span class="c1"># assert len(ixc[1:]) == 6</span>
+        <span class="c1"># first, last = ixc[1:4], ixc[4:]</span>
+        <span class="n">ixc</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">ixc</span><span class="p">)</span>
+        <span class="n">first</span> <span class="o">=</span> <span class="n">ixc</span> <span class="o">//</span> <span class="mi">1000</span>
+        <span class="n">last</span> <span class="o">=</span> <span class="n">ixc</span> <span class="o">-</span> <span class="n">first</span> <span class="o">*</span> <span class="mi">1000</span>
+        <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">LibxcFunc</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">first</span><span class="p">)),</span> <span class="n">LibxcFunc</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">last</span><span class="p">))</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">x</span><span class="o">.</span><span class="n">is_x_kind</span><span class="p">:</span>
+            <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">c</span><span class="p">,</span> <span class="n">x</span>  <span class="c1"># Swap</span>
+        <span class="k">assert</span> <span class="n">x</span><span class="o">.</span><span class="n">is_x_kind</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">is_c_kind</span>
+        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">c</span><span class="o">=</span><span class="n">c</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="XcFunc.from_name"><a class="viewcode-back" href="../../../pymatgen.core.xcfunc.html#pymatgen.core.xcfunc.XcFunc.from_name">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_name</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
@@ -219,15 +218,9 @@ <h1>Source code for pymatgen.core.xcfunc</h1><div class="highlight"><pre>
             <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="p">(</span><span class="n">s</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;+&quot;</span><span class="p">))</span>
             <span class="n">x</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">LibxcFunc</span><span class="p">[</span><span class="n">x</span><span class="p">],</span> <span class="n">LibxcFunc</span><span class="p">[</span><span class="n">c</span><span class="p">]</span>
             <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">c</span><span class="o">=</span><span class="n">c</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># if typ is not None: raise ValueError(&quot;typ: `%s` but name: `%s`&quot; % (typ, name))</span>
-            <span class="n">xc</span> <span class="o">=</span> <span class="n">LibxcFunc</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">xc</span><span class="o">=</span><span class="n">xc</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">typ</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Cannot find name=</span><span class="si">%s</span><span class="s2"> in defined_aliases&quot;</span> <span class="o">%</span> <span class="n">name</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Cannot find type=</span><span class="si">%s</span><span class="s2">, name=</span><span class="si">%s</span><span class="s2"> in defined_aliases&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">typ</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span></div>
+        <span class="c1"># if typ is not None: raise ValueError(&quot;typ: `%s` but name: `%s`&quot; % (typ, name))</span>
+        <span class="n">xc</span> <span class="o">=</span> <span class="n">LibxcFunc</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">xc</span><span class="o">=</span><span class="n">xc</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="XcFunc.from_dict"><a class="viewcode-back" href="../../../pymatgen.core.xcfunc.html#pymatgen.core.xcfunc.XcFunc.from_dict">[docs]</a>    <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_dict</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
@@ -365,7 +358,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/bandstructure.html b/docs/_modules/pymatgen/electronic_structure/bandstructure.html
index d95a11e4ffa..405627c546f 100644
--- a/docs/_modules/pymatgen/electronic_structure/bandstructure.html
+++ b/docs/_modules/pymatgen/electronic_structure/bandstructure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1343,7 +1342,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/boltztrap.html b/docs/_modules/pymatgen/electronic_structure/boltztrap.html
index d74c00d8025..e5a42faa7d4 100644
--- a/docs/_modules/pymatgen/electronic_structure/boltztrap.html
+++ b/docs/_modules/pymatgen/electronic_structure/boltztrap.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -2468,7 +2467,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/boltztrap2.html b/docs/_modules/pymatgen/electronic_structure/boltztrap2.html
index da11630e945..205f40f54af 100644
--- a/docs/_modules/pymatgen/electronic_structure/boltztrap2.html
+++ b/docs/_modules/pymatgen/electronic_structure/boltztrap2.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -872,7 +871,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/cohp.html b/docs/_modules/pymatgen/electronic_structure/cohp.html
index 684111b05ee..868576b4596 100644
--- a/docs/_modules/pymatgen/electronic_structure/cohp.html
+++ b/docs/_modules/pymatgen/electronic_structure/cohp.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -49,12 +48,20 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">This module defines classes to represent crystal orbital Hamilton</span>
+<span class="sd">populations (COHP) and integrated COHP (ICOHP), but can also be used</span>
+<span class="sd">for crystal orbital overlap populations (COOP).</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
 <span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">sys</span>
 
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">from</span> <span class="nn">monty.json</span> <span class="k">import</span> <span class="n">MSONable</span>
+
 <span class="kn">from</span> <span class="nn">pymatgen.electronic_structure.core</span> <span class="k">import</span> <span class="n">Spin</span><span class="p">,</span> <span class="n">Orbital</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.sites</span> <span class="k">import</span> <span class="n">PeriodicSite</span>
 <span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span>
@@ -63,12 +70,6 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <span class="kn">from</span> <span class="nn">pymatgen.util.num</span> <span class="k">import</span> <span class="n">round_to_sigfigs</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.coord</span> <span class="k">import</span> <span class="n">get_linear_interpolated_value</span>
 
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">This module defines classes to represent crystal orbital Hamilton</span>
-<span class="sd">populations (COHP) and integrated COHP (ICOHP), but can also be used</span>
-<span class="sd">for crystal orbital overlap populations (COOP).</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Marco Esters, Janine George&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2017, The Materials Project&quot;</span>
 <span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.2&quot;</span>
@@ -80,20 +81,17 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <div class="viewcode-block" id="Cohp"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.Cohp">[docs]</a><span class="k">class</span> <span class="nc">Cohp</span><span class="p">(</span><span class="n">MSONable</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Basic COHP object.</span>
-
-<span class="sd">    Args/attributes:</span>
-<span class="sd">        are_coops: Indicates whether this object describes COHPs or COOPs.</span>
-
-<span class="sd">        efermi: Fermi energy.</span>
-
-<span class="sd">        energies: A sequence of energies.</span>
-
-<span class="sd">        cohp ({Spin: np.array}): representing the COHP for each spin.</span>
-
-<span class="sd">        icohp ({Spin: np.array}): representing the ICOHP for each spin.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">efermi</span><span class="p">,</span> <span class="n">energies</span><span class="p">,</span> <span class="n">cohp</span><span class="p">,</span> <span class="n">are_coops</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">icohp</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            are_coops: Indicates whether this object describes COHPs or COOPs.</span>
+<span class="sd">            efermi: Fermi energy.</span>
+<span class="sd">            energies: A sequence of energies.</span>
+<span class="sd">            cohp ({Spin: np.array}): representing the COHP for each spin.</span>
+<span class="sd">            icohp ({Spin: np.array}): representing the ICOHP for each spin.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">are_coops</span> <span class="o">=</span> <span class="n">are_coops</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">efermi</span> <span class="o">=</span> <span class="n">efermi</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">energies</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">energies</span><span class="p">)</span>
@@ -190,15 +188,14 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
         <span class="k">if</span> <span class="n">populations</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="n">spin</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">spin</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">populations</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">spin</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-                <span class="n">spin</span> <span class="o">=</span> <span class="n">Spin</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">spin</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="n">s</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;up&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;down&quot;</span><span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">}[</span><span class="n">spin</span><span class="o">.</span><span class="n">lower</span><span class="p">()]</span>
-                <span class="n">spin</span> <span class="o">=</span> <span class="n">Spin</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
-            <span class="k">return</span> <span class="p">{</span><span class="n">spin</span><span class="p">:</span> <span class="n">populations</span><span class="p">[</span><span class="n">spin</span><span class="p">]}</span></div>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">spin</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+            <span class="n">spin</span> <span class="o">=</span> <span class="n">Spin</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">spin</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+            <span class="n">s</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;up&quot;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;down&quot;</span><span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">}[</span><span class="n">spin</span><span class="o">.</span><span class="n">lower</span><span class="p">()]</span>
+            <span class="n">spin</span> <span class="o">=</span> <span class="n">Spin</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
+        <span class="k">return</span> <span class="p">{</span><span class="n">spin</span><span class="p">:</span> <span class="n">populations</span><span class="p">[</span><span class="n">spin</span><span class="p">]}</span></div>
 
 <div class="viewcode-block" id="Cohp.get_icohp"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.Cohp.get_icohp">[docs]</a>    <span class="k">def</span> <span class="nf">get_icohp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spin</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -241,13 +238,13 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
         <span class="k">if</span> <span class="n">populations</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="n">spin</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">spin</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">dict_to_return</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="k">for</span> <span class="n">spin</span><span class="p">,</span> <span class="n">cohpvalues</span> <span class="ow">in</span> <span class="n">populations</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">for</span> <span class="n">sp</span><span class="p">,</span> <span class="n">cohpvalues</span> <span class="ow">in</span> <span class="n">populations</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
                 <span class="k">if</span> <span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">cohpvalues</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">number_energies_below_efermi</span><span class="p">]))</span> <span class="o">&gt;</span> <span class="n">limit</span><span class="p">:</span>
-                    <span class="n">dict_to_return</span><span class="p">[</span><span class="n">spin</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+                    <span class="n">dict_to_return</span><span class="p">[</span><span class="n">sp</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
                 <span class="k">else</span><span class="p">:</span>
-                    <span class="n">dict_to_return</span><span class="p">[</span><span class="n">spin</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
+                    <span class="n">dict_to_return</span><span class="p">[</span><span class="n">sp</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">dict_to_return</span> <span class="o">=</span> <span class="p">{}</span>
             <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">spin</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
@@ -283,26 +280,6 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    A wrapper class that defines an average COHP, and individual COHPs.</span>
 
-<span class="sd">    Args:</span>
-<span class="sd">        structure: Structure assosciated with this COHP.</span>
-
-<span class="sd">        avg_cohp: The average cohp as a COHP object.</span>
-
-<span class="sd">        cohps: A dict of COHP objects for individual bonds of the form</span>
-<span class="sd">            {label: COHP}</span>
-
-<span class="sd">        bonds: A dict containing information on the bonds of the form</span>
-<span class="sd">            {label: {key: val}}. The key-val pair can be any information</span>
-<span class="sd">            the user wants to put in, but typically contains the sites,</span>
-<span class="sd">            the bond length, and the number of bonds. If nothing is</span>
-<span class="sd">            supplied, it will default to an empty dict.</span>
-
-<span class="sd">        are_coops: indicates whether the Cohp objects are COHPs or COOPs.</span>
-<span class="sd">            Defauls to False for COHPs.</span>
-
-<span class="sd">        orb_res_cohp: Orbital-resolved COHPs.</span>
-
-
 <span class="sd">    .. attribute: are_coops</span>
 
 <span class="sd">         Indicates whether the object is of COOPs or COHPs.</span>
@@ -334,6 +311,21 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">structure</span><span class="p">,</span> <span class="n">avg_cohp</span><span class="p">,</span> <span class="n">cohp_dict</span><span class="p">,</span> <span class="n">bonds</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                  <span class="n">are_coops</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">orb_res_cohp</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            structure: Structure assosciated with this COHP.</span>
+<span class="sd">            avg_cohp: The average cohp as a COHP object.</span>
+<span class="sd">            cohps: A dict of COHP objects for individual bonds of the form</span>
+<span class="sd">                {label: COHP}</span>
+<span class="sd">            bonds: A dict containing information on the bonds of the form</span>
+<span class="sd">                {label: {key: val}}. The key-val pair can be any information</span>
+<span class="sd">                the user wants to put in, but typically contains the sites,</span>
+<span class="sd">                the bond length, and the number of bonds. If nothing is</span>
+<span class="sd">                supplied, it will default to an empty dict.</span>
+<span class="sd">            are_coops: indicates whether the Cohp objects are COHPs or COOPs.</span>
+<span class="sd">                Defauls to False for COHPs.</span>
+<span class="sd">            orb_res_cohp: Orbital-resolved COHPs.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">avg_cohp</span><span class="o">.</span><span class="n">efermi</span><span class="p">,</span> <span class="n">avg_cohp</span><span class="o">.</span><span class="n">energies</span><span class="p">,</span> <span class="n">avg_cohp</span><span class="o">.</span><span class="n">cohp</span><span class="p">,</span>
                          <span class="n">are_coops</span><span class="o">=</span><span class="n">are_coops</span><span class="p">,</span> <span class="n">icohp</span><span class="o">=</span><span class="n">avg_cohp</span><span class="o">.</span><span class="n">icohp</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">structure</span> <span class="o">=</span> <span class="n">structure</span>
@@ -348,8 +340,7 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
     <span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">are_coops</span><span class="p">:</span>
             <span class="k">return</span> <span class="s2">&quot;Complete COOPs for &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">structure</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s2">&quot;Complete COHPs for &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">structure</span><span class="p">)</span>
+        <span class="k">return</span> <span class="s2">&quot;Complete COHPs for &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">structure</span><span class="p">)</span>
 
 <div class="viewcode-block" id="CompleteCohp.as_dict"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.CompleteCohp.as_dict">[docs]</a>    <span class="k">def</span> <span class="nf">as_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -419,15 +410,10 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
         <span class="k">if</span> <span class="n">label</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;average&quot;</span><span class="p">:</span>
             <span class="k">return</span> <span class="n">Cohp</span><span class="p">(</span><span class="n">efermi</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">efermi</span><span class="p">,</span> <span class="n">energies</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">energies</span><span class="p">,</span>
                         <span class="n">cohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">cohp</span><span class="p">,</span> <span class="n">are_coops</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">are_coops</span><span class="p">,</span> <span class="n">icohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">icohp</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">Cohp</span><span class="p">(</span><span class="n">efermi</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">efermi</span><span class="p">,</span> <span class="n">energies</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">energies</span><span class="p">,</span>
-                            <span class="n">cohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">all_cohps</span><span class="p">[</span><span class="n">label</span><span class="p">]</span><span class="o">.</span><span class="n">get_cohp</span><span class="p">(</span><span class="n">spin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">integrated</span><span class="o">=</span><span class="kc">False</span><span class="p">),</span>
-                            <span class="n">are_coops</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">are_coops</span><span class="p">,</span>
-                            <span class="n">icohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">all_cohps</span><span class="p">[</span><span class="n">label</span><span class="p">]</span><span class="o">.</span><span class="n">get_icohp</span><span class="p">(</span><span class="n">spin</span><span class="o">=</span><span class="kc">None</span><span class="p">))</span>
-
-            <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;The label does not exist&quot;</span><span class="p">)</span></div>
+        <span class="k">return</span> <span class="n">Cohp</span><span class="p">(</span><span class="n">efermi</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">efermi</span><span class="p">,</span> <span class="n">energies</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">energies</span><span class="p">,</span>
+                    <span class="n">cohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">all_cohps</span><span class="p">[</span><span class="n">label</span><span class="p">]</span><span class="o">.</span><span class="n">get_cohp</span><span class="p">(</span><span class="n">spin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">integrated</span><span class="o">=</span><span class="kc">False</span><span class="p">),</span>
+                    <span class="n">are_coops</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">are_coops</span><span class="p">,</span>
+                    <span class="n">icohp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">all_cohps</span><span class="p">[</span><span class="n">label</span><span class="p">]</span><span class="o">.</span><span class="n">get_icohp</span><span class="p">(</span><span class="n">spin</span><span class="o">=</span><span class="kc">None</span><span class="p">))</span></div>
 
 <div class="viewcode-block" id="CompleteCohp.get_summed_cohp_by_label_list"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.CompleteCohp.get_summed_cohp_by_label_list">[docs]</a>    <span class="k">def</span> <span class="nf">get_summed_cohp_by_label_list</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">label_list</span><span class="p">,</span> <span class="n">divisor</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -522,7 +508,7 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">orb_res_cohp</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">orbitals</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">orbitals</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">orbitals</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">)):</span>
             <span class="n">cohp_orbs</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;orbitals&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span>
                          <span class="bp">self</span><span class="o">.</span><span class="n">orb_res_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]</span><span class="o">.</span><span class="n">values</span><span class="p">()]</span>
             <span class="n">orbs</span> <span class="o">=</span> <span class="p">[]</span>
@@ -583,15 +569,11 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
             <span class="k">for</span> <span class="n">label</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">]:</span>
                 <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
                 <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">]:</span>
-                    <span class="n">cohp</span> <span class="o">=</span> <span class="p">{</span><span class="n">Spin</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">s</span><span class="p">)):</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-                        <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">][</span><span class="n">s</span><span class="p">],</span>
-                        <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-                        <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">]}</span>
+                    <span class="n">cohp</span> <span class="o">=</span> <span class="p">{</span><span class="n">Spin</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">s</span><span class="p">)):</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">][</span><span class="n">s</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+                            <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">]}</span>
                     <span class="k">try</span><span class="p">:</span>
-                        <span class="n">icohp</span> <span class="o">=</span> <span class="p">{</span><span class="n">Spin</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">s</span><span class="p">)):</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-                            <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">s</span><span class="p">],</span>
-                            <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-                            <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">]}</span>
+                        <span class="n">icohp</span> <span class="o">=</span> <span class="p">{</span><span class="n">Spin</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">s</span><span class="p">)):</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">s</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+                                 <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;orb_res_cohp&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">]}</span>
                     <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
                         <span class="n">icohp</span> <span class="o">=</span> <span class="kc">None</span>
                     <span class="n">orbitals</span> <span class="o">=</span> <span class="p">[</span><span class="nb">tuple</span><span class="p">((</span><span class="nb">int</span><span class="p">(</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">Orbital</span><span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">1</span><span class="p">]]))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span>
@@ -607,20 +589,18 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
                         <span class="p">[</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">]</span>
                          <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)}</span>
                     <span class="k">try</span><span class="p">:</span>
-                        <span class="n">cohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-                            <span class="p">[</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span>
-                             <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+                        <span class="n">cohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;COHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span>
+                                                           <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
                     <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
                         <span class="k">pass</span>
 
                 <span class="n">orb_res_icohp</span> <span class="o">=</span> <span class="kc">None</span> <span class="ow">in</span> <span class="p">[</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">]</span> <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]</span>
                 <span class="k">if</span> <span class="p">(</span><span class="n">label</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">]</span> <span class="ow">or</span> <span class="n">d</span><span class="p">[</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">label</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">orb_res_icohp</span><span class="p">:</span>
                     <span class="n">icohp</span> <span class="o">=</span> <span class="p">{</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">]</span>
-                             <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)}</span>
+                                                       <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)}</span>
                     <span class="k">try</span><span class="p">:</span>
-                        <span class="n">icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-                            <span class="p">[</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span>
-                             <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+                        <span class="n">icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">][</span><span class="n">orb</span><span class="p">][</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">][</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">]</span>
+                                                            <span class="k">for</span> <span class="n">orb</span> <span class="ow">in</span> <span class="n">orb_cohp</span><span class="p">[</span><span class="n">label</span><span class="p">]]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
                     <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
                         <span class="k">pass</span>
         <span class="k">else</span><span class="p">:</span>
@@ -733,7 +713,7 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
                     <span class="n">avg</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">average</span><span class="p">(</span><span class="n">rows</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
                     <span class="c1"># LMTO COHPs have 5 significant figures</span>
                     <span class="n">avg_data</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">spin</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">round_to_sigfigs</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
-                                        <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">avg</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)})</span>
+                                                        <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">avg</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)})</span>
             <span class="n">avg_cohp</span> <span class="o">=</span> <span class="n">Cohp</span><span class="p">(</span><span class="n">efermi</span><span class="p">,</span> <span class="n">energies</span><span class="p">,</span>
                             <span class="n">avg_data</span><span class="p">[</span><span class="s2">&quot;COHP&quot;</span><span class="p">],</span>
                             <span class="n">icohp</span><span class="o">=</span><span class="n">avg_data</span><span class="p">[</span><span class="s2">&quot;ICOHP&quot;</span><span class="p">])</span>
@@ -762,14 +742,6 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <div class="viewcode-block" id="IcohpValue"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.IcohpValue">[docs]</a><span class="k">class</span> <span class="nc">IcohpValue</span><span class="p">(</span><span class="n">MSONable</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Class to store information on an ICOHP or ICOOP value</span>
-<span class="sd">    Args:</span>
-<span class="sd">        label: label for the icohp</span>
-<span class="sd">        atom1: str of atom that is contributing to the bond</span>
-<span class="sd">        atom2: str of second atom that is contributing to the bond</span>
-<span class="sd">        length: float of bond lengths</span>
-<span class="sd">        translation: translation list, e.g. [0,0,0]</span>
-<span class="sd">        num: integer describing how often the bond exists</span>
-<span class="sd">        icohp: dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</span>
 
 <span class="sd">    .. attribute:: num_bonds</span>
 <span class="sd">            number of bonds used for the average cohp (relevant for Lobster versions &lt;3.0) (int)</span>
@@ -786,6 +758,16 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">label</span><span class="p">,</span> <span class="n">atom1</span><span class="p">,</span> <span class="n">atom2</span><span class="p">,</span> <span class="n">length</span><span class="p">,</span> <span class="n">translation</span><span class="p">,</span> <span class="n">num</span><span class="p">,</span> <span class="n">icohp</span><span class="p">,</span> <span class="n">are_coops</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            label: label for the icohp</span>
+<span class="sd">            atom1: str of atom that is contributing to the bond</span>
+<span class="sd">            atom2: str of second atom that is contributing to the bond</span>
+<span class="sd">            length: float of bond lengths</span>
+<span class="sd">            translation: translation list, e.g. [0,0,0]</span>
+<span class="sd">            num: integer describing how often the bond exists</span>
+<span class="sd">            icohp: dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_are_coops</span> <span class="o">=</span> <span class="n">are_coops</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_label</span> <span class="o">=</span> <span class="n">label</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span> <span class="o">=</span> <span class="n">atom1</span>
@@ -803,22 +785,17 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
         <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_are_coops</span><span class="p">:</span>
             <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_spin_polarized</span><span class="p">:</span>
-                <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOHP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin up) and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin down)&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOHP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin up)&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_spin_polarized</span><span class="p">:</span>
-                <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOOP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin up) and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin down)&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOOP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin up)&quot;</span><span class="p">)</span>
+                <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOHP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span>
+                        <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin up) and &quot;</span> <span class="o">+</span>
+                        <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin down)&quot;</span><span class="p">)</span>
+            <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOHP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span>
+                    <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; eV (Spin up)&quot;</span><span class="p">)</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_spin_polarized</span><span class="p">:</span>
+            <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOOP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span>
+                    <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin up) and &quot;</span> <span class="o">+</span>
+                    <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">down</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin down)&quot;</span><span class="p">)</span>
+        <span class="k">return</span> <span class="p">(</span><span class="s2">&quot;ICOOP &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_label</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; between &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; and &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)</span> <span class="o">+</span>
+                <span class="s2">&quot; (&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_translation</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;): &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_icohp</span><span class="p">[</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">])</span> <span class="o">+</span> <span class="s2">&quot; (Spin up)&quot;</span><span class="p">)</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">num_bonds</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -887,18 +864,6 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Class to store IcohpValues</span>
 
-<span class="sd">    Args:</span>
-<span class="sd">        is_spin_polarized: Boolean to indicate if the Lobster calculation was done spin polarized or not Boolean to</span>
-<span class="sd">            indicate if the Lobster calculation was done spin polarized or not</span>
-<span class="sd">        are_coops: Boolean to indicate whether ICOHPs or ICOOPs are stored</span>
-<span class="sd">        list_labels: list of labels for ICOHP/ICOOP values</span>
-<span class="sd">        list_atom1: list of str of atomnames e.g. &quot;O1&quot;</span>
-<span class="sd">        list_atom2: list of str of atomnames e.g. &quot;O1&quot;</span>
-<span class="sd">        list_length: list of lengths of corresponding bonds in Angstrom</span>
-<span class="sd">        list_translation: list of translation list, e.g. [0,0,0]</span>
-<span class="sd">        list_num: list of equivalent bonds, usually 1 starting from Lobster 3.0.0</span>
-<span class="sd">        list_icohp: list of dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</span>
-
 <span class="sd">    .. attribute:: are_coops</span>
 <span class="sd">        Boolean to indicate whether ICOHPs or ICOOPs are stored</span>
 
@@ -909,6 +874,19 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">list_labels</span><span class="p">,</span> <span class="n">list_atom1</span><span class="p">,</span> <span class="n">list_atom2</span><span class="p">,</span> <span class="n">list_length</span><span class="p">,</span>
                  <span class="n">list_translation</span><span class="p">,</span> <span class="n">list_num</span><span class="p">,</span> <span class="n">list_icohp</span><span class="p">,</span> <span class="n">is_spin_polarized</span><span class="p">,</span> <span class="n">are_coops</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            is_spin_polarized: Boolean to indicate if the Lobster calculation was done spin polarized or not Boolean to</span>
+<span class="sd">                indicate if the Lobster calculation was done spin polarized or not</span>
+<span class="sd">            are_coops: Boolean to indicate whether ICOHPs or ICOOPs are stored</span>
+<span class="sd">            list_labels: list of labels for ICOHP/ICOOP values</span>
+<span class="sd">            list_atom1: list of str of atomnames e.g. &quot;O1&quot;</span>
+<span class="sd">            list_atom2: list of str of atomnames e.g. &quot;O1&quot;</span>
+<span class="sd">            list_length: list of lengths of corresponding bonds in Angstrom</span>
+<span class="sd">            list_translation: list of translation list, e.g. [0,0,0]</span>
+<span class="sd">            list_num: list of equivalent bonds, usually 1 starting from Lobster 3.0.0</span>
+<span class="sd">            list_icohp: list of dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_are_coops</span> <span class="o">=</span> <span class="n">are_coops</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_icohplist</span> <span class="o">=</span> <span class="p">{}</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_is_spin_polarized</span> <span class="o">=</span> <span class="n">is_spin_polarized</span>
@@ -948,10 +926,8 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
         <span class="k">if</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">_is_spin_polarized</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">summed_spin_channels</span><span class="p">:</span>
                 <span class="k">return</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">summed_icohp</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">icohpvalue</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">icohpvalue</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span></div>
+            <span class="k">return</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">icohpvalue</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">icohp_here</span><span class="o">.</span><span class="n">icohpvalue</span><span class="p">(</span><span class="n">spin</span><span class="p">)</span></div>
 
 <div class="viewcode-block" id="IcohpCollection.get_summed_icohp_by_label_list"><a class="viewcode-back" href="../../../pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.IcohpCollection.get_summed_icohp_by_label_list">[docs]</a>    <span class="k">def</span> <span class="nf">get_summed_icohp_by_label_list</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">label_list</span><span class="p">,</span> <span class="n">divisor</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">summed_spin_channels</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">spin</span><span class="o">=</span><span class="n">Spin</span><span class="o">.</span><span class="n">up</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
@@ -1018,7 +994,7 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
         <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_icohplist</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="n">atomnumber1</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;(\d+)&#39;</span><span class="p">,</span> <span class="n">value</span><span class="o">.</span><span class="n">_atom1</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span>
             <span class="n">atomnumber2</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;(\d+)&#39;</span><span class="p">,</span> <span class="n">value</span><span class="o">.</span><span class="n">_atom2</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span>
-            <span class="k">if</span> <span class="n">site</span> <span class="o">==</span> <span class="n">atomnumber1</span> <span class="ow">or</span> <span class="n">site</span> <span class="o">==</span> <span class="n">atomnumber2</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">site</span> <span class="ow">in</span> <span class="p">(</span><span class="n">atomnumber1</span><span class="p">,</span> <span class="n">atomnumber2</span><span class="p">):</span>
                 <span class="c1"># manipulate order of atoms so that searched one is always atom1</span>
                 <span class="k">if</span> <span class="n">site</span> <span class="o">==</span> <span class="n">atomnumber2</span><span class="p">:</span>
                     <span class="n">save</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">_atom1</span>
@@ -1089,10 +1065,16 @@ <h1>Source code for pymatgen.electronic_structure.cohp</h1><div class="highlight
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">is_spin_polarized</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: Whether it is spin polarized.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_is_spin_polarized</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">are_coops</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: Whether this is coops.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_are_coops</span></div>
 </pre></div>
 
@@ -1132,7 +1114,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/core.html b/docs/_modules/pymatgen/electronic_structure/core.html
index 7c379ff9cf2..f670ec1005d 100644
--- a/docs/_modules/pymatgen/electronic_structure/core.html
+++ b/docs/_modules/pymatgen/electronic_structure/core.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -574,7 +573,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/dos.html b/docs/_modules/pymatgen/electronic_structure/dos.html
index a2556bcd65b..c790d89d799 100644
--- a/docs/_modules/pymatgen/electronic_structure/dos.html
+++ b/docs/_modules/pymatgen/electronic_structure/dos.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1135,7 +1134,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/electronic_structure/plotter.html b/docs/_modules/pymatgen/electronic_structure/plotter.html
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/entries/compatibility.html b/docs/_modules/pymatgen/entries/compatibility.html
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@@ -756,7 +755,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/entries/computed_entries.html b/docs/_modules/pymatgen/entries/computed_entries.html
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@@ -315,7 +314,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/entries/entry_tools.html b/docs/_modules/pymatgen/entries/entry_tools.html
index 7cb239d238e..f656b8722d1 100644
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@@ -382,7 +381,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/entries/exp_entries.html b/docs/_modules/pymatgen/entries/exp_entries.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/ext/cod.html b/docs/_modules/pymatgen/ext/cod.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/ext/crystalsai.html b/docs/_modules/pymatgen/ext/crystalsai.html
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@@ -196,7 +195,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/ext/jhu.html b/docs/_modules/pymatgen/ext/jhu.html
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@@ -173,7 +172,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/ext/matproj.html b/docs/_modules/pymatgen/ext/matproj.html
index e729c22b233..06535722ded 100644
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@@ -1472,7 +1471,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/abiinspect.html b/docs/_modules/pymatgen/io/abinit/abiinspect.html
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@@ -820,7 +819,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/abiobjects.html b/docs/_modules/pymatgen/io/abinit/abiobjects.html
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@@ -1572,7 +1571,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/abitimer.html b/docs/_modules/pymatgen/io/abinit/abitimer.html
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@@ -965,7 +964,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/calculations.html b/docs/_modules/pymatgen/io/abinit/calculations.html
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@@ -241,7 +240,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/db.html b/docs/_modules/pymatgen/io/abinit/db.html
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@@ -250,7 +249,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/events.html b/docs/_modules/pymatgen/io/abinit/events.html
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@@ -969,7 +968,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/flows.html b/docs/_modules/pymatgen/io/abinit/flows.html
index 1004df99406..b6bdf9c253e 100644
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@@ -3195,7 +3194,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/helpers.html b/docs/_modules/pymatgen/io/abinit/helpers.html
index 369136ba879..b53e3d206d6 100644
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@@ -285,7 +284,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/launcher.html b/docs/_modules/pymatgen/io/abinit/launcher.html
index 20cb2642387..af864209dec 100644
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/netcdf.html b/docs/_modules/pymatgen/io/abinit/netcdf.html
index 2458c827f6e..11b4a1cf396 100644
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     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -558,7 +557,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/nodes.html b/docs/_modules/pymatgen/io/abinit/nodes.html
index fff5be429ff..ec35c1601a1 100644
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@@ -1382,7 +1381,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/pseudos.html b/docs/_modules/pymatgen/io/abinit/pseudos.html
index 9f778dacb3f..3e25a06606d 100644
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-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -1962,7 +1961,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/qadapters.html b/docs/_modules/pymatgen/io/abinit/qadapters.html
index eb014310c17..ab88bf2490b 100644
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@@ -2211,7 +2210,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/qjobs.html b/docs/_modules/pymatgen/io/abinit/qjobs.html
index 05726fe53bb..24b8cee8c06 100644
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@@ -551,7 +550,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/qutils.html b/docs/_modules/pymatgen/io/abinit/qutils.html
index 649e4d75240..06c355a7c44 100644
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@@ -218,7 +217,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/scheduler_error_handlers.html b/docs/_modules/pymatgen/io/abinit/scheduler_error_handlers.html
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     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -173,7 +172,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/scheduler_error_parsers.html b/docs/_modules/pymatgen/io/abinit/scheduler_error_parsers.html
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -513,7 +512,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/tasks.html b/docs/_modules/pymatgen/io/abinit/tasks.html
index d276d44a39e..7f471bbd2f3 100644
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@@ -13,7 +13,6 @@
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -4804,7 +4803,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/utils.html b/docs/_modules/pymatgen/io/abinit/utils.html
index 0d89eee410b..5c532d3b90c 100644
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@@ -13,7 +13,6 @@
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -1095,7 +1094,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/works.html b/docs/_modules/pymatgen/io/abinit/works.html
index 66a1449475e..e5381715ea8 100644
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@@ -13,7 +13,6 @@
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -2019,7 +2018,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/abinit/wrappers.html b/docs/_modules/pymatgen/io/abinit/wrappers.html
index 9d237db9e81..b117417d90d 100644
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     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -481,7 +480,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/adf.html b/docs/_modules/pymatgen/io/adf.html
index bfc590e1aba..f1101eb036a 100644
--- a/docs/_modules/pymatgen/io/adf.html
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     <link rel="index" title="Index" href="../../../genindex.html" />
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@@ -1050,7 +1049,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/aiida.html b/docs/_modules/pymatgen/io/aiida.html
index f239da91c1b..bb2d9ea9d3c 100644
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@@ -13,7 +13,6 @@
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     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -168,7 +167,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/ase.html b/docs/_modules/pymatgen/io/ase.html
index ba4c9caaa63..adbc351bbab 100644
--- a/docs/_modules/pymatgen/io/ase.html
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@@ -154,7 +153,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/atat.html b/docs/_modules/pymatgen/io/atat.html
index ebba2bc3466..d916a302bb1 100644
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@@ -211,7 +210,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/babel.html b/docs/_modules/pymatgen/io/babel.html
index 75ce123e937..52ff8631afe 100644
--- a/docs/_modules/pymatgen/io/babel.html
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@@ -436,7 +435,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/cif.html b/docs/_modules/pymatgen/io/cif.html
index 89b76dbd6ec..eb2151069d8 100644
--- a/docs/_modules/pymatgen/io/cif.html
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -680,7 +679,7 @@ <h1>Source code for pymatgen.io.cif</h1><div class="highlight"><pre>
             <span class="n">angles</span> <span class="o">=</span> <span class="p">[</span><span class="n">str2float</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">&quot;_cell_angle_&quot;</span> <span class="o">+</span> <span class="n">i</span><span class="p">])</span>
                       <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">angle_strings</span><span class="p">]</span>
             <span class="k">if</span> <span class="ow">not</span> <span class="n">lattice_type</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span><span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span><span class="p">)</span>
+                <span class="k">return</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="n">lengths</span><span class="p">,</span> <span class="o">*</span><span class="n">angles</span><span class="p">)</span>
 
             <span class="k">else</span><span class="p">:</span>
                 <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Lattice</span><span class="p">,</span> <span class="n">lattice_type</span><span class="p">)(</span><span class="o">*</span><span class="p">(</span><span class="n">lengths</span> <span class="o">+</span> <span class="n">angles</span><span class="p">))</span>
@@ -1489,7 +1488,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/cssr.html b/docs/_modules/pymatgen/io/cssr.html
index 53ad862f88c..931bcf80ac7 100644
--- a/docs/_modules/pymatgen/io/cssr.html
+++ b/docs/_modules/pymatgen/io/cssr.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -49,16 +48,16 @@ <h1>Source code for pymatgen.io.cssr</h1><div class="highlight"><pre>
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
-<span class="kn">import</span> <span class="nn">re</span>
-
-<span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
-<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
-<span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span>
 
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">This module provides input and output from the CSSR file format.</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
+<span class="kn">import</span> <span class="nn">re</span>
+
+<span class="kn">from</span> <span class="nn">monty.io</span> <span class="k">import</span> <span class="n">zopen</span>
+<span class="kn">from</span> <span class="nn">pymatgen.core.lattice</span> <span class="k">import</span> <span class="n">Lattice</span>
+<span class="kn">from</span> <span class="nn">pymatgen.core.structure</span> <span class="k">import</span> <span class="n">Structure</span>
 
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2012, The Materials Project&quot;</span>
@@ -72,12 +71,13 @@ <h1>Source code for pymatgen.io.cssr</h1><div class="highlight"><pre>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Basic object for working with Cssr file. Right now, only conversion from</span>
 <span class="sd">    a Structure to a Cssr file is supported.</span>
-
-<span class="sd">    Args:</span>
-<span class="sd">        structure (Structure/IStructure): A structure to create the Cssr object.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">structure</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            structure (Structure/IStructure): A structure to create the Cssr object.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">structure</span><span class="o">.</span><span class="n">is_ordered</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Cssr file can only be constructed from ordered &quot;</span>
                              <span class="s2">&quot;structure&quot;</span><span class="p">)</span>
@@ -121,7 +121,7 @@ <h1>Source code for pymatgen.io.cssr</h1><div class="highlight"><pre>
         <span class="n">lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">float</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">toks</span><span class="p">]</span>
         <span class="n">toks</span> <span class="o">=</span> <span class="n">lines</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
         <span class="n">angles</span> <span class="o">=</span> <span class="p">[</span><span class="nb">float</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">toks</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">3</span><span class="p">]]</span>
-        <span class="n">latt</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span><span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span><span class="p">)</span>
+        <span class="n">latt</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="n">lengths</span><span class="p">,</span> <span class="o">*</span><span class="n">angles</span><span class="p">)</span>
         <span class="n">sp</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">coords</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="k">for</span> <span class="n">l</span> <span class="ow">in</span> <span class="n">lines</span><span class="p">[</span><span class="mi">4</span><span class="p">:]:</span>
@@ -184,7 +184,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/exciting/inputs.html b/docs/_modules/pymatgen/io/exciting/inputs.html
index 82a63f3e44c..30f45f6b81d 100644
--- a/docs/_modules/pymatgen/io/exciting/inputs.html
+++ b/docs/_modules/pymatgen/io/exciting/inputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -405,7 +404,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/feff/inputs.html b/docs/_modules/pymatgen/io/feff/inputs.html
index 34c20b63e04..fdcda994b72 100644
--- a/docs/_modules/pymatgen/io/feff/inputs.html
+++ b/docs/_modules/pymatgen/io/feff/inputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -49,6 +48,13 @@ <h1>Source code for pymatgen.io.feff.inputs</h1><div class="highlight"><pre>
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">This module defines classes for reading/manipulating/writing the main sections</span>
+<span class="sd">of FEFF input file(feff.inp), namely HEADER, ATOMS, POTENTIAL and the program</span>
+<span class="sd">control tags.</span>
+
+<span class="sd">XANES and EXAFS input files, are available, for non-spin case at this time.</span>
+<span class="sd">&quot;&quot;&quot;</span>
 
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
@@ -67,15 +73,6 @@ <h1>Source code for pymatgen.io.feff.inputs</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">pymatgen.util.io_utils</span> <span class="k">import</span> <span class="n">clean_lines</span>
 <span class="kn">from</span> <span class="nn">pymatgen.util.string</span> <span class="k">import</span> <span class="n">str_delimited</span>
 
-
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">This module defines classes for reading/manipulating/writing the main sections</span>
-<span class="sd">of FEFF input file(feff.inp), namely HEADER, ATOMS, POTENTIAL and the program</span>
-<span class="sd">control tags.</span>
-
-<span class="sd">XANES and EXAFS input files, are available, for non-spin case at this time.</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Alan Dozier, Kiran Mathew&quot;</span>
 <span class="n">__credits__</span> <span class="o">=</span> <span class="s2">&quot;Anubhav Jain, Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2011, The Materials Project&quot;</span>
@@ -126,15 +123,16 @@ <h1>Source code for pymatgen.io.feff.inputs</h1><div class="highlight"><pre>
 <span class="sd">        * 2 Co     0.333333     0.666667     0.996324</span>
 <span class="sd">        * 3 O     0.666666     0.333332     0.878676</span>
 <span class="sd">        * 4 O     0.333333     0.666667     0.378675</span>
-
-<span class="sd">    Args:</span>
-<span class="sd">        struct: Structure object, See pymatgen.core.structure.Structure.</span>
-<span class="sd">        source: User supplied identifier, i.e. for Materials Project this</span>
-<span class="sd">            would be the material ID number</span>
-<span class="sd">        comment: Comment for first header line</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">struct</span><span class="p">,</span> <span class="n">source</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">comment</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            struct: Structure object, See pymatgen.core.structure.Structure.</span>
+<span class="sd">            source: User supplied identifier, i.e. for Materials Project this</span>
+<span class="sd">                would be the material ID number</span>
+<span class="sd">            comment: Comment for first header line</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="n">struct</span><span class="o">.</span><span class="n">is_ordered</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">struct</span> <span class="o">=</span> <span class="n">struct</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">source</span> <span class="o">=</span> <span class="n">source</span>
@@ -271,7 +269,7 @@ <h1>Source code for pymatgen.io.feff.inputs</h1><div class="highlight"><pre>
             <span class="n">gamma</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">basis_ang</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
             <span class="n">angles</span> <span class="o">=</span> <span class="p">[</span><span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span><span class="p">]</span>
 
-            <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span><span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span><span class="p">)</span>
+            <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="n">lengths</span><span class="p">,</span> <span class="o">*</span><span class="n">angles</span><span class="p">)</span>
 
             <span class="n">natoms</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">lines</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;:&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
 
@@ -937,13 +935,7 @@ <h1>Source code for pymatgen.io.feff.inputs</h1><div class="highlight"><pre>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Exception class for Structure.</span>
 <span class="sd">    Raised when the structure has problems, e.g., atoms that are too close.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">msg</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">msg</span> <span class="o">=</span> <span class="n">msg</span>
-
-    <span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s2">&quot;FeffParserError : &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">msg</span></div>
+<span class="sd">    &quot;&quot;&quot;</span></div>
 
 
 <div class="viewcode-block" id="get_atom_map"><a class="viewcode-back" href="../../../../pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.get_atom_map">[docs]</a><span class="k">def</span> <span class="nf">get_atom_map</span><span class="p">(</span><span class="n">structure</span><span class="p">):</span>
@@ -1021,7 +1013,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/feff/outputs.html b/docs/_modules/pymatgen/io/feff/outputs.html
index 89a50dac126..89a35a6f47d 100644
--- a/docs/_modules/pymatgen/io/feff/outputs.html
+++ b/docs/_modules/pymatgen/io/feff/outputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -537,7 +536,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/feff/sets.html b/docs/_modules/pymatgen/io/feff/sets.html
index 230e821830a..eac022532de 100644
--- a/docs/_modules/pymatgen/io/feff/sets.html
+++ b/docs/_modules/pymatgen/io/feff/sets.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -561,7 +560,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/fiesta.html b/docs/_modules/pymatgen/io/fiesta.html
index 3b5dcacb656..3ef003b59a4 100644
--- a/docs/_modules/pymatgen/io/fiesta.html
+++ b/docs/_modules/pymatgen/io/fiesta.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -942,7 +941,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/gaussian.html b/docs/_modules/pymatgen/io/gaussian.html
index 50cbd05f89c..d283aceef70 100644
--- a/docs/_modules/pymatgen/io/gaussian.html
+++ b/docs/_modules/pymatgen/io/gaussian.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/lammps/data.html b/docs/_modules/pymatgen/io/lammps/data.html
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@@ -1497,7 +1496,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/lammps/inputs.html b/docs/_modules/pymatgen/io/lammps/inputs.html
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@@ -282,7 +281,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/lammps/outputs.html b/docs/_modules/pymatgen/io/lammps/outputs.html
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@@ -272,7 +271,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/lammps/utils.html b/docs/_modules/pymatgen/io/lammps/utils.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/_modules/pymatgen/io/lmto.html b/docs/_modules/pymatgen/io/lmto.html
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/_modules/pymatgen/io/lobster.html b/docs/_modules/pymatgen/io/lobster.html
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@@ -1936,7 +1935,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/nwchem.html b/docs/_modules/pymatgen/io/nwchem.html
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@@ -1009,7 +1008,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/io/phonopy.html b/docs/_modules/pymatgen/io/phonopy.html
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@@ -366,7 +365,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/prismatic.html b/docs/_modules/pymatgen/io/prismatic.html
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@@ -131,7 +130,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/pwscf.html b/docs/_modules/pymatgen/io/pwscf.html
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@@ -553,7 +552,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/qchem/inputs.html b/docs/_modules/pymatgen/io/qchem/inputs.html
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@@ -516,7 +515,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/qchem/outputs.html b/docs/_modules/pymatgen/io/qchem/outputs.html
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@@ -1290,7 +1289,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/qchem/sets.html b/docs/_modules/pymatgen/io/qchem/sets.html
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@@ -334,7 +333,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/qchem/utils.html b/docs/_modules/pymatgen/io/qchem/utils.html
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@@ -237,7 +236,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/shengbte.html b/docs/_modules/pymatgen/io/shengbte.html
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@@ -235,7 +234,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/io/vasp/inputs.html b/docs/_modules/pymatgen/io/vasp/inputs.html
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@@ -2163,7 +2162,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/vasp/outputs.html b/docs/_modules/pymatgen/io/vasp/outputs.html
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@@ -4765,7 +4764,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/_modules/pymatgen/io/vasp/sets.html b/docs/_modules/pymatgen/io/vasp/sets.html
index f0ec88d6102..22c3638433f 100644
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+++ b/docs/_modules/pymatgen/io/vasp/sets.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
  
@@ -2302,7 +2301,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/xcrysden.html b/docs/_modules/pymatgen/io/xcrysden.html
index 93a8f4f5199..4f8c1ea3d7a 100644
--- a/docs/_modules/pymatgen/io/xcrysden.html
+++ b/docs/_modules/pymatgen/io/xcrysden.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -182,7 +181,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/xr.html b/docs/_modules/pymatgen/io/xr.html
index 62884f982e1..2583bb6fd93 100644
--- a/docs/_modules/pymatgen/io/xr.html
+++ b/docs/_modules/pymatgen/io/xr.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -242,7 +241,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/xyz.html b/docs/_modules/pymatgen/io/xyz.html
index 4d6beef06dd..7b0c0676b3f 100644
--- a/docs/_modules/pymatgen/io/xyz.html
+++ b/docs/_modules/pymatgen/io/xyz.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -221,7 +220,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/io/zeopp.html b/docs/_modules/pymatgen/io/zeopp.html
index db404e094f5..71c06eb6ac5 100644
--- a/docs/_modules/pymatgen/io/zeopp.html
+++ b/docs/_modules/pymatgen/io/zeopp.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -187,7 +186,7 @@ <h1>Source code for pymatgen.io.zeopp</h1><div class="highlight"><pre>
         <span class="n">lengths</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">a</span><span class="p">)</span>
         <span class="n">alpha</span> <span class="o">=</span> <span class="n">angles</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">)</span>
         <span class="n">angles</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">alpha</span><span class="p">)</span>
-        <span class="n">latt</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span><span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span><span class="p">)</span>
+        <span class="n">latt</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="o">*</span><span class="n">lengths</span><span class="p">,</span> <span class="o">*</span><span class="n">angles</span><span class="p">)</span>
         <span class="n">sp</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">coords</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">chrg</span> <span class="o">=</span> <span class="p">[]</span>
@@ -346,8 +345,7 @@ <h1>Source code for pymatgen.io.zeopp</h1><div class="highlight"><pre>
         <span class="n">coords</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">coords</span><span class="p">))</span>
         <span class="n">prop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="p">[</span><span class="s1">&#39;voronoi_radius&#39;</span><span class="p">])</span>
 
-    <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-        <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">abc</span><span class="p">,</span> <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">angles</span><span class="p">)</span>
+    <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">parameters</span><span class="p">)</span>
     <span class="n">vor_node_struct</span> <span class="o">=</span> <span class="n">Structure</span><span class="p">(</span>
         <span class="n">lattice</span><span class="p">,</span> <span class="n">species</span><span class="p">,</span> <span class="n">coords</span><span class="p">,</span> <span class="n">coords_are_cartesian</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
         <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">site_properties</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;voronoi_radius&quot;</span><span class="p">:</span> <span class="n">prop</span><span class="p">})</span>
@@ -424,8 +422,7 @@ <h1>Source code for pymatgen.io.zeopp</h1><div class="highlight"><pre>
         <span class="n">coords</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">coords</span><span class="p">))</span>
         <span class="n">prop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">site</span><span class="o">.</span><span class="n">properties</span><span class="p">[</span><span class="s1">&#39;voronoi_radius&#39;</span><span class="p">])</span>
 
-    <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_lengths_and_angles</span><span class="p">(</span>
-        <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">abc</span><span class="p">,</span> <span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">angles</span><span class="p">)</span>
+    <span class="n">lattice</span> <span class="o">=</span> <span class="n">Lattice</span><span class="o">.</span><span class="n">from_parameters</span><span class="p">(</span><span class="n">structure</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">parameters</span><span class="p">)</span>
     <span class="n">vor_node_struct</span> <span class="o">=</span> <span class="n">Structure</span><span class="p">(</span>
         <span class="n">lattice</span><span class="p">,</span> <span class="n">species</span><span class="p">,</span> <span class="n">coords</span><span class="p">,</span> <span class="n">coords_are_cartesian</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
         <span class="n">to_unit_cell</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">site_properties</span><span class="o">=</span><span class="p">{</span><span class="s2">&quot;voronoi_radius&quot;</span><span class="p">:</span> <span class="n">prop</span><span class="p">})</span>
@@ -586,7 +583,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/optimization/linear_assignment_numpy.html b/docs/_modules/pymatgen/optimization/linear_assignment_numpy.html
index e40a8b09a09..3c8f1360f6a 100644
--- a/docs/_modules/pymatgen/optimization/linear_assignment_numpy.html
+++ b/docs/_modules/pymatgen/optimization/linear_assignment_numpy.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -326,7 +325,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/phonon/bandstructure.html b/docs/_modules/pymatgen/phonon/bandstructure.html
index fd1cf6fafea..90f4636b305 100644
--- a/docs/_modules/pymatgen/phonon/bandstructure.html
+++ b/docs/_modules/pymatgen/phonon/bandstructure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -654,7 +653,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/phonon/dos.html b/docs/_modules/pymatgen/phonon/dos.html
index 9e66b98c0f6..499dc456535 100644
--- a/docs/_modules/pymatgen/phonon/dos.html
+++ b/docs/_modules/pymatgen/phonon/dos.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -477,7 +476,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/phonon/plotter.html b/docs/_modules/pymatgen/phonon/plotter.html
index e0c2eb7d64b..1f8684dee80 100644
--- a/docs/_modules/pymatgen/phonon/plotter.html
+++ b/docs/_modules/pymatgen/phonon/plotter.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -752,7 +751,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/analyzer.html b/docs/_modules/pymatgen/symmetry/analyzer.html
index 3d19ef98cca..95bfb79ce75 100644
--- a/docs/_modules/pymatgen/symmetry/analyzer.html
+++ b/docs/_modules/pymatgen/symmetry/analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -207,6 +206,7 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
 
         <span class="k">def</span> <span class="nf">f</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
             <span class="k">return</span> <span class="n">i</span> <span class="o">&lt;=</span> <span class="n">n</span> <span class="o">&lt;=</span> <span class="n">j</span>
+
         <span class="n">cs</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;triclinic&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="s2">&quot;monoclinic&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">15</span><span class="p">),</span>
               <span class="s2">&quot;orthorhombic&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">16</span><span class="p">,</span> <span class="mi">74</span><span class="p">),</span> <span class="s2">&quot;tetragonal&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">75</span><span class="p">,</span> <span class="mi">142</span><span class="p">),</span>
               <span class="s2">&quot;trigonal&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">143</span><span class="p">,</span> <span class="mi">167</span><span class="p">),</span> <span class="s2">&quot;hexagonal&quot;</span><span class="p">:</span> <span class="p">(</span><span class="mi">168</span><span class="p">,</span> <span class="mi">194</span><span class="p">),</span>
@@ -429,7 +429,7 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">lattice</span> <span class="o">==</span> <span class="s2">&quot;rhombohedral&quot;</span><span class="p">:</span>
             <span class="c1"># check if the conventional representation is hexagonal or</span>
             <span class="c1"># rhombohedral</span>
-            <span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span> <span class="o">=</span> <span class="n">conv</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+            <span class="n">lengths</span> <span class="o">=</span> <span class="n">conv</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
             <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">lengths</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mf">0.0001</span><span class="p">:</span>
                 <span class="n">transf</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">eye</span>
             <span class="k">else</span><span class="p">:</span>
@@ -487,7 +487,8 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="n">lattice</span> <span class="o">==</span> <span class="s2">&quot;rhombohedral&quot;</span><span class="p">:</span>
             <span class="n">prim</span> <span class="o">=</span> <span class="n">Structure</span><span class="o">.</span><span class="n">from_sites</span><span class="p">(</span><span class="n">new_sites</span><span class="p">)</span>
-            <span class="n">lengths</span><span class="p">,</span> <span class="n">angles</span> <span class="o">=</span> <span class="n">prim</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+            <span class="n">lengths</span> <span class="o">=</span> <span class="n">prim</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+            <span class="n">angles</span> <span class="o">=</span> <span class="n">prim</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
             <span class="n">a</span> <span class="o">=</span> <span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
             <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
             <span class="n">new_matrix</span> <span class="o">=</span> <span class="p">[</span>
@@ -610,31 +611,31 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
                 <span class="n">new_matrix</span> <span class="o">=</span> <span class="kc">None</span>
                 <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="n">itertools</span><span class="o">.</span><span class="n">permutations</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">)),</span> <span class="mi">2</span><span class="p">):</span>
                     <span class="n">m</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">matrix</span>
-                    <span class="n">landang</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
-                        <span class="p">[</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">]])</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                    <span class="k">if</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">90</span><span class="p">:</span>
+                    <span class="n">latt2</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">([</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">]])</span>
+                    <span class="n">lengths</span> <span class="o">=</span> <span class="n">latt2</span><span class="o">.</span><span class="n">lengths</span>
+                    <span class="n">angles</span> <span class="o">=</span> <span class="n">latt2</span><span class="o">.</span><span class="n">angles</span>
+                    <span class="k">if</span> <span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">90</span><span class="p">:</span>
                         <span class="c1"># if the angle is &gt; 90 we invert a and b to get</span>
                         <span class="c1"># an angle &lt; 90</span>
-                        <span class="n">landang</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
-                            <span class="p">[</span><span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">]])</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
+                            <span class="p">[</span><span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">]])</span><span class="o">.</span><span class="n">parameters</span>
                         <span class="n">transf</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">2</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
-                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
+                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">alpha</span> <span class="o">/</span> <span class="mi">180</span>
                         <span class="n">new_matrix</span> <span class="o">=</span> <span class="p">[[</span><span class="n">a</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">),</span> <span class="n">c</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)]]</span>
                         <span class="k">continue</span>
 
-                    <span class="k">elif</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">90</span><span class="p">:</span>
+                    <span class="k">elif</span> <span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">90</span><span class="p">:</span>
                         <span class="n">transf</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">2</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
-                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
+                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">lengths</span>
+                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
                         <span class="n">new_matrix</span> <span class="o">=</span> <span class="p">[[</span><span class="n">a</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">),</span> <span class="n">c</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)]]</span>
@@ -656,28 +657,26 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
                 <span class="n">new_matrix</span> <span class="o">=</span> <span class="kc">None</span>
                 <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="n">itertools</span><span class="o">.</span><span class="n">permutations</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">)),</span> <span class="mi">3</span><span class="p">):</span>
                     <span class="n">m</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">matrix</span>
-                    <span class="n">landang</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
-                        <span class="p">[</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]])</span><span class="o">.</span><span class="n">lengths_and_angles</span>
-                    <span class="k">if</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]:</span>
-                        <span class="n">landang</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
-                            <span class="p">[</span><span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]])</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+                    <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
+                        <span class="p">[</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]])</span><span class="o">.</span><span class="n">parameters</span>
+                    <span class="k">if</span> <span class="n">alpha</span> <span class="o">&gt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">b</span> <span class="o">&lt;</span> <span class="n">c</span><span class="p">:</span>
+                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="n">Lattice</span><span class="p">(</span>
+                            <span class="p">[</span><span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="o">-</span><span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]],</span> <span class="n">m</span><span class="p">[</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]])</span><span class="o">.</span><span class="n">parameters</span>
                         <span class="n">transf</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">2</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
-                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
+                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">alpha</span> <span class="o">/</span> <span class="mi">180</span>
                         <span class="n">new_matrix</span> <span class="o">=</span> <span class="p">[[</span><span class="n">a</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">),</span> <span class="n">c</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)]]</span>
                         <span class="k">continue</span>
-                    <span class="k">elif</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]:</span>
+                    <span class="k">elif</span> <span class="n">alpha</span> <span class="o">&lt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">b</span> <span class="o">&lt;</span> <span class="n">c</span><span class="p">:</span>
                         <span class="n">transf</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
                         <span class="n">transf</span><span class="p">[</span><span class="mi">2</span><span class="p">][</span><span class="n">t</span><span class="p">[</span><span class="mi">2</span><span class="p">]]</span> <span class="o">=</span> <span class="mi">1</span>
-                        <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">landang</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">landang</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">180</span>
+                        <span class="n">alpha</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">alpha</span> <span class="o">/</span> <span class="mi">180</span>
                         <span class="n">new_matrix</span> <span class="o">=</span> <span class="p">[[</span><span class="n">a</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                                       <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">),</span> <span class="n">c</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)]]</span>
@@ -710,9 +709,8 @@ <h1>Source code for pymatgen.symmetry.analyzer</h1><div class="highlight"><pre>
             <span class="c1"># we use a LLL Minkowski-like reduction for the triclinic cells</span>
             <span class="n">struct</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">get_reduced_structure</span><span class="p">(</span><span class="s2">&quot;LLL&quot;</span><span class="p">)</span>
 
-            <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="p">[</span><span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">i</span> <span class="o">/</span> <span class="mi">180</span>
-                                  <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">latt</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
+            <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="n">latt</span><span class="o">.</span><span class="n">lengths</span>
+            <span class="n">alpha</span><span class="p">,</span> <span class="n">beta</span><span class="p">,</span> <span class="n">gamma</span> <span class="o">=</span> <span class="p">[</span><span class="n">math</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="n">i</span> <span class="o">/</span> <span class="mi">180</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">latt</span><span class="o">.</span><span class="n">angles</span><span class="p">]</span>
             <span class="n">new_matrix</span> <span class="o">=</span> <span class="kc">None</span>
             <span class="n">test_matrix</span> <span class="o">=</span> <span class="p">[[</span><span class="n">a</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span>
                            <span class="p">[</span><span class="n">b</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">gamma</span><span class="p">),</span> <span class="n">b</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">gamma</span><span class="p">),</span> <span class="mf">0.0</span><span class="p">],</span>
@@ -1703,7 +1701,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/bandstructure.html b/docs/_modules/pymatgen/symmetry/bandstructure.html
index 8ba97a3c40c..58be0a86a13 100644
--- a/docs/_modules/pymatgen/symmetry/bandstructure.html
+++ b/docs/_modules/pymatgen/symmetry/bandstructure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -49,6 +48,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Created on March 25, 2013</span>
+
+<span class="sd">@author: geoffroy</span>
+<span class="sd">&quot;&quot;&quot;</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
@@ -60,12 +64,6 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
 <span class="kn">from</span> <span class="nn">warnings</span> <span class="k">import</span> <span class="n">warn</span>
 <span class="kn">from</span> <span class="nn">pymatgen.symmetry.analyzer</span> <span class="k">import</span> <span class="n">SpacegroupAnalyzer</span>
 
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">Created on March 25, 2013</span>
-
-<span class="sd">@author: geoffroy</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
 
 <div class="viewcode-block" id="HighSymmKpath"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath">[docs]</a><span class="k">class</span> <span class="nc">HighSymmKpath</span><span class="p">:</span>
     <span class="sd">&quot;&quot;&quot;</span>
@@ -83,17 +81,18 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
 <span class="sd">    get_primitive_standard_structure(international_monoclinic=False)).</span>
 <span class="sd">    A warning will signal possible compatibility problems</span>
 <span class="sd">    with the given structure.</span>
-
-<span class="sd">    Args:</span>
-<span class="sd">        structure (Structure): Structure object</span>
-<span class="sd">        symprec (float): Tolerance for symmetry finding</span>
-<span class="sd">        angle_tolerance (float): Angle tolerance for symmetry finding.</span>
-<span class="sd">        atol (float): Absolute tolerance used to compare the input</span>
-<span class="sd">            structure with the one expected as primitive standard.</span>
-<span class="sd">            A warning will be issued if the lattices don&#39;t match.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">structure</span><span class="p">,</span> <span class="n">symprec</span><span class="o">=</span><span class="mf">0.01</span><span class="p">,</span> <span class="n">angle_tolerance</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-8</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Args:</span>
+<span class="sd">            structure (Structure): Structure object</span>
+<span class="sd">            symprec (float): Tolerance for symmetry finding</span>
+<span class="sd">            angle_tolerance (float): Angle tolerance for symmetry finding.</span>
+<span class="sd">            atol (float): Absolute tolerance used to compare the input</span>
+<span class="sd">                structure with the one expected as primitive standard.</span>
+<span class="sd">                A warning will be issued if the lattices don&#39;t match.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_structure</span> <span class="o">=</span> <span class="n">structure</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_sym</span> <span class="o">=</span> <span class="n">SpacegroupAnalyzer</span><span class="p">(</span><span class="n">structure</span><span class="p">,</span> <span class="n">symprec</span><span class="o">=</span><span class="n">symprec</span><span class="p">,</span>
                                        <span class="n">angle_tolerance</span><span class="o">=</span><span class="n">angle_tolerance</span><span class="p">)</span>
@@ -164,7 +163,7 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
             <span class="bp">self</span><span class="o">.</span><span class="n">_kpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">hex</span><span class="p">()</span>
 
         <span class="k">elif</span> <span class="n">lattice_type</span> <span class="o">==</span> <span class="s2">&quot;rhombohedral&quot;</span><span class="p">:</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
             <span class="k">if</span> <span class="n">alpha</span> <span class="o">&lt;</span> <span class="mi">90</span><span class="p">:</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">_kpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">rhl1</span><span class="p">(</span><span class="n">alpha</span> <span class="o">*</span> <span class="n">pi</span> <span class="o">/</span> <span class="mi">180</span><span class="p">)</span>
             <span class="k">else</span><span class="p">:</span>
@@ -172,14 +171,13 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
 
         <span class="k">elif</span> <span class="n">lattice_type</span> <span class="o">==</span> <span class="s2">&quot;monoclinic&quot;</span><span class="p">:</span>
             <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_conv</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">abc</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_conv</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="c1"># beta = self._conv.lattice.lengths_and_angles[1][1]</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_conv</span><span class="o">.</span><span class="n">lattice</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
 
             <span class="k">if</span> <span class="s2">&quot;P&quot;</span> <span class="ow">in</span> <span class="n">spg_symbol</span><span class="p">:</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">_kpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mcl</span><span class="p">(</span><span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span> <span class="o">*</span> <span class="n">pi</span> <span class="o">/</span> <span class="mi">180</span><span class="p">)</span>
 
             <span class="k">elif</span> <span class="s2">&quot;C&quot;</span> <span class="ow">in</span> <span class="n">spg_symbol</span><span class="p">:</span>
-                <span class="n">kgamma</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+                <span class="n">kgamma</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
                 <span class="k">if</span> <span class="n">kgamma</span> <span class="o">&gt;</span> <span class="mi">90</span><span class="p">:</span>
                     <span class="bp">self</span><span class="o">.</span><span class="n">_kpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mclc1</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span> <span class="o">*</span> <span class="n">pi</span> <span class="o">/</span> <span class="mi">180</span><span class="p">)</span>
                 <span class="k">if</span> <span class="n">kgamma</span> <span class="o">==</span> <span class="mi">90</span><span class="p">:</span>
@@ -198,9 +196,9 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
                 <span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Unexpected value for spg_symbol: </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">spg_symbol</span><span class="p">)</span>
 
         <span class="k">elif</span> <span class="n">lattice_type</span> <span class="o">==</span> <span class="s2">&quot;triclinic&quot;</span><span class="p">:</span>
-            <span class="n">kalpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">kbeta</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-            <span class="n">kgamma</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">lengths_and_angles</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+            <span class="n">kalpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+            <span class="n">kbeta</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+            <span class="n">kgamma</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_prim_rec</span><span class="o">.</span><span class="n">angles</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
             <span class="k">if</span> <span class="n">kalpha</span> <span class="o">&gt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">kbeta</span> <span class="o">&gt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">kgamma</span> <span class="o">&gt;</span> <span class="mi">90</span><span class="p">:</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">_kpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tria</span><span class="p">()</span>
             <span class="k">if</span> <span class="n">kalpha</span> <span class="o">&lt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">kbeta</span> <span class="o">&lt;</span> <span class="mi">90</span> <span class="ow">and</span> <span class="n">kgamma</span> <span class="o">&lt;</span> <span class="mi">90</span><span class="p">:</span>
@@ -284,6 +282,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
             <span class="k">return</span> <span class="n">frac_k_points</span><span class="p">,</span> <span class="n">sym_point_labels</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.cubic"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.cubic">[docs]</a>    <span class="k">def</span> <span class="nf">cubic</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Cubic HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;CUB&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;X&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
@@ -293,6 +296,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.fcc"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.fcc">[docs]</a>    <span class="k">def</span> <span class="nf">fcc</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Fcc HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;FCC&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;K&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">3.0</span> <span class="o">/</span> <span class="mf">8.0</span><span class="p">,</span> <span class="mf">3.0</span> <span class="o">/</span> <span class="mf">8.0</span><span class="p">,</span> <span class="mf">3.0</span> <span class="o">/</span> <span class="mf">4.0</span><span class="p">]),</span>
@@ -305,6 +313,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.bcc"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.bcc">[docs]</a>    <span class="k">def</span> <span class="nf">bcc</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Bcc HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;BCC&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.5</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">]),</span>
@@ -314,6 +327,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.tet"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.tet">[docs]</a>    <span class="k">def</span> <span class="nf">tet</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Tetragonal HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;TET&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;A&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">]),</span>
@@ -326,6 +344,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.bctet1"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.bctet1">[docs]</a>    <span class="k">def</span> <span class="nf">bctet1</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">a</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        BCT1 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;BCT1&quot;</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mf">4.0</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
@@ -340,6 +363,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.bctet2"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.bctet2">[docs]</a>    <span class="k">def</span> <span class="nf">bctet2</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">a</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        BCT2 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;BCT2&quot;</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mf">4.0</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
@@ -357,6 +385,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orc"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orc">[docs]</a>    <span class="k">def</span> <span class="nf">orc</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORC&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;R&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">]),</span>
@@ -371,6 +404,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orcf1"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf1">[docs]</a>    <span class="k">def</span> <span class="nf">orcf1</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic f1 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORCF1&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
@@ -389,6 +427,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orcf2"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf2">[docs]</a>    <span class="k">def</span> <span class="nf">orcf2</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic f2 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORCF2&quot;</span>
         <span class="n">phi</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">-</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
@@ -410,6 +453,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orcf3"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf3">[docs]</a>    <span class="k">def</span> <span class="nf">orcf3</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic f3 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORCF3&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
@@ -427,6 +475,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orci"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orci">[docs]</a>    <span class="k">def</span> <span class="nf">orci</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic I HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORCI&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">c</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
@@ -450,6 +503,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.orcc"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.orcc">[docs]</a>    <span class="k">def</span> <span class="nf">orcc</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Orthorhombic C HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;ORCC&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
@@ -467,6 +525,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.hex"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.hex">[docs]</a>    <span class="k">def</span> <span class="nf">hex</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Hexagonal HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;HEX&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;A&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">]),</span>
@@ -479,6 +542,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.rhl1"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.rhl1">[docs]</a>    <span class="k">def</span> <span class="nf">rhl1</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Rhombohedral 1 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;RHL1&quot;</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">4</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">))</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">4</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">))</span>
         <span class="n">nu</span> <span class="o">=</span> <span class="mf">3.0</span> <span class="o">/</span> <span class="mf">4.0</span> <span class="o">-</span> <span class="n">eta</span> <span class="o">/</span> <span class="mf">2.0</span>
@@ -499,6 +567,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.rhl2"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.rhl2">[docs]</a>    <span class="k">def</span> <span class="nf">rhl2</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Rhombohedral 2 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;RHL2&quot;</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tan</span><span class="p">(</span><span class="n">alpha</span> <span class="o">/</span> <span class="mf">2.0</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
         <span class="n">nu</span> <span class="o">=</span> <span class="mf">3.0</span> <span class="o">/</span> <span class="mf">4.0</span> <span class="o">-</span> <span class="n">eta</span> <span class="o">/</span> <span class="mf">2.0</span>
@@ -515,6 +588,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mcl"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mcl">[docs]</a>    <span class="k">def</span> <span class="nf">mcl</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">beta</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic 1 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCL&quot;</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">b</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span> <span class="o">/</span> <span class="n">c</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
         <span class="n">nu</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="n">eta</span> <span class="o">*</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span> <span class="o">/</span> <span class="n">b</span>
@@ -539,6 +617,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mclc1"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc1">[docs]</a>    <span class="k">def</span> <span class="nf">mclc1</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic C1 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCLC1&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">-</span> <span class="n">b</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="n">c</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">4</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">zeta</span> <span class="o">*</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="n">b</span>
@@ -566,6 +649,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mclc2"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc2">[docs]</a>    <span class="k">def</span> <span class="nf">mclc2</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic C2 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCLC2&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">-</span> <span class="n">b</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="n">c</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">4</span> <span class="o">*</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
         <span class="n">eta</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">zeta</span> <span class="o">*</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="n">b</span>
@@ -593,6 +681,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mclc3"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc3">[docs]</a>    <span class="k">def</span> <span class="nf">mclc3</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic C3 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCLC3&quot;</span>
         <span class="n">mu</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mf">4.0</span>
         <span class="n">delta</span> <span class="o">=</span> <span class="n">b</span> <span class="o">*</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
@@ -622,6 +715,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mclc4"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc4">[docs]</a>    <span class="k">def</span> <span class="nf">mclc4</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic C4 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCLC4&quot;</span>
         <span class="n">mu</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mf">4.0</span>
         <span class="n">delta</span> <span class="o">=</span> <span class="n">b</span> <span class="o">*</span> <span class="n">c</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
@@ -651,6 +749,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.mclc5"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc5">[docs]</a>    <span class="k">def</span> <span class="nf">mclc5</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Monoclinic C5 HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;MCLC5&quot;</span>
         <span class="n">zeta</span> <span class="o">=</span> <span class="p">(</span><span class="n">b</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">b</span> <span class="o">*</span> <span class="n">cos</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">/</span> <span class="n">c</span><span class="p">)</span>
                 <span class="o">/</span> <span class="n">sin</span><span class="p">(</span><span class="n">alpha</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="mi">4</span>
@@ -684,6 +787,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.tria"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.tria">[docs]</a>    <span class="k">def</span> <span class="nf">tria</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Trigonal a HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;TRI1a&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;L&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
@@ -698,6 +806,11 @@ <h1>Source code for pymatgen.symmetry.bandstructure</h1><div class="highlight"><
         <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;kpoints&#39;</span><span class="p">:</span> <span class="n">kpoints</span><span class="p">,</span> <span class="s1">&#39;path&#39;</span><span class="p">:</span> <span class="n">path</span><span class="p">}</span></div>
 
 <div class="viewcode-block" id="HighSymmKpath.trib"><a class="viewcode-back" href="../../../pymatgen.symmetry.bandstructure.html#pymatgen.symmetry.bandstructure.HighSymmKpath.trib">[docs]</a>    <span class="k">def</span> <span class="nf">trib</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        Trigonal b HighSymmKPath</span>
+
+<span class="sd">        :return: Dict</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;TRI1b&quot;</span>
         <span class="n">kpoints</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;</span><span class="se">\\</span><span class="s1">Gamma&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
                    <span class="s1">&#39;L&#39;</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mf">0.5</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">]),</span>
@@ -748,7 +861,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/groups.html b/docs/_modules/pymatgen/symmetry/groups.html
index ee186b19abf..7b63ca480e5 100644
--- a/docs/_modules/pymatgen/symmetry/groups.html
+++ b/docs/_modules/pymatgen/symmetry/groups.html
@@ -13,10 +13,9 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
-
+ 
 <script type="text/javascript">
   var _gaq = _gaq || [];
   _gaq.push(['_setAccount', 'UA-33990148-1']);
@@ -35,20 +34,26 @@ <h3>Navigation</h3>
              >modules</a> |</li>
         <li class="nav-item nav-item-0"><a href="../../../index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
-          <li class="nav-item nav-item-2"><a href="../../pymatgen.html" accesskey="U">pymatgen</a> &#187;</li>
+          <li class="nav-item nav-item-2"><a href="../../pymatgen.html" accesskey="U">pymatgen</a> &#187;</li> 
       </ul>
-    </div>
+    </div>  
 
     <div class="document">
       <div class="documentwrapper">
         <div class="bodywrapper">
           <div class="body" role="main">
-
+            
   <h1>Source code for pymatgen.symmetry.groups</h1><div class="highlight"><pre>
 <span></span><span class="c1"># coding: utf-8</span>
 <span class="c1"># Copyright (c) Pymatgen Development Team.</span>
 <span class="c1"># Distributed under the terms of the MIT License.</span>
 
+<span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">Defines SymmetryGroup parent class and PointGroup and SpaceGroup classes.</span>
+<span class="sd">Shyue Ping Ong thanks Marc De Graef for his generous sharing of his</span>
+<span class="sd">SpaceGroup data as published in his textbook &quot;Structure of Materials&quot;.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">from</span> <span class="nn">itertools</span> <span class="k">import</span> <span class="n">product</span>
 <span class="kn">from</span> <span class="nn">fractions</span> <span class="k">import</span> <span class="n">Fraction</span>
@@ -62,36 +67,31 @@ <h1>Source code for pymatgen.symmetry.groups</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">pymatgen.core.operations</span> <span class="k">import</span> <span class="n">SymmOp</span>
 <span class="kn">from</span> <span class="nn">monty.design_patterns</span> <span class="k">import</span> <span class="n">cached_class</span>
 
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">Defines SymmetryGroup parent class and PointGroup and SpaceGroup classes.</span>
-<span class="sd">Shyue Ping Ong thanks Marc De Graef for his generous sharing of his</span>
-<span class="sd">SpaceGroup data as published in his textbook &quot;Structure of Materials&quot;.</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
 <span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
 <span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;Copyright 2013, The Materials Virtual Lab&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.1&quot;</span>
-<span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Shyue Ping Ong&quot;</span>
-<span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;ongsp@ucsd.edu&quot;</span>
-<span class="n">__date__</span> <span class="o">=</span> <span class="s2">&quot;4/4/14&quot;</span>
 
 <span class="n">SYMM_DATA</span> <span class="o">=</span> <span class="kc">None</span>
 
 
-<div class="viewcode-block" id="_get_symm_data"><a class="viewcode-back" href="../../../pymatgen.symmetry.groups.html#pymatgen.symmetry.groups._get_symm_data">[docs]</a><span class="k">def</span> <span class="nf">_get_symm_data</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_get_symm_data</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
     <span class="k">global</span> <span class="n">SYMM_DATA</span>
     <span class="k">if</span> <span class="n">SYMM_DATA</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">SYMM_DATA</span> <span class="o">=</span> <span class="n">loadfn</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">),</span>
                                         <span class="s2">&quot;symm_data.json&quot;</span><span class="p">))</span>
-    <span class="k">return</span> <span class="n">SYMM_DATA</span><span class="p">[</span><span class="n">name</span><span class="p">]</span></div>
+    <span class="k">return</span> <span class="n">SYMM_DATA</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
 
 
-<div class="viewcode-block" id="SymmetryGroup"><a class="viewcode-back" href="../../../pymatgen.symmetry.groups.html#pymatgen.symmetry.groups.SymmetryGroup">[docs]</a><span class="k">class</span> <span class="nc">SymmetryGroup</span><span class="p">(</span><span class="n">Sequence</span><span class="p">):</span>
-    <span class="n">__metaclass__</span> <span class="o">=</span> <span class="n">ABCMeta</span>
+<div class="viewcode-block" id="SymmetryGroup"><a class="viewcode-back" href="../../../pymatgen.symmetry.groups.html#pymatgen.symmetry.groups.SymmetryGroup">[docs]</a><span class="k">class</span> <span class="nc">SymmetryGroup</span><span class="p">(</span><span class="n">Sequence</span><span class="p">,</span> <span class="n">metaclass</span><span class="o">=</span><span class="n">ABCMeta</span><span class="p">):</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    Abstract class representation a symmetry group.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="nd">@property</span>
     <span class="nd">@abstractmethod</span>
     <span class="k">def</span> <span class="nf">symmetry_ops</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: List of symmetry operations</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">pass</span>
 
     <span class="k">def</span> <span class="nf">__contains__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">item</span><span class="p">):</span>
@@ -172,6 +172,9 @@ <h1>Source code for pymatgen.symmetry.groups</h1><div class="highlight"><pre>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">symmetry_ops</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: List of symmetry operations for SpaceGroup</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_symmetry_ops</span>
 
     <span class="k">def</span> <span class="nf">_generate_full_symmetry_ops</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -415,7 +418,8 @@ <h1>Source code for pymatgen.symmetry.groups</h1><div class="highlight"><pre>
 <span class="sd">            angle_tol (float): The tolerance to check for equality of angles</span>
 <span class="sd">                in degrees.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">abc</span><span class="p">,</span> <span class="n">angles</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+        <span class="n">abc</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+        <span class="n">angles</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
         <span class="n">crys_system</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">crystal_system</span>
 
         <span class="k">def</span> <span class="nf">check</span><span class="p">(</span><span class="n">param</span><span class="p">,</span> <span class="n">ref</span><span class="p">,</span> <span class="n">tolerance</span><span class="p">):</span>
@@ -448,6 +452,9 @@ <h1>Source code for pymatgen.symmetry.groups</h1><div class="highlight"><pre>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">crystal_system</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">        :return: Crystal system for space group.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">i</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">int_number</span>
         <span class="k">if</span> <span class="n">i</span> <span class="o">&lt;=</span> <span class="mi">2</span><span class="p">:</span>
             <span class="k">return</span> <span class="s2">&quot;triclinic&quot;</span>
@@ -608,13 +615,13 @@ <h3>Navigation</h3>
              >modules</a> |</li>
         <li class="nav-item nav-item-0"><a href="../../../index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
-          <li class="nav-item nav-item-2"><a href="../../pymatgen.html" >pymatgen</a> &#187;</li>
+          <li class="nav-item nav-item-2"><a href="../../pymatgen.html" >pymatgen</a> &#187;</li> 
       </ul>
     </div>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/maggroups.html b/docs/_modules/pymatgen/symmetry/maggroups.html
index 8cea9e76155..936c36d8933 100644
--- a/docs/_modules/pymatgen/symmetry/maggroups.html
+++ b/docs/_modules/pymatgen/symmetry/maggroups.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -422,7 +421,8 @@ <h1>Source code for pymatgen.symmetry.maggroups</h1><div class="highlight"><pre>
 <span class="sd">                in degrees.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># function from pymatgen.symmetry.groups.SpaceGroup</span>
-        <span class="n">abc</span><span class="p">,</span> <span class="n">angles</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths_and_angles</span>
+        <span class="n">abc</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">lengths</span>
+        <span class="n">angles</span> <span class="o">=</span> <span class="n">lattice</span><span class="o">.</span><span class="n">angles</span>
         <span class="n">crys_system</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">crystal_system</span>
 
         <span class="k">def</span> <span class="nf">check</span><span class="p">(</span><span class="n">param</span><span class="p">,</span> <span class="n">ref</span><span class="p">,</span> <span class="n">tolerance</span><span class="p">):</span>
@@ -593,7 +593,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/settings.html b/docs/_modules/pymatgen/symmetry/settings.html
index dd24eaf4a6b..280da36e793 100644
--- a/docs/_modules/pymatgen/symmetry/settings.html
+++ b/docs/_modules/pymatgen/symmetry/settings.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -274,7 +273,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/site_symmetries.html b/docs/_modules/pymatgen/symmetry/site_symmetries.html
index b040cef13be..392e2dbe135 100644
--- a/docs/_modules/pymatgen/symmetry/site_symmetries.html
+++ b/docs/_modules/pymatgen/symmetry/site_symmetries.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -170,7 +169,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/symmetry/structure.html b/docs/_modules/pymatgen/symmetry/structure.html
index e8e9984516d..7e0ec5e8af0 100644
--- a/docs/_modules/pymatgen/symmetry/structure.html
+++ b/docs/_modules/pymatgen/symmetry/structure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -160,7 +159,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/transformations/advanced_transformations.html b/docs/_modules/pymatgen/transformations/advanced_transformations.html
index f4d8da65bb0..911831412d8 100644
--- a/docs/_modules/pymatgen/transformations/advanced_transformations.html
+++ b/docs/_modules/pymatgen/transformations/advanced_transformations.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -2219,7 +2218,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/transformations/defect_transformations.html b/docs/_modules/pymatgen/transformations/defect_transformations.html
index fd9f0262220..bdddf739d84 100644
--- a/docs/_modules/pymatgen/transformations/defect_transformations.html
+++ b/docs/_modules/pymatgen/transformations/defect_transformations.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -141,7 +140,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/transformations/site_transformations.html b/docs/_modules/pymatgen/transformations/site_transformations.html
index 23d82fe1e2d..723fbda4406 100644
--- a/docs/_modules/pymatgen/transformations/site_transformations.html
+++ b/docs/_modules/pymatgen/transformations/site_transformations.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -689,7 +688,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/transformations/standard_transformations.html b/docs/_modules/pymatgen/transformations/standard_transformations.html
index edf243da0ac..54457b43328 100644
--- a/docs/_modules/pymatgen/transformations/standard_transformations.html
+++ b/docs/_modules/pymatgen/transformations/standard_transformations.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1214,7 +1213,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/transformations/transformation_abc.html b/docs/_modules/pymatgen/transformations/transformation_abc.html
index 0ec70650923..109f6c6e362 100644
--- a/docs/_modules/pymatgen/transformations/transformation_abc.html
+++ b/docs/_modules/pymatgen/transformations/transformation_abc.html
@@ -13,7 +13,6 @@
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -166,7 +165,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/convergence.html b/docs/_modules/pymatgen/util/convergence.html
index 7025e2a0b3e..11349c25afb 100644
--- a/docs/_modules/pymatgen/util/convergence.html
+++ b/docs/_modules/pymatgen/util/convergence.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -577,7 +576,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/coord.html b/docs/_modules/pymatgen/util/coord.html
index e87a19eb856..5b5c1eda80d 100644
--- a/docs/_modules/pymatgen/util/coord.html
+++ b/docs/_modules/pymatgen/util/coord.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -561,7 +560,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/io_utils.html b/docs/_modules/pymatgen/util/io_utils.html
index 16546bfcd42..b39e48581a5 100644
--- a/docs/_modules/pymatgen/util/io_utils.html
+++ b/docs/_modules/pymatgen/util/io_utils.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -274,7 +273,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/num.html b/docs/_modules/pymatgen/util/num.html
index 81fa1775633..06f638476a6 100644
--- a/docs/_modules/pymatgen/util/num.html
+++ b/docs/_modules/pymatgen/util/num.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -259,7 +258,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/plotting.html b/docs/_modules/pymatgen/util/plotting.html
index 2cd3a2bf4dd..f813892d6b2 100644
--- a/docs/_modules/pymatgen/util/plotting.html
+++ b/docs/_modules/pymatgen/util/plotting.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -665,7 +664,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/provenance.html b/docs/_modules/pymatgen/util/provenance.html
index 0eb47a6ff4a..8a89bc5f9f1 100644
--- a/docs/_modules/pymatgen/util/provenance.html
+++ b/docs/_modules/pymatgen/util/provenance.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -437,7 +436,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/sequence.html b/docs/_modules/pymatgen/util/sequence.html
index 44bc8b0d9b4..8d3e023053b 100644
--- a/docs/_modules/pymatgen/util/sequence.html
+++ b/docs/_modules/pymatgen/util/sequence.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -130,7 +129,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/serialization.html b/docs/_modules/pymatgen/util/serialization.html
index 52ed2f01ec9..2426ac11fa4 100644
--- a/docs/_modules/pymatgen/util/serialization.html
+++ b/docs/_modules/pymatgen/util/serialization.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -224,7 +223,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/string.html b/docs/_modules/pymatgen/util/string.html
index cfad5a5ecb3..cdd6918fc30 100644
--- a/docs/_modules/pymatgen/util/string.html
+++ b/docs/_modules/pymatgen/util/string.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -459,7 +458,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/util/testing.html b/docs/_modules/pymatgen/util/testing.html
index 432eca127b7..e90fde99d55 100644
--- a/docs/_modules/pymatgen/util/testing.html
+++ b/docs/_modules/pymatgen/util/testing.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -254,7 +253,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/vis/plotters.html b/docs/_modules/pymatgen/vis/plotters.html
index 06d591f955d..3f110c683b2 100644
--- a/docs/_modules/pymatgen/vis/plotters.html
+++ b/docs/_modules/pymatgen/vis/plotters.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -234,7 +233,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/vis/structure_chemview.html b/docs/_modules/pymatgen/vis/structure_chemview.html
index 44d6a5049d0..9e9423c52ab 100644
--- a/docs/_modules/pymatgen/vis/structure_chemview.html
+++ b/docs/_modules/pymatgen/vis/structure_chemview.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -158,7 +157,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_modules/pymatgen/vis/structure_vtk.html b/docs/_modules/pymatgen/vis/structure_vtk.html
index ee61d8e5d52..59050bc9a3e 100644
--- a/docs/_modules/pymatgen/vis/structure_vtk.html
+++ b/docs/_modules/pymatgen/vis/structure_vtk.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="../../../_static/doctools.js"></script>
     <script type="text/javascript" src="../../../_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
  
@@ -1214,7 +1213,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/_static/basic.css b/docs/_static/basic.css
index c41d718e429..ea6972d5527 100644
--- a/docs/_static/basic.css
+++ b/docs/_static/basic.css
@@ -520,14 +520,15 @@ dl.citation > dd:after {
 }
 
 dl.field-list {
-    display: flex;
-    flex-wrap: wrap;
+    display: grid;
+    grid-template-columns: fit-content(30%) auto;
 }
 
 dl.field-list > dt {
-    flex-basis: 20%;
     font-weight: bold;
     word-break: break-word;
+    padding-left: 0.5em;
+    padding-right: 5px;
 }
 
 dl.field-list > dt:after {
@@ -535,8 +536,8 @@ dl.field-list > dt:after {
 }
 
 dl.field-list > dd {
-    flex-basis: 70%;
-    padding-left: 1em;
+    padding-left: 0.5em;
+    margin-top: 0em;
     margin-left: 0em;
     margin-bottom: 0em;
 }
diff --git a/docs/_static/jquery-3.4.1.js b/docs/_static/jquery-3.4.1.js
new file mode 100644
index 00000000000..773ad95c56f
--- /dev/null
+++ b/docs/_static/jquery-3.4.1.js
@@ -0,0 +1,10598 @@
+/*!
+ * jQuery JavaScript Library v3.4.1
+ * https://jquery.com/
+ *
+ * Includes Sizzle.js
+ * https://sizzlejs.com/
+ *
+ * Copyright JS Foundation and other contributors
+ * Released under the MIT license
+ * https://jquery.org/license
+ *
+ * Date: 2019-05-01T21:04Z
+ */
+( function( global, factory ) {
+
+	"use strict";
+
+	if ( typeof module === "object" && typeof module.exports === "object" ) {
+
+		// For CommonJS and CommonJS-like environments where a proper `window`
+		// is present, execute the factory and get jQuery.
+		// For environments that do not have a `window` with a `document`
+		// (such as Node.js), expose a factory as module.exports.
+		// This accentuates the need for the creation of a real `window`.
+		// e.g. var jQuery = require("jquery")(window);
+		// See ticket #14549 for more info.
+		module.exports = global.document ?
+			factory( global, true ) :
+			function( w ) {
+				if ( !w.document ) {
+					throw new Error( "jQuery requires a window with a document" );
+				}
+				return factory( w );
+			};
+	} else {
+		factory( global );
+	}
+
+// Pass this if window is not defined yet
+} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) {
+
+// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1
+// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode
+// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common
+// enough that all such attempts are guarded in a try block.
+"use strict";
+
+var arr = [];
+
+var document = window.document;
+
+var getProto = Object.getPrototypeOf;
+
+var slice = arr.slice;
+
+var concat = arr.concat;
+
+var push = arr.push;
+
+var indexOf = arr.indexOf;
+
+var class2type = {};
+
+var toString = class2type.toString;
+
+var hasOwn = class2type.hasOwnProperty;
+
+var fnToString = hasOwn.toString;
+
+var ObjectFunctionString = fnToString.call( Object );
+
+var support = {};
+
+var isFunction = function isFunction( obj ) {
+
+      // Support: Chrome <=57, Firefox <=52
+      // In some browsers, typeof returns "function" for HTML <object> elements
+      // (i.e., `typeof document.createElement( "object" ) === "function"`).
+      // We don't want to classify *any* DOM node as a function.
+      return typeof obj === "function" && typeof obj.nodeType !== "number";
+  };
+
+
+var isWindow = function isWindow( obj ) {
+		return obj != null && obj === obj.window;
+	};
+
+
+
+
+	var preservedScriptAttributes = {
+		type: true,
+		src: true,
+		nonce: true,
+		noModule: true
+	};
+
+	function DOMEval( code, node, doc ) {
+		doc = doc || document;
+
+		var i, val,
+			script = doc.createElement( "script" );
+
+		script.text = code;
+		if ( node ) {
+			for ( i in preservedScriptAttributes ) {
+
+				// Support: Firefox 64+, Edge 18+
+				// Some browsers don't support the "nonce" property on scripts.
+				// On the other hand, just using `getAttribute` is not enough as
+				// the `nonce` attribute is reset to an empty string whenever it
+				// becomes browsing-context connected.
+				// See https://github.com/whatwg/html/issues/2369
+				// See https://html.spec.whatwg.org/#nonce-attributes
+				// The `node.getAttribute` check was added for the sake of
+				// `jQuery.globalEval` so that it can fake a nonce-containing node
+				// via an object.
+				val = node[ i ] || node.getAttribute && node.getAttribute( i );
+				if ( val ) {
+					script.setAttribute( i, val );
+				}
+			}
+		}
+		doc.head.appendChild( script ).parentNode.removeChild( script );
+	}
+
+
+function toType( obj ) {
+	if ( obj == null ) {
+		return obj + "";
+	}
+
+	// Support: Android <=2.3 only (functionish RegExp)
+	return typeof obj === "object" || typeof obj === "function" ?
+		class2type[ toString.call( obj ) ] || "object" :
+		typeof obj;
+}
+/* global Symbol */
+// Defining this global in .eslintrc.json would create a danger of using the global
+// unguarded in another place, it seems safer to define global only for this module
+
+
+
+var
+	version = "3.4.1",
+
+	// Define a local copy of jQuery
+	jQuery = function( selector, context ) {
+
+		// The jQuery object is actually just the init constructor 'enhanced'
+		// Need init if jQuery is called (just allow error to be thrown if not included)
+		return new jQuery.fn.init( selector, context );
+	},
+
+	// Support: Android <=4.0 only
+	// Make sure we trim BOM and NBSP
+	rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g;
+
+jQuery.fn = jQuery.prototype = {
+
+	// The current version of jQuery being used
+	jquery: version,
+
+	constructor: jQuery,
+
+	// The default length of a jQuery object is 0
+	length: 0,
+
+	toArray: function() {
+		return slice.call( this );
+	},
+
+	// Get the Nth element in the matched element set OR
+	// Get the whole matched element set as a clean array
+	get: function( num ) {
+
+		// Return all the elements in a clean array
+		if ( num == null ) {
+			return slice.call( this );
+		}
+
+		// Return just the one element from the set
+		return num < 0 ? this[ num + this.length ] : this[ num ];
+	},
+
+	// Take an array of elements and push it onto the stack
+	// (returning the new matched element set)
+	pushStack: function( elems ) {
+
+		// Build a new jQuery matched element set
+		var ret = jQuery.merge( this.constructor(), elems );
+
+		// Add the old object onto the stack (as a reference)
+		ret.prevObject = this;
+
+		// Return the newly-formed element set
+		return ret;
+	},
+
+	// Execute a callback for every element in the matched set.
+	each: function( callback ) {
+		return jQuery.each( this, callback );
+	},
+
+	map: function( callback ) {
+		return this.pushStack( jQuery.map( this, function( elem, i ) {
+			return callback.call( elem, i, elem );
+		} ) );
+	},
+
+	slice: function() {
+		return this.pushStack( slice.apply( this, arguments ) );
+	},
+
+	first: function() {
+		return this.eq( 0 );
+	},
+
+	last: function() {
+		return this.eq( -1 );
+	},
+
+	eq: function( i ) {
+		var len = this.length,
+			j = +i + ( i < 0 ? len : 0 );
+		return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] );
+	},
+
+	end: function() {
+		return this.prevObject || this.constructor();
+	},
+
+	// For internal use only.
+	// Behaves like an Array's method, not like a jQuery method.
+	push: push,
+	sort: arr.sort,
+	splice: arr.splice
+};
+
+jQuery.extend = jQuery.fn.extend = function() {
+	var options, name, src, copy, copyIsArray, clone,
+		target = arguments[ 0 ] || {},
+		i = 1,
+		length = arguments.length,
+		deep = false;
+
+	// Handle a deep copy situation
+	if ( typeof target === "boolean" ) {
+		deep = target;
+
+		// Skip the boolean and the target
+		target = arguments[ i ] || {};
+		i++;
+	}
+
+	// Handle case when target is a string or something (possible in deep copy)
+	if ( typeof target !== "object" && !isFunction( target ) ) {
+		target = {};
+	}
+
+	// Extend jQuery itself if only one argument is passed
+	if ( i === length ) {
+		target = this;
+		i--;
+	}
+
+	for ( ; i < length; i++ ) {
+
+		// Only deal with non-null/undefined values
+		if ( ( options = arguments[ i ] ) != null ) {
+
+			// Extend the base object
+			for ( name in options ) {
+				copy = options[ name ];
+
+				// Prevent Object.prototype pollution
+				// Prevent never-ending loop
+				if ( name === "__proto__" || target === copy ) {
+					continue;
+				}
+
+				// Recurse if we're merging plain objects or arrays
+				if ( deep && copy && ( jQuery.isPlainObject( copy ) ||
+					( copyIsArray = Array.isArray( copy ) ) ) ) {
+					src = target[ name ];
+
+					// Ensure proper type for the source value
+					if ( copyIsArray && !Array.isArray( src ) ) {
+						clone = [];
+					} else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) {
+						clone = {};
+					} else {
+						clone = src;
+					}
+					copyIsArray = false;
+
+					// Never move original objects, clone them
+					target[ name ] = jQuery.extend( deep, clone, copy );
+
+				// Don't bring in undefined values
+				} else if ( copy !== undefined ) {
+					target[ name ] = copy;
+				}
+			}
+		}
+	}
+
+	// Return the modified object
+	return target;
+};
+
+jQuery.extend( {
+
+	// Unique for each copy of jQuery on the page
+	expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ),
+
+	// Assume jQuery is ready without the ready module
+	isReady: true,
+
+	error: function( msg ) {
+		throw new Error( msg );
+	},
+
+	noop: function() {},
+
+	isPlainObject: function( obj ) {
+		var proto, Ctor;
+
+		// Detect obvious negatives
+		// Use toString instead of jQuery.type to catch host objects
+		if ( !obj || toString.call( obj ) !== "[object Object]" ) {
+			return false;
+		}
+
+		proto = getProto( obj );
+
+		// Objects with no prototype (e.g., `Object.create( null )`) are plain
+		if ( !proto ) {
+			return true;
+		}
+
+		// Objects with prototype are plain iff they were constructed by a global Object function
+		Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor;
+		return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString;
+	},
+
+	isEmptyObject: function( obj ) {
+		var name;
+
+		for ( name in obj ) {
+			return false;
+		}
+		return true;
+	},
+
+	// Evaluates a script in a global context
+	globalEval: function( code, options ) {
+		DOMEval( code, { nonce: options && options.nonce } );
+	},
+
+	each: function( obj, callback ) {
+		var length, i = 0;
+
+		if ( isArrayLike( obj ) ) {
+			length = obj.length;
+			for ( ; i < length; i++ ) {
+				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
+					break;
+				}
+			}
+		} else {
+			for ( i in obj ) {
+				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
+					break;
+				}
+			}
+		}
+
+		return obj;
+	},
+
+	// Support: Android <=4.0 only
+	trim: function( text ) {
+		return text == null ?
+			"" :
+			( text + "" ).replace( rtrim, "" );
+	},
+
+	// results is for internal usage only
+	makeArray: function( arr, results ) {
+		var ret = results || [];
+
+		if ( arr != null ) {
+			if ( isArrayLike( Object( arr ) ) ) {
+				jQuery.merge( ret,
+					typeof arr === "string" ?
+					[ arr ] : arr
+				);
+			} else {
+				push.call( ret, arr );
+			}
+		}
+
+		return ret;
+	},
+
+	inArray: function( elem, arr, i ) {
+		return arr == null ? -1 : indexOf.call( arr, elem, i );
+	},
+
+	// Support: Android <=4.0 only, PhantomJS 1 only
+	// push.apply(_, arraylike) throws on ancient WebKit
+	merge: function( first, second ) {
+		var len = +second.length,
+			j = 0,
+			i = first.length;
+
+		for ( ; j < len; j++ ) {
+			first[ i++ ] = second[ j ];
+		}
+
+		first.length = i;
+
+		return first;
+	},
+
+	grep: function( elems, callback, invert ) {
+		var callbackInverse,
+			matches = [],
+			i = 0,
+			length = elems.length,
+			callbackExpect = !invert;
+
+		// Go through the array, only saving the items
+		// that pass the validator function
+		for ( ; i < length; i++ ) {
+			callbackInverse = !callback( elems[ i ], i );
+			if ( callbackInverse !== callbackExpect ) {
+				matches.push( elems[ i ] );
+			}
+		}
+
+		return matches;
+	},
+
+	// arg is for internal usage only
+	map: function( elems, callback, arg ) {
+		var length, value,
+			i = 0,
+			ret = [];
+
+		// Go through the array, translating each of the items to their new values
+		if ( isArrayLike( elems ) ) {
+			length = elems.length;
+			for ( ; i < length; i++ ) {
+				value = callback( elems[ i ], i, arg );
+
+				if ( value != null ) {
+					ret.push( value );
+				}
+			}
+
+		// Go through every key on the object,
+		} else {
+			for ( i in elems ) {
+				value = callback( elems[ i ], i, arg );
+
+				if ( value != null ) {
+					ret.push( value );
+				}
+			}
+		}
+
+		// Flatten any nested arrays
+		return concat.apply( [], ret );
+	},
+
+	// A global GUID counter for objects
+	guid: 1,
+
+	// jQuery.support is not used in Core but other projects attach their
+	// properties to it so it needs to exist.
+	support: support
+} );
+
+if ( typeof Symbol === "function" ) {
+	jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ];
+}
+
+// Populate the class2type map
+jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ),
+function( i, name ) {
+	class2type[ "[object " + name + "]" ] = name.toLowerCase();
+} );
+
+function isArrayLike( obj ) {
+
+	// Support: real iOS 8.2 only (not reproducible in simulator)
+	// `in` check used to prevent JIT error (gh-2145)
+	// hasOwn isn't used here due to false negatives
+	// regarding Nodelist length in IE
+	var length = !!obj && "length" in obj && obj.length,
+		type = toType( obj );
+
+	if ( isFunction( obj ) || isWindow( obj ) ) {
+		return false;
+	}
+
+	return type === "array" || length === 0 ||
+		typeof length === "number" && length > 0 && ( length - 1 ) in obj;
+}
+var Sizzle =
+/*!
+ * Sizzle CSS Selector Engine v2.3.4
+ * https://sizzlejs.com/
+ *
+ * Copyright JS Foundation and other contributors
+ * Released under the MIT license
+ * https://js.foundation/
+ *
+ * Date: 2019-04-08
+ */
+(function( window ) {
+
+var i,
+	support,
+	Expr,
+	getText,
+	isXML,
+	tokenize,
+	compile,
+	select,
+	outermostContext,
+	sortInput,
+	hasDuplicate,
+
+	// Local document vars
+	setDocument,
+	document,
+	docElem,
+	documentIsHTML,
+	rbuggyQSA,
+	rbuggyMatches,
+	matches,
+	contains,
+
+	// Instance-specific data
+	expando = "sizzle" + 1 * new Date(),
+	preferredDoc = window.document,
+	dirruns = 0,
+	done = 0,
+	classCache = createCache(),
+	tokenCache = createCache(),
+	compilerCache = createCache(),
+	nonnativeSelectorCache = createCache(),
+	sortOrder = function( a, b ) {
+		if ( a === b ) {
+			hasDuplicate = true;
+		}
+		return 0;
+	},
+
+	// Instance methods
+	hasOwn = ({}).hasOwnProperty,
+	arr = [],
+	pop = arr.pop,
+	push_native = arr.push,
+	push = arr.push,
+	slice = arr.slice,
+	// Use a stripped-down indexOf as it's faster than native
+	// https://jsperf.com/thor-indexof-vs-for/5
+	indexOf = function( list, elem ) {
+		var i = 0,
+			len = list.length;
+		for ( ; i < len; i++ ) {
+			if ( list[i] === elem ) {
+				return i;
+			}
+		}
+		return -1;
+	},
+
+	booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped",
+
+	// Regular expressions
+
+	// http://www.w3.org/TR/css3-selectors/#whitespace
+	whitespace = "[\\x20\\t\\r\\n\\f]",
+
+	// http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier
+	identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+",
+
+	// Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors
+	attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace +
+		// Operator (capture 2)
+		"*([*^$|!~]?=)" + whitespace +
+		// "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]"
+		"*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace +
+		"*\\]",
+
+	pseudos = ":(" + identifier + ")(?:\\((" +
+		// To reduce the number of selectors needing tokenize in the preFilter, prefer arguments:
+		// 1. quoted (capture 3; capture 4 or capture 5)
+		"('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" +
+		// 2. simple (capture 6)
+		"((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" +
+		// 3. anything else (capture 2)
+		".*" +
+		")\\)|)",
+
+	// Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter
+	rwhitespace = new RegExp( whitespace + "+", "g" ),
+	rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ),
+
+	rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ),
+	rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ),
+	rdescend = new RegExp( whitespace + "|>" ),
+
+	rpseudo = new RegExp( pseudos ),
+	ridentifier = new RegExp( "^" + identifier + "$" ),
+
+	matchExpr = {
+		"ID": new RegExp( "^#(" + identifier + ")" ),
+		"CLASS": new RegExp( "^\\.(" + identifier + ")" ),
+		"TAG": new RegExp( "^(" + identifier + "|[*])" ),
+		"ATTR": new RegExp( "^" + attributes ),
+		"PSEUDO": new RegExp( "^" + pseudos ),
+		"CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace +
+			"*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace +
+			"*(\\d+)|))" + whitespace + "*\\)|)", "i" ),
+		"bool": new RegExp( "^(?:" + booleans + ")$", "i" ),
+		// For use in libraries implementing .is()
+		// We use this for POS matching in `select`
+		"needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" +
+			whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" )
+	},
+
+	rhtml = /HTML$/i,
+	rinputs = /^(?:input|select|textarea|button)$/i,
+	rheader = /^h\d$/i,
+
+	rnative = /^[^{]+\{\s*\[native \w/,
+
+	// Easily-parseable/retrievable ID or TAG or CLASS selectors
+	rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/,
+
+	rsibling = /[+~]/,
+
+	// CSS escapes
+	// http://www.w3.org/TR/CSS21/syndata.html#escaped-characters
+	runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ),
+	funescape = function( _, escaped, escapedWhitespace ) {
+		var high = "0x" + escaped - 0x10000;
+		// NaN means non-codepoint
+		// Support: Firefox<24
+		// Workaround erroneous numeric interpretation of +"0x"
+		return high !== high || escapedWhitespace ?
+			escaped :
+			high < 0 ?
+				// BMP codepoint
+				String.fromCharCode( high + 0x10000 ) :
+				// Supplemental Plane codepoint (surrogate pair)
+				String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 );
+	},
+
+	// CSS string/identifier serialization
+	// https://drafts.csswg.org/cssom/#common-serializing-idioms
+	rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g,
+	fcssescape = function( ch, asCodePoint ) {
+		if ( asCodePoint ) {
+
+			// U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER
+			if ( ch === "\0" ) {
+				return "\uFFFD";
+			}
+
+			// Control characters and (dependent upon position) numbers get escaped as code points
+			return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " ";
+		}
+
+		// Other potentially-special ASCII characters get backslash-escaped
+		return "\\" + ch;
+	},
+
+	// Used for iframes
+	// See setDocument()
+	// Removing the function wrapper causes a "Permission Denied"
+	// error in IE
+	unloadHandler = function() {
+		setDocument();
+	},
+
+	inDisabledFieldset = addCombinator(
+		function( elem ) {
+			return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset";
+		},
+		{ dir: "parentNode", next: "legend" }
+	);
+
+// Optimize for push.apply( _, NodeList )
+try {
+	push.apply(
+		(arr = slice.call( preferredDoc.childNodes )),
+		preferredDoc.childNodes
+	);
+	// Support: Android<4.0
+	// Detect silently failing push.apply
+	arr[ preferredDoc.childNodes.length ].nodeType;
+} catch ( e ) {
+	push = { apply: arr.length ?
+
+		// Leverage slice if possible
+		function( target, els ) {
+			push_native.apply( target, slice.call(els) );
+		} :
+
+		// Support: IE<9
+		// Otherwise append directly
+		function( target, els ) {
+			var j = target.length,
+				i = 0;
+			// Can't trust NodeList.length
+			while ( (target[j++] = els[i++]) ) {}
+			target.length = j - 1;
+		}
+	};
+}
+
+function Sizzle( selector, context, results, seed ) {
+	var m, i, elem, nid, match, groups, newSelector,
+		newContext = context && context.ownerDocument,
+
+		// nodeType defaults to 9, since context defaults to document
+		nodeType = context ? context.nodeType : 9;
+
+	results = results || [];
+
+	// Return early from calls with invalid selector or context
+	if ( typeof selector !== "string" || !selector ||
+		nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) {
+
+		return results;
+	}
+
+	// Try to shortcut find operations (as opposed to filters) in HTML documents
+	if ( !seed ) {
+
+		if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) {
+			setDocument( context );
+		}
+		context = context || document;
+
+		if ( documentIsHTML ) {
+
+			// If the selector is sufficiently simple, try using a "get*By*" DOM method
+			// (excepting DocumentFragment context, where the methods don't exist)
+			if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) {
+
+				// ID selector
+				if ( (m = match[1]) ) {
+
+					// Document context
+					if ( nodeType === 9 ) {
+						if ( (elem = context.getElementById( m )) ) {
+
+							// Support: IE, Opera, Webkit
+							// TODO: identify versions
+							// getElementById can match elements by name instead of ID
+							if ( elem.id === m ) {
+								results.push( elem );
+								return results;
+							}
+						} else {
+							return results;
+						}
+
+					// Element context
+					} else {
+
+						// Support: IE, Opera, Webkit
+						// TODO: identify versions
+						// getElementById can match elements by name instead of ID
+						if ( newContext && (elem = newContext.getElementById( m )) &&
+							contains( context, elem ) &&
+							elem.id === m ) {
+
+							results.push( elem );
+							return results;
+						}
+					}
+
+				// Type selector
+				} else if ( match[2] ) {
+					push.apply( results, context.getElementsByTagName( selector ) );
+					return results;
+
+				// Class selector
+				} else if ( (m = match[3]) && support.getElementsByClassName &&
+					context.getElementsByClassName ) {
+
+					push.apply( results, context.getElementsByClassName( m ) );
+					return results;
+				}
+			}
+
+			// Take advantage of querySelectorAll
+			if ( support.qsa &&
+				!nonnativeSelectorCache[ selector + " " ] &&
+				(!rbuggyQSA || !rbuggyQSA.test( selector )) &&
+
+				// Support: IE 8 only
+				// Exclude object elements
+				(nodeType !== 1 || context.nodeName.toLowerCase() !== "object") ) {
+
+				newSelector = selector;
+				newContext = context;
+
+				// qSA considers elements outside a scoping root when evaluating child or
+				// descendant combinators, which is not what we want.
+				// In such cases, we work around the behavior by prefixing every selector in the
+				// list with an ID selector referencing the scope context.
+				// Thanks to Andrew Dupont for this technique.
+				if ( nodeType === 1 && rdescend.test( selector ) ) {
+
+					// Capture the context ID, setting it first if necessary
+					if ( (nid = context.getAttribute( "id" )) ) {
+						nid = nid.replace( rcssescape, fcssescape );
+					} else {
+						context.setAttribute( "id", (nid = expando) );
+					}
+
+					// Prefix every selector in the list
+					groups = tokenize( selector );
+					i = groups.length;
+					while ( i-- ) {
+						groups[i] = "#" + nid + " " + toSelector( groups[i] );
+					}
+					newSelector = groups.join( "," );
+
+					// Expand context for sibling selectors
+					newContext = rsibling.test( selector ) && testContext( context.parentNode ) ||
+						context;
+				}
+
+				try {
+					push.apply( results,
+						newContext.querySelectorAll( newSelector )
+					);
+					return results;
+				} catch ( qsaError ) {
+					nonnativeSelectorCache( selector, true );
+				} finally {
+					if ( nid === expando ) {
+						context.removeAttribute( "id" );
+					}
+				}
+			}
+		}
+	}
+
+	// All others
+	return select( selector.replace( rtrim, "$1" ), context, results, seed );
+}
+
+/**
+ * Create key-value caches of limited size
+ * @returns {function(string, object)} Returns the Object data after storing it on itself with
+ *	property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength)
+ *	deleting the oldest entry
+ */
+function createCache() {
+	var keys = [];
+
+	function cache( key, value ) {
+		// Use (key + " ") to avoid collision with native prototype properties (see Issue #157)
+		if ( keys.push( key + " " ) > Expr.cacheLength ) {
+			// Only keep the most recent entries
+			delete cache[ keys.shift() ];
+		}
+		return (cache[ key + " " ] = value);
+	}
+	return cache;
+}
+
+/**
+ * Mark a function for special use by Sizzle
+ * @param {Function} fn The function to mark
+ */
+function markFunction( fn ) {
+	fn[ expando ] = true;
+	return fn;
+}
+
+/**
+ * Support testing using an element
+ * @param {Function} fn Passed the created element and returns a boolean result
+ */
+function assert( fn ) {
+	var el = document.createElement("fieldset");
+
+	try {
+		return !!fn( el );
+	} catch (e) {
+		return false;
+	} finally {
+		// Remove from its parent by default
+		if ( el.parentNode ) {
+			el.parentNode.removeChild( el );
+		}
+		// release memory in IE
+		el = null;
+	}
+}
+
+/**
+ * Adds the same handler for all of the specified attrs
+ * @param {String} attrs Pipe-separated list of attributes
+ * @param {Function} handler The method that will be applied
+ */
+function addHandle( attrs, handler ) {
+	var arr = attrs.split("|"),
+		i = arr.length;
+
+	while ( i-- ) {
+		Expr.attrHandle[ arr[i] ] = handler;
+	}
+}
+
+/**
+ * Checks document order of two siblings
+ * @param {Element} a
+ * @param {Element} b
+ * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b
+ */
+function siblingCheck( a, b ) {
+	var cur = b && a,
+		diff = cur && a.nodeType === 1 && b.nodeType === 1 &&
+			a.sourceIndex - b.sourceIndex;
+
+	// Use IE sourceIndex if available on both nodes
+	if ( diff ) {
+		return diff;
+	}
+
+	// Check if b follows a
+	if ( cur ) {
+		while ( (cur = cur.nextSibling) ) {
+			if ( cur === b ) {
+				return -1;
+			}
+		}
+	}
+
+	return a ? 1 : -1;
+}
+
+/**
+ * Returns a function to use in pseudos for input types
+ * @param {String} type
+ */
+function createInputPseudo( type ) {
+	return function( elem ) {
+		var name = elem.nodeName.toLowerCase();
+		return name === "input" && elem.type === type;
+	};
+}
+
+/**
+ * Returns a function to use in pseudos for buttons
+ * @param {String} type
+ */
+function createButtonPseudo( type ) {
+	return function( elem ) {
+		var name = elem.nodeName.toLowerCase();
+		return (name === "input" || name === "button") && elem.type === type;
+	};
+}
+
+/**
+ * Returns a function to use in pseudos for :enabled/:disabled
+ * @param {Boolean} disabled true for :disabled; false for :enabled
+ */
+function createDisabledPseudo( disabled ) {
+
+	// Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable
+	return function( elem ) {
+
+		// Only certain elements can match :enabled or :disabled
+		// https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled
+		// https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled
+		if ( "form" in elem ) {
+
+			// Check for inherited disabledness on relevant non-disabled elements:
+			// * listed form-associated elements in a disabled fieldset
+			//   https://html.spec.whatwg.org/multipage/forms.html#category-listed
+			//   https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled
+			// * option elements in a disabled optgroup
+			//   https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled
+			// All such elements have a "form" property.
+			if ( elem.parentNode && elem.disabled === false ) {
+
+				// Option elements defer to a parent optgroup if present
+				if ( "label" in elem ) {
+					if ( "label" in elem.parentNode ) {
+						return elem.parentNode.disabled === disabled;
+					} else {
+						return elem.disabled === disabled;
+					}
+				}
+
+				// Support: IE 6 - 11
+				// Use the isDisabled shortcut property to check for disabled fieldset ancestors
+				return elem.isDisabled === disabled ||
+
+					// Where there is no isDisabled, check manually
+					/* jshint -W018 */
+					elem.isDisabled !== !disabled &&
+						inDisabledFieldset( elem ) === disabled;
+			}
+
+			return elem.disabled === disabled;
+
+		// Try to winnow out elements that can't be disabled before trusting the disabled property.
+		// Some victims get caught in our net (label, legend, menu, track), but it shouldn't
+		// even exist on them, let alone have a boolean value.
+		} else if ( "label" in elem ) {
+			return elem.disabled === disabled;
+		}
+
+		// Remaining elements are neither :enabled nor :disabled
+		return false;
+	};
+}
+
+/**
+ * Returns a function to use in pseudos for positionals
+ * @param {Function} fn
+ */
+function createPositionalPseudo( fn ) {
+	return markFunction(function( argument ) {
+		argument = +argument;
+		return markFunction(function( seed, matches ) {
+			var j,
+				matchIndexes = fn( [], seed.length, argument ),
+				i = matchIndexes.length;
+
+			// Match elements found at the specified indexes
+			while ( i-- ) {
+				if ( seed[ (j = matchIndexes[i]) ] ) {
+					seed[j] = !(matches[j] = seed[j]);
+				}
+			}
+		});
+	});
+}
+
+/**
+ * Checks a node for validity as a Sizzle context
+ * @param {Element|Object=} context
+ * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value
+ */
+function testContext( context ) {
+	return context && typeof context.getElementsByTagName !== "undefined" && context;
+}
+
+// Expose support vars for convenience
+support = Sizzle.support = {};
+
+/**
+ * Detects XML nodes
+ * @param {Element|Object} elem An element or a document
+ * @returns {Boolean} True iff elem is a non-HTML XML node
+ */
+isXML = Sizzle.isXML = function( elem ) {
+	var namespace = elem.namespaceURI,
+		docElem = (elem.ownerDocument || elem).documentElement;
+
+	// Support: IE <=8
+	// Assume HTML when documentElement doesn't yet exist, such as inside loading iframes
+	// https://bugs.jquery.com/ticket/4833
+	return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" );
+};
+
+/**
+ * Sets document-related variables once based on the current document
+ * @param {Element|Object} [doc] An element or document object to use to set the document
+ * @returns {Object} Returns the current document
+ */
+setDocument = Sizzle.setDocument = function( node ) {
+	var hasCompare, subWindow,
+		doc = node ? node.ownerDocument || node : preferredDoc;
+
+	// Return early if doc is invalid or already selected
+	if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) {
+		return document;
+	}
+
+	// Update global variables
+	document = doc;
+	docElem = document.documentElement;
+	documentIsHTML = !isXML( document );
+
+	// Support: IE 9-11, Edge
+	// Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936)
+	if ( preferredDoc !== document &&
+		(subWindow = document.defaultView) && subWindow.top !== subWindow ) {
+
+		// Support: IE 11, Edge
+		if ( subWindow.addEventListener ) {
+			subWindow.addEventListener( "unload", unloadHandler, false );
+
+		// Support: IE 9 - 10 only
+		} else if ( subWindow.attachEvent ) {
+			subWindow.attachEvent( "onunload", unloadHandler );
+		}
+	}
+
+	/* Attributes
+	---------------------------------------------------------------------- */
+
+	// Support: IE<8
+	// Verify that getAttribute really returns attributes and not properties
+	// (excepting IE8 booleans)
+	support.attributes = assert(function( el ) {
+		el.className = "i";
+		return !el.getAttribute("className");
+	});
+
+	/* getElement(s)By*
+	---------------------------------------------------------------------- */
+
+	// Check if getElementsByTagName("*") returns only elements
+	support.getElementsByTagName = assert(function( el ) {
+		el.appendChild( document.createComment("") );
+		return !el.getElementsByTagName("*").length;
+	});
+
+	// Support: IE<9
+	support.getElementsByClassName = rnative.test( document.getElementsByClassName );
+
+	// Support: IE<10
+	// Check if getElementById returns elements by name
+	// The broken getElementById methods don't pick up programmatically-set names,
+	// so use a roundabout getElementsByName test
+	support.getById = assert(function( el ) {
+		docElem.appendChild( el ).id = expando;
+		return !document.getElementsByName || !document.getElementsByName( expando ).length;
+	});
+
+	// ID filter and find
+	if ( support.getById ) {
+		Expr.filter["ID"] = function( id ) {
+			var attrId = id.replace( runescape, funescape );
+			return function( elem ) {
+				return elem.getAttribute("id") === attrId;
+			};
+		};
+		Expr.find["ID"] = function( id, context ) {
+			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
+				var elem = context.getElementById( id );
+				return elem ? [ elem ] : [];
+			}
+		};
+	} else {
+		Expr.filter["ID"] =  function( id ) {
+			var attrId = id.replace( runescape, funescape );
+			return function( elem ) {
+				var node = typeof elem.getAttributeNode !== "undefined" &&
+					elem.getAttributeNode("id");
+				return node && node.value === attrId;
+			};
+		};
+
+		// Support: IE 6 - 7 only
+		// getElementById is not reliable as a find shortcut
+		Expr.find["ID"] = function( id, context ) {
+			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
+				var node, i, elems,
+					elem = context.getElementById( id );
+
+				if ( elem ) {
+
+					// Verify the id attribute
+					node = elem.getAttributeNode("id");
+					if ( node && node.value === id ) {
+						return [ elem ];
+					}
+
+					// Fall back on getElementsByName
+					elems = context.getElementsByName( id );
+					i = 0;
+					while ( (elem = elems[i++]) ) {
+						node = elem.getAttributeNode("id");
+						if ( node && node.value === id ) {
+							return [ elem ];
+						}
+					}
+				}
+
+				return [];
+			}
+		};
+	}
+
+	// Tag
+	Expr.find["TAG"] = support.getElementsByTagName ?
+		function( tag, context ) {
+			if ( typeof context.getElementsByTagName !== "undefined" ) {
+				return context.getElementsByTagName( tag );
+
+			// DocumentFragment nodes don't have gEBTN
+			} else if ( support.qsa ) {
+				return context.querySelectorAll( tag );
+			}
+		} :
+
+		function( tag, context ) {
+			var elem,
+				tmp = [],
+				i = 0,
+				// By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too
+				results = context.getElementsByTagName( tag );
+
+			// Filter out possible comments
+			if ( tag === "*" ) {
+				while ( (elem = results[i++]) ) {
+					if ( elem.nodeType === 1 ) {
+						tmp.push( elem );
+					}
+				}
+
+				return tmp;
+			}
+			return results;
+		};
+
+	// Class
+	Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) {
+		if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) {
+			return context.getElementsByClassName( className );
+		}
+	};
+
+	/* QSA/matchesSelector
+	---------------------------------------------------------------------- */
+
+	// QSA and matchesSelector support
+
+	// matchesSelector(:active) reports false when true (IE9/Opera 11.5)
+	rbuggyMatches = [];
+
+	// qSa(:focus) reports false when true (Chrome 21)
+	// We allow this because of a bug in IE8/9 that throws an error
+	// whenever `document.activeElement` is accessed on an iframe
+	// So, we allow :focus to pass through QSA all the time to avoid the IE error
+	// See https://bugs.jquery.com/ticket/13378
+	rbuggyQSA = [];
+
+	if ( (support.qsa = rnative.test( document.querySelectorAll )) ) {
+		// Build QSA regex
+		// Regex strategy adopted from Diego Perini
+		assert(function( el ) {
+			// Select is set to empty string on purpose
+			// This is to test IE's treatment of not explicitly
+			// setting a boolean content attribute,
+			// since its presence should be enough
+			// https://bugs.jquery.com/ticket/12359
+			docElem.appendChild( el ).innerHTML = "<a id='" + expando + "'></a>" +
+				"<select id='" + expando + "-\r\\' msallowcapture=''>" +
+				"<option selected=''></option></select>";
+
+			// Support: IE8, Opera 11-12.16
+			// Nothing should be selected when empty strings follow ^= or $= or *=
+			// The test attribute must be unknown in Opera but "safe" for WinRT
+			// https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section
+			if ( el.querySelectorAll("[msallowcapture^='']").length ) {
+				rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" );
+			}
+
+			// Support: IE8
+			// Boolean attributes and "value" are not treated correctly
+			if ( !el.querySelectorAll("[selected]").length ) {
+				rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" );
+			}
+
+			// Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+
+			if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) {
+				rbuggyQSA.push("~=");
+			}
+
+			// Webkit/Opera - :checked should return selected option elements
+			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
+			// IE8 throws error here and will not see later tests
+			if ( !el.querySelectorAll(":checked").length ) {
+				rbuggyQSA.push(":checked");
+			}
+
+			// Support: Safari 8+, iOS 8+
+			// https://bugs.webkit.org/show_bug.cgi?id=136851
+			// In-page `selector#id sibling-combinator selector` fails
+			if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) {
+				rbuggyQSA.push(".#.+[+~]");
+			}
+		});
+
+		assert(function( el ) {
+			el.innerHTML = "<a href='' disabled='disabled'></a>" +
+				"<select disabled='disabled'><option/></select>";
+
+			// Support: Windows 8 Native Apps
+			// The type and name attributes are restricted during .innerHTML assignment
+			var input = document.createElement("input");
+			input.setAttribute( "type", "hidden" );
+			el.appendChild( input ).setAttribute( "name", "D" );
+
+			// Support: IE8
+			// Enforce case-sensitivity of name attribute
+			if ( el.querySelectorAll("[name=d]").length ) {
+				rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" );
+			}
+
+			// FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled)
+			// IE8 throws error here and will not see later tests
+			if ( el.querySelectorAll(":enabled").length !== 2 ) {
+				rbuggyQSA.push( ":enabled", ":disabled" );
+			}
+
+			// Support: IE9-11+
+			// IE's :disabled selector does not pick up the children of disabled fieldsets
+			docElem.appendChild( el ).disabled = true;
+			if ( el.querySelectorAll(":disabled").length !== 2 ) {
+				rbuggyQSA.push( ":enabled", ":disabled" );
+			}
+
+			// Opera 10-11 does not throw on post-comma invalid pseudos
+			el.querySelectorAll("*,:x");
+			rbuggyQSA.push(",.*:");
+		});
+	}
+
+	if ( (support.matchesSelector = rnative.test( (matches = docElem.matches ||
+		docElem.webkitMatchesSelector ||
+		docElem.mozMatchesSelector ||
+		docElem.oMatchesSelector ||
+		docElem.msMatchesSelector) )) ) {
+
+		assert(function( el ) {
+			// Check to see if it's possible to do matchesSelector
+			// on a disconnected node (IE 9)
+			support.disconnectedMatch = matches.call( el, "*" );
+
+			// This should fail with an exception
+			// Gecko does not error, returns false instead
+			matches.call( el, "[s!='']:x" );
+			rbuggyMatches.push( "!=", pseudos );
+		});
+	}
+
+	rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") );
+	rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") );
+
+	/* Contains
+	---------------------------------------------------------------------- */
+	hasCompare = rnative.test( docElem.compareDocumentPosition );
+
+	// Element contains another
+	// Purposefully self-exclusive
+	// As in, an element does not contain itself
+	contains = hasCompare || rnative.test( docElem.contains ) ?
+		function( a, b ) {
+			var adown = a.nodeType === 9 ? a.documentElement : a,
+				bup = b && b.parentNode;
+			return a === bup || !!( bup && bup.nodeType === 1 && (
+				adown.contains ?
+					adown.contains( bup ) :
+					a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16
+			));
+		} :
+		function( a, b ) {
+			if ( b ) {
+				while ( (b = b.parentNode) ) {
+					if ( b === a ) {
+						return true;
+					}
+				}
+			}
+			return false;
+		};
+
+	/* Sorting
+	---------------------------------------------------------------------- */
+
+	// Document order sorting
+	sortOrder = hasCompare ?
+	function( a, b ) {
+
+		// Flag for duplicate removal
+		if ( a === b ) {
+			hasDuplicate = true;
+			return 0;
+		}
+
+		// Sort on method existence if only one input has compareDocumentPosition
+		var compare = !a.compareDocumentPosition - !b.compareDocumentPosition;
+		if ( compare ) {
+			return compare;
+		}
+
+		// Calculate position if both inputs belong to the same document
+		compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ?
+			a.compareDocumentPosition( b ) :
+
+			// Otherwise we know they are disconnected
+			1;
+
+		// Disconnected nodes
+		if ( compare & 1 ||
+			(!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) {
+
+			// Choose the first element that is related to our preferred document
+			if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) {
+				return -1;
+			}
+			if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) {
+				return 1;
+			}
+
+			// Maintain original order
+			return sortInput ?
+				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
+				0;
+		}
+
+		return compare & 4 ? -1 : 1;
+	} :
+	function( a, b ) {
+		// Exit early if the nodes are identical
+		if ( a === b ) {
+			hasDuplicate = true;
+			return 0;
+		}
+
+		var cur,
+			i = 0,
+			aup = a.parentNode,
+			bup = b.parentNode,
+			ap = [ a ],
+			bp = [ b ];
+
+		// Parentless nodes are either documents or disconnected
+		if ( !aup || !bup ) {
+			return a === document ? -1 :
+				b === document ? 1 :
+				aup ? -1 :
+				bup ? 1 :
+				sortInput ?
+				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
+				0;
+
+		// If the nodes are siblings, we can do a quick check
+		} else if ( aup === bup ) {
+			return siblingCheck( a, b );
+		}
+
+		// Otherwise we need full lists of their ancestors for comparison
+		cur = a;
+		while ( (cur = cur.parentNode) ) {
+			ap.unshift( cur );
+		}
+		cur = b;
+		while ( (cur = cur.parentNode) ) {
+			bp.unshift( cur );
+		}
+
+		// Walk down the tree looking for a discrepancy
+		while ( ap[i] === bp[i] ) {
+			i++;
+		}
+
+		return i ?
+			// Do a sibling check if the nodes have a common ancestor
+			siblingCheck( ap[i], bp[i] ) :
+
+			// Otherwise nodes in our document sort first
+			ap[i] === preferredDoc ? -1 :
+			bp[i] === preferredDoc ? 1 :
+			0;
+	};
+
+	return document;
+};
+
+Sizzle.matches = function( expr, elements ) {
+	return Sizzle( expr, null, null, elements );
+};
+
+Sizzle.matchesSelector = function( elem, expr ) {
+	// Set document vars if needed
+	if ( ( elem.ownerDocument || elem ) !== document ) {
+		setDocument( elem );
+	}
+
+	if ( support.matchesSelector && documentIsHTML &&
+		!nonnativeSelectorCache[ expr + " " ] &&
+		( !rbuggyMatches || !rbuggyMatches.test( expr ) ) &&
+		( !rbuggyQSA     || !rbuggyQSA.test( expr ) ) ) {
+
+		try {
+			var ret = matches.call( elem, expr );
+
+			// IE 9's matchesSelector returns false on disconnected nodes
+			if ( ret || support.disconnectedMatch ||
+					// As well, disconnected nodes are said to be in a document
+					// fragment in IE 9
+					elem.document && elem.document.nodeType !== 11 ) {
+				return ret;
+			}
+		} catch (e) {
+			nonnativeSelectorCache( expr, true );
+		}
+	}
+
+	return Sizzle( expr, document, null, [ elem ] ).length > 0;
+};
+
+Sizzle.contains = function( context, elem ) {
+	// Set document vars if needed
+	if ( ( context.ownerDocument || context ) !== document ) {
+		setDocument( context );
+	}
+	return contains( context, elem );
+};
+
+Sizzle.attr = function( elem, name ) {
+	// Set document vars if needed
+	if ( ( elem.ownerDocument || elem ) !== document ) {
+		setDocument( elem );
+	}
+
+	var fn = Expr.attrHandle[ name.toLowerCase() ],
+		// Don't get fooled by Object.prototype properties (jQuery #13807)
+		val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ?
+			fn( elem, name, !documentIsHTML ) :
+			undefined;
+
+	return val !== undefined ?
+		val :
+		support.attributes || !documentIsHTML ?
+			elem.getAttribute( name ) :
+			(val = elem.getAttributeNode(name)) && val.specified ?
+				val.value :
+				null;
+};
+
+Sizzle.escape = function( sel ) {
+	return (sel + "").replace( rcssescape, fcssescape );
+};
+
+Sizzle.error = function( msg ) {
+	throw new Error( "Syntax error, unrecognized expression: " + msg );
+};
+
+/**
+ * Document sorting and removing duplicates
+ * @param {ArrayLike} results
+ */
+Sizzle.uniqueSort = function( results ) {
+	var elem,
+		duplicates = [],
+		j = 0,
+		i = 0;
+
+	// Unless we *know* we can detect duplicates, assume their presence
+	hasDuplicate = !support.detectDuplicates;
+	sortInput = !support.sortStable && results.slice( 0 );
+	results.sort( sortOrder );
+
+	if ( hasDuplicate ) {
+		while ( (elem = results[i++]) ) {
+			if ( elem === results[ i ] ) {
+				j = duplicates.push( i );
+			}
+		}
+		while ( j-- ) {
+			results.splice( duplicates[ j ], 1 );
+		}
+	}
+
+	// Clear input after sorting to release objects
+	// See https://github.com/jquery/sizzle/pull/225
+	sortInput = null;
+
+	return results;
+};
+
+/**
+ * Utility function for retrieving the text value of an array of DOM nodes
+ * @param {Array|Element} elem
+ */
+getText = Sizzle.getText = function( elem ) {
+	var node,
+		ret = "",
+		i = 0,
+		nodeType = elem.nodeType;
+
+	if ( !nodeType ) {
+		// If no nodeType, this is expected to be an array
+		while ( (node = elem[i++]) ) {
+			// Do not traverse comment nodes
+			ret += getText( node );
+		}
+	} else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) {
+		// Use textContent for elements
+		// innerText usage removed for consistency of new lines (jQuery #11153)
+		if ( typeof elem.textContent === "string" ) {
+			return elem.textContent;
+		} else {
+			// Traverse its children
+			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
+				ret += getText( elem );
+			}
+		}
+	} else if ( nodeType === 3 || nodeType === 4 ) {
+		return elem.nodeValue;
+	}
+	// Do not include comment or processing instruction nodes
+
+	return ret;
+};
+
+Expr = Sizzle.selectors = {
+
+	// Can be adjusted by the user
+	cacheLength: 50,
+
+	createPseudo: markFunction,
+
+	match: matchExpr,
+
+	attrHandle: {},
+
+	find: {},
+
+	relative: {
+		">": { dir: "parentNode", first: true },
+		" ": { dir: "parentNode" },
+		"+": { dir: "previousSibling", first: true },
+		"~": { dir: "previousSibling" }
+	},
+
+	preFilter: {
+		"ATTR": function( match ) {
+			match[1] = match[1].replace( runescape, funescape );
+
+			// Move the given value to match[3] whether quoted or unquoted
+			match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape );
+
+			if ( match[2] === "~=" ) {
+				match[3] = " " + match[3] + " ";
+			}
+
+			return match.slice( 0, 4 );
+		},
+
+		"CHILD": function( match ) {
+			/* matches from matchExpr["CHILD"]
+				1 type (only|nth|...)
+				2 what (child|of-type)
+				3 argument (even|odd|\d*|\d*n([+-]\d+)?|...)
+				4 xn-component of xn+y argument ([+-]?\d*n|)
+				5 sign of xn-component
+				6 x of xn-component
+				7 sign of y-component
+				8 y of y-component
+			*/
+			match[1] = match[1].toLowerCase();
+
+			if ( match[1].slice( 0, 3 ) === "nth" ) {
+				// nth-* requires argument
+				if ( !match[3] ) {
+					Sizzle.error( match[0] );
+				}
+
+				// numeric x and y parameters for Expr.filter.CHILD
+				// remember that false/true cast respectively to 0/1
+				match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) );
+				match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" );
+
+			// other types prohibit arguments
+			} else if ( match[3] ) {
+				Sizzle.error( match[0] );
+			}
+
+			return match;
+		},
+
+		"PSEUDO": function( match ) {
+			var excess,
+				unquoted = !match[6] && match[2];
+
+			if ( matchExpr["CHILD"].test( match[0] ) ) {
+				return null;
+			}
+
+			// Accept quoted arguments as-is
+			if ( match[3] ) {
+				match[2] = match[4] || match[5] || "";
+
+			// Strip excess characters from unquoted arguments
+			} else if ( unquoted && rpseudo.test( unquoted ) &&
+				// Get excess from tokenize (recursively)
+				(excess = tokenize( unquoted, true )) &&
+				// advance to the next closing parenthesis
+				(excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) {
+
+				// excess is a negative index
+				match[0] = match[0].slice( 0, excess );
+				match[2] = unquoted.slice( 0, excess );
+			}
+
+			// Return only captures needed by the pseudo filter method (type and argument)
+			return match.slice( 0, 3 );
+		}
+	},
+
+	filter: {
+
+		"TAG": function( nodeNameSelector ) {
+			var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase();
+			return nodeNameSelector === "*" ?
+				function() { return true; } :
+				function( elem ) {
+					return elem.nodeName && elem.nodeName.toLowerCase() === nodeName;
+				};
+		},
+
+		"CLASS": function( className ) {
+			var pattern = classCache[ className + " " ];
+
+			return pattern ||
+				(pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) &&
+				classCache( className, function( elem ) {
+					return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" );
+				});
+		},
+
+		"ATTR": function( name, operator, check ) {
+			return function( elem ) {
+				var result = Sizzle.attr( elem, name );
+
+				if ( result == null ) {
+					return operator === "!=";
+				}
+				if ( !operator ) {
+					return true;
+				}
+
+				result += "";
+
+				return operator === "=" ? result === check :
+					operator === "!=" ? result !== check :
+					operator === "^=" ? check && result.indexOf( check ) === 0 :
+					operator === "*=" ? check && result.indexOf( check ) > -1 :
+					operator === "$=" ? check && result.slice( -check.length ) === check :
+					operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 :
+					operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" :
+					false;
+			};
+		},
+
+		"CHILD": function( type, what, argument, first, last ) {
+			var simple = type.slice( 0, 3 ) !== "nth",
+				forward = type.slice( -4 ) !== "last",
+				ofType = what === "of-type";
+
+			return first === 1 && last === 0 ?
+
+				// Shortcut for :nth-*(n)
+				function( elem ) {
+					return !!elem.parentNode;
+				} :
+
+				function( elem, context, xml ) {
+					var cache, uniqueCache, outerCache, node, nodeIndex, start,
+						dir = simple !== forward ? "nextSibling" : "previousSibling",
+						parent = elem.parentNode,
+						name = ofType && elem.nodeName.toLowerCase(),
+						useCache = !xml && !ofType,
+						diff = false;
+
+					if ( parent ) {
+
+						// :(first|last|only)-(child|of-type)
+						if ( simple ) {
+							while ( dir ) {
+								node = elem;
+								while ( (node = node[ dir ]) ) {
+									if ( ofType ?
+										node.nodeName.toLowerCase() === name :
+										node.nodeType === 1 ) {
+
+										return false;
+									}
+								}
+								// Reverse direction for :only-* (if we haven't yet done so)
+								start = dir = type === "only" && !start && "nextSibling";
+							}
+							return true;
+						}
+
+						start = [ forward ? parent.firstChild : parent.lastChild ];
+
+						// non-xml :nth-child(...) stores cache data on `parent`
+						if ( forward && useCache ) {
+
+							// Seek `elem` from a previously-cached index
+
+							// ...in a gzip-friendly way
+							node = parent;
+							outerCache = node[ expando ] || (node[ expando ] = {});
+
+							// Support: IE <9 only
+							// Defend against cloned attroperties (jQuery gh-1709)
+							uniqueCache = outerCache[ node.uniqueID ] ||
+								(outerCache[ node.uniqueID ] = {});
+
+							cache = uniqueCache[ type ] || [];
+							nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
+							diff = nodeIndex && cache[ 2 ];
+							node = nodeIndex && parent.childNodes[ nodeIndex ];
+
+							while ( (node = ++nodeIndex && node && node[ dir ] ||
+
+								// Fallback to seeking `elem` from the start
+								(diff = nodeIndex = 0) || start.pop()) ) {
+
+								// When found, cache indexes on `parent` and break
+								if ( node.nodeType === 1 && ++diff && node === elem ) {
+									uniqueCache[ type ] = [ dirruns, nodeIndex, diff ];
+									break;
+								}
+							}
+
+						} else {
+							// Use previously-cached element index if available
+							if ( useCache ) {
+								// ...in a gzip-friendly way
+								node = elem;
+								outerCache = node[ expando ] || (node[ expando ] = {});
+
+								// Support: IE <9 only
+								// Defend against cloned attroperties (jQuery gh-1709)
+								uniqueCache = outerCache[ node.uniqueID ] ||
+									(outerCache[ node.uniqueID ] = {});
+
+								cache = uniqueCache[ type ] || [];
+								nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
+								diff = nodeIndex;
+							}
+
+							// xml :nth-child(...)
+							// or :nth-last-child(...) or :nth(-last)?-of-type(...)
+							if ( diff === false ) {
+								// Use the same loop as above to seek `elem` from the start
+								while ( (node = ++nodeIndex && node && node[ dir ] ||
+									(diff = nodeIndex = 0) || start.pop()) ) {
+
+									if ( ( ofType ?
+										node.nodeName.toLowerCase() === name :
+										node.nodeType === 1 ) &&
+										++diff ) {
+
+										// Cache the index of each encountered element
+										if ( useCache ) {
+											outerCache = node[ expando ] || (node[ expando ] = {});
+
+											// Support: IE <9 only
+											// Defend against cloned attroperties (jQuery gh-1709)
+											uniqueCache = outerCache[ node.uniqueID ] ||
+												(outerCache[ node.uniqueID ] = {});
+
+											uniqueCache[ type ] = [ dirruns, diff ];
+										}
+
+										if ( node === elem ) {
+											break;
+										}
+									}
+								}
+							}
+						}
+
+						// Incorporate the offset, then check against cycle size
+						diff -= last;
+						return diff === first || ( diff % first === 0 && diff / first >= 0 );
+					}
+				};
+		},
+
+		"PSEUDO": function( pseudo, argument ) {
+			// pseudo-class names are case-insensitive
+			// http://www.w3.org/TR/selectors/#pseudo-classes
+			// Prioritize by case sensitivity in case custom pseudos are added with uppercase letters
+			// Remember that setFilters inherits from pseudos
+			var args,
+				fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] ||
+					Sizzle.error( "unsupported pseudo: " + pseudo );
+
+			// The user may use createPseudo to indicate that
+			// arguments are needed to create the filter function
+			// just as Sizzle does
+			if ( fn[ expando ] ) {
+				return fn( argument );
+			}
+
+			// But maintain support for old signatures
+			if ( fn.length > 1 ) {
+				args = [ pseudo, pseudo, "", argument ];
+				return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ?
+					markFunction(function( seed, matches ) {
+						var idx,
+							matched = fn( seed, argument ),
+							i = matched.length;
+						while ( i-- ) {
+							idx = indexOf( seed, matched[i] );
+							seed[ idx ] = !( matches[ idx ] = matched[i] );
+						}
+					}) :
+					function( elem ) {
+						return fn( elem, 0, args );
+					};
+			}
+
+			return fn;
+		}
+	},
+
+	pseudos: {
+		// Potentially complex pseudos
+		"not": markFunction(function( selector ) {
+			// Trim the selector passed to compile
+			// to avoid treating leading and trailing
+			// spaces as combinators
+			var input = [],
+				results = [],
+				matcher = compile( selector.replace( rtrim, "$1" ) );
+
+			return matcher[ expando ] ?
+				markFunction(function( seed, matches, context, xml ) {
+					var elem,
+						unmatched = matcher( seed, null, xml, [] ),
+						i = seed.length;
+
+					// Match elements unmatched by `matcher`
+					while ( i-- ) {
+						if ( (elem = unmatched[i]) ) {
+							seed[i] = !(matches[i] = elem);
+						}
+					}
+				}) :
+				function( elem, context, xml ) {
+					input[0] = elem;
+					matcher( input, null, xml, results );
+					// Don't keep the element (issue #299)
+					input[0] = null;
+					return !results.pop();
+				};
+		}),
+
+		"has": markFunction(function( selector ) {
+			return function( elem ) {
+				return Sizzle( selector, elem ).length > 0;
+			};
+		}),
+
+		"contains": markFunction(function( text ) {
+			text = text.replace( runescape, funescape );
+			return function( elem ) {
+				return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1;
+			};
+		}),
+
+		// "Whether an element is represented by a :lang() selector
+		// is based solely on the element's language value
+		// being equal to the identifier C,
+		// or beginning with the identifier C immediately followed by "-".
+		// The matching of C against the element's language value is performed case-insensitively.
+		// The identifier C does not have to be a valid language name."
+		// http://www.w3.org/TR/selectors/#lang-pseudo
+		"lang": markFunction( function( lang ) {
+			// lang value must be a valid identifier
+			if ( !ridentifier.test(lang || "") ) {
+				Sizzle.error( "unsupported lang: " + lang );
+			}
+			lang = lang.replace( runescape, funescape ).toLowerCase();
+			return function( elem ) {
+				var elemLang;
+				do {
+					if ( (elemLang = documentIsHTML ?
+						elem.lang :
+						elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) {
+
+						elemLang = elemLang.toLowerCase();
+						return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0;
+					}
+				} while ( (elem = elem.parentNode) && elem.nodeType === 1 );
+				return false;
+			};
+		}),
+
+		// Miscellaneous
+		"target": function( elem ) {
+			var hash = window.location && window.location.hash;
+			return hash && hash.slice( 1 ) === elem.id;
+		},
+
+		"root": function( elem ) {
+			return elem === docElem;
+		},
+
+		"focus": function( elem ) {
+			return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex);
+		},
+
+		// Boolean properties
+		"enabled": createDisabledPseudo( false ),
+		"disabled": createDisabledPseudo( true ),
+
+		"checked": function( elem ) {
+			// In CSS3, :checked should return both checked and selected elements
+			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
+			var nodeName = elem.nodeName.toLowerCase();
+			return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected);
+		},
+
+		"selected": function( elem ) {
+			// Accessing this property makes selected-by-default
+			// options in Safari work properly
+			if ( elem.parentNode ) {
+				elem.parentNode.selectedIndex;
+			}
+
+			return elem.selected === true;
+		},
+
+		// Contents
+		"empty": function( elem ) {
+			// http://www.w3.org/TR/selectors/#empty-pseudo
+			// :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5),
+			//   but not by others (comment: 8; processing instruction: 7; etc.)
+			// nodeType < 6 works because attributes (2) do not appear as children
+			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
+				if ( elem.nodeType < 6 ) {
+					return false;
+				}
+			}
+			return true;
+		},
+
+		"parent": function( elem ) {
+			return !Expr.pseudos["empty"]( elem );
+		},
+
+		// Element/input types
+		"header": function( elem ) {
+			return rheader.test( elem.nodeName );
+		},
+
+		"input": function( elem ) {
+			return rinputs.test( elem.nodeName );
+		},
+
+		"button": function( elem ) {
+			var name = elem.nodeName.toLowerCase();
+			return name === "input" && elem.type === "button" || name === "button";
+		},
+
+		"text": function( elem ) {
+			var attr;
+			return elem.nodeName.toLowerCase() === "input" &&
+				elem.type === "text" &&
+
+				// Support: IE<8
+				// New HTML5 attribute values (e.g., "search") appear with elem.type === "text"
+				( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" );
+		},
+
+		// Position-in-collection
+		"first": createPositionalPseudo(function() {
+			return [ 0 ];
+		}),
+
+		"last": createPositionalPseudo(function( matchIndexes, length ) {
+			return [ length - 1 ];
+		}),
+
+		"eq": createPositionalPseudo(function( matchIndexes, length, argument ) {
+			return [ argument < 0 ? argument + length : argument ];
+		}),
+
+		"even": createPositionalPseudo(function( matchIndexes, length ) {
+			var i = 0;
+			for ( ; i < length; i += 2 ) {
+				matchIndexes.push( i );
+			}
+			return matchIndexes;
+		}),
+
+		"odd": createPositionalPseudo(function( matchIndexes, length ) {
+			var i = 1;
+			for ( ; i < length; i += 2 ) {
+				matchIndexes.push( i );
+			}
+			return matchIndexes;
+		}),
+
+		"lt": createPositionalPseudo(function( matchIndexes, length, argument ) {
+			var i = argument < 0 ?
+				argument + length :
+				argument > length ?
+					length :
+					argument;
+			for ( ; --i >= 0; ) {
+				matchIndexes.push( i );
+			}
+			return matchIndexes;
+		}),
+
+		"gt": createPositionalPseudo(function( matchIndexes, length, argument ) {
+			var i = argument < 0 ? argument + length : argument;
+			for ( ; ++i < length; ) {
+				matchIndexes.push( i );
+			}
+			return matchIndexes;
+		})
+	}
+};
+
+Expr.pseudos["nth"] = Expr.pseudos["eq"];
+
+// Add button/input type pseudos
+for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) {
+	Expr.pseudos[ i ] = createInputPseudo( i );
+}
+for ( i in { submit: true, reset: true } ) {
+	Expr.pseudos[ i ] = createButtonPseudo( i );
+}
+
+// Easy API for creating new setFilters
+function setFilters() {}
+setFilters.prototype = Expr.filters = Expr.pseudos;
+Expr.setFilters = new setFilters();
+
+tokenize = Sizzle.tokenize = function( selector, parseOnly ) {
+	var matched, match, tokens, type,
+		soFar, groups, preFilters,
+		cached = tokenCache[ selector + " " ];
+
+	if ( cached ) {
+		return parseOnly ? 0 : cached.slice( 0 );
+	}
+
+	soFar = selector;
+	groups = [];
+	preFilters = Expr.preFilter;
+
+	while ( soFar ) {
+
+		// Comma and first run
+		if ( !matched || (match = rcomma.exec( soFar )) ) {
+			if ( match ) {
+				// Don't consume trailing commas as valid
+				soFar = soFar.slice( match[0].length ) || soFar;
+			}
+			groups.push( (tokens = []) );
+		}
+
+		matched = false;
+
+		// Combinators
+		if ( (match = rcombinators.exec( soFar )) ) {
+			matched = match.shift();
+			tokens.push({
+				value: matched,
+				// Cast descendant combinators to space
+				type: match[0].replace( rtrim, " " )
+			});
+			soFar = soFar.slice( matched.length );
+		}
+
+		// Filters
+		for ( type in Expr.filter ) {
+			if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] ||
+				(match = preFilters[ type ]( match ))) ) {
+				matched = match.shift();
+				tokens.push({
+					value: matched,
+					type: type,
+					matches: match
+				});
+				soFar = soFar.slice( matched.length );
+			}
+		}
+
+		if ( !matched ) {
+			break;
+		}
+	}
+
+	// Return the length of the invalid excess
+	// if we're just parsing
+	// Otherwise, throw an error or return tokens
+	return parseOnly ?
+		soFar.length :
+		soFar ?
+			Sizzle.error( selector ) :
+			// Cache the tokens
+			tokenCache( selector, groups ).slice( 0 );
+};
+
+function toSelector( tokens ) {
+	var i = 0,
+		len = tokens.length,
+		selector = "";
+	for ( ; i < len; i++ ) {
+		selector += tokens[i].value;
+	}
+	return selector;
+}
+
+function addCombinator( matcher, combinator, base ) {
+	var dir = combinator.dir,
+		skip = combinator.next,
+		key = skip || dir,
+		checkNonElements = base && key === "parentNode",
+		doneName = done++;
+
+	return combinator.first ?
+		// Check against closest ancestor/preceding element
+		function( elem, context, xml ) {
+			while ( (elem = elem[ dir ]) ) {
+				if ( elem.nodeType === 1 || checkNonElements ) {
+					return matcher( elem, context, xml );
+				}
+			}
+			return false;
+		} :
+
+		// Check against all ancestor/preceding elements
+		function( elem, context, xml ) {
+			var oldCache, uniqueCache, outerCache,
+				newCache = [ dirruns, doneName ];
+
+			// We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching
+			if ( xml ) {
+				while ( (elem = elem[ dir ]) ) {
+					if ( elem.nodeType === 1 || checkNonElements ) {
+						if ( matcher( elem, context, xml ) ) {
+							return true;
+						}
+					}
+				}
+			} else {
+				while ( (elem = elem[ dir ]) ) {
+					if ( elem.nodeType === 1 || checkNonElements ) {
+						outerCache = elem[ expando ] || (elem[ expando ] = {});
+
+						// Support: IE <9 only
+						// Defend against cloned attroperties (jQuery gh-1709)
+						uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {});
+
+						if ( skip && skip === elem.nodeName.toLowerCase() ) {
+							elem = elem[ dir ] || elem;
+						} else if ( (oldCache = uniqueCache[ key ]) &&
+							oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) {
+
+							// Assign to newCache so results back-propagate to previous elements
+							return (newCache[ 2 ] = oldCache[ 2 ]);
+						} else {
+							// Reuse newcache so results back-propagate to previous elements
+							uniqueCache[ key ] = newCache;
+
+							// A match means we're done; a fail means we have to keep checking
+							if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) {
+								return true;
+							}
+						}
+					}
+				}
+			}
+			return false;
+		};
+}
+
+function elementMatcher( matchers ) {
+	return matchers.length > 1 ?
+		function( elem, context, xml ) {
+			var i = matchers.length;
+			while ( i-- ) {
+				if ( !matchers[i]( elem, context, xml ) ) {
+					return false;
+				}
+			}
+			return true;
+		} :
+		matchers[0];
+}
+
+function multipleContexts( selector, contexts, results ) {
+	var i = 0,
+		len = contexts.length;
+	for ( ; i < len; i++ ) {
+		Sizzle( selector, contexts[i], results );
+	}
+	return results;
+}
+
+function condense( unmatched, map, filter, context, xml ) {
+	var elem,
+		newUnmatched = [],
+		i = 0,
+		len = unmatched.length,
+		mapped = map != null;
+
+	for ( ; i < len; i++ ) {
+		if ( (elem = unmatched[i]) ) {
+			if ( !filter || filter( elem, context, xml ) ) {
+				newUnmatched.push( elem );
+				if ( mapped ) {
+					map.push( i );
+				}
+			}
+		}
+	}
+
+	return newUnmatched;
+}
+
+function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) {
+	if ( postFilter && !postFilter[ expando ] ) {
+		postFilter = setMatcher( postFilter );
+	}
+	if ( postFinder && !postFinder[ expando ] ) {
+		postFinder = setMatcher( postFinder, postSelector );
+	}
+	return markFunction(function( seed, results, context, xml ) {
+		var temp, i, elem,
+			preMap = [],
+			postMap = [],
+			preexisting = results.length,
+
+			// Get initial elements from seed or context
+			elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ),
+
+			// Prefilter to get matcher input, preserving a map for seed-results synchronization
+			matcherIn = preFilter && ( seed || !selector ) ?
+				condense( elems, preMap, preFilter, context, xml ) :
+				elems,
+
+			matcherOut = matcher ?
+				// If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results,
+				postFinder || ( seed ? preFilter : preexisting || postFilter ) ?
+
+					// ...intermediate processing is necessary
+					[] :
+
+					// ...otherwise use results directly
+					results :
+				matcherIn;
+
+		// Find primary matches
+		if ( matcher ) {
+			matcher( matcherIn, matcherOut, context, xml );
+		}
+
+		// Apply postFilter
+		if ( postFilter ) {
+			temp = condense( matcherOut, postMap );
+			postFilter( temp, [], context, xml );
+
+			// Un-match failing elements by moving them back to matcherIn
+			i = temp.length;
+			while ( i-- ) {
+				if ( (elem = temp[i]) ) {
+					matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem);
+				}
+			}
+		}
+
+		if ( seed ) {
+			if ( postFinder || preFilter ) {
+				if ( postFinder ) {
+					// Get the final matcherOut by condensing this intermediate into postFinder contexts
+					temp = [];
+					i = matcherOut.length;
+					while ( i-- ) {
+						if ( (elem = matcherOut[i]) ) {
+							// Restore matcherIn since elem is not yet a final match
+							temp.push( (matcherIn[i] = elem) );
+						}
+					}
+					postFinder( null, (matcherOut = []), temp, xml );
+				}
+
+				// Move matched elements from seed to results to keep them synchronized
+				i = matcherOut.length;
+				while ( i-- ) {
+					if ( (elem = matcherOut[i]) &&
+						(temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) {
+
+						seed[temp] = !(results[temp] = elem);
+					}
+				}
+			}
+
+		// Add elements to results, through postFinder if defined
+		} else {
+			matcherOut = condense(
+				matcherOut === results ?
+					matcherOut.splice( preexisting, matcherOut.length ) :
+					matcherOut
+			);
+			if ( postFinder ) {
+				postFinder( null, results, matcherOut, xml );
+			} else {
+				push.apply( results, matcherOut );
+			}
+		}
+	});
+}
+
+function matcherFromTokens( tokens ) {
+	var checkContext, matcher, j,
+		len = tokens.length,
+		leadingRelative = Expr.relative[ tokens[0].type ],
+		implicitRelative = leadingRelative || Expr.relative[" "],
+		i = leadingRelative ? 1 : 0,
+
+		// The foundational matcher ensures that elements are reachable from top-level context(s)
+		matchContext = addCombinator( function( elem ) {
+			return elem === checkContext;
+		}, implicitRelative, true ),
+		matchAnyContext = addCombinator( function( elem ) {
+			return indexOf( checkContext, elem ) > -1;
+		}, implicitRelative, true ),
+		matchers = [ function( elem, context, xml ) {
+			var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || (
+				(checkContext = context).nodeType ?
+					matchContext( elem, context, xml ) :
+					matchAnyContext( elem, context, xml ) );
+			// Avoid hanging onto element (issue #299)
+			checkContext = null;
+			return ret;
+		} ];
+
+	for ( ; i < len; i++ ) {
+		if ( (matcher = Expr.relative[ tokens[i].type ]) ) {
+			matchers = [ addCombinator(elementMatcher( matchers ), matcher) ];
+		} else {
+			matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches );
+
+			// Return special upon seeing a positional matcher
+			if ( matcher[ expando ] ) {
+				// Find the next relative operator (if any) for proper handling
+				j = ++i;
+				for ( ; j < len; j++ ) {
+					if ( Expr.relative[ tokens[j].type ] ) {
+						break;
+					}
+				}
+				return setMatcher(
+					i > 1 && elementMatcher( matchers ),
+					i > 1 && toSelector(
+						// If the preceding token was a descendant combinator, insert an implicit any-element `*`
+						tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" })
+					).replace( rtrim, "$1" ),
+					matcher,
+					i < j && matcherFromTokens( tokens.slice( i, j ) ),
+					j < len && matcherFromTokens( (tokens = tokens.slice( j )) ),
+					j < len && toSelector( tokens )
+				);
+			}
+			matchers.push( matcher );
+		}
+	}
+
+	return elementMatcher( matchers );
+}
+
+function matcherFromGroupMatchers( elementMatchers, setMatchers ) {
+	var bySet = setMatchers.length > 0,
+		byElement = elementMatchers.length > 0,
+		superMatcher = function( seed, context, xml, results, outermost ) {
+			var elem, j, matcher,
+				matchedCount = 0,
+				i = "0",
+				unmatched = seed && [],
+				setMatched = [],
+				contextBackup = outermostContext,
+				// We must always have either seed elements or outermost context
+				elems = seed || byElement && Expr.find["TAG"]( "*", outermost ),
+				// Use integer dirruns iff this is the outermost matcher
+				dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1),
+				len = elems.length;
+
+			if ( outermost ) {
+				outermostContext = context === document || context || outermost;
+			}
+
+			// Add elements passing elementMatchers directly to results
+			// Support: IE<9, Safari
+			// Tolerate NodeList properties (IE: "length"; Safari: <number>) matching elements by id
+			for ( ; i !== len && (elem = elems[i]) != null; i++ ) {
+				if ( byElement && elem ) {
+					j = 0;
+					if ( !context && elem.ownerDocument !== document ) {
+						setDocument( elem );
+						xml = !documentIsHTML;
+					}
+					while ( (matcher = elementMatchers[j++]) ) {
+						if ( matcher( elem, context || document, xml) ) {
+							results.push( elem );
+							break;
+						}
+					}
+					if ( outermost ) {
+						dirruns = dirrunsUnique;
+					}
+				}
+
+				// Track unmatched elements for set filters
+				if ( bySet ) {
+					// They will have gone through all possible matchers
+					if ( (elem = !matcher && elem) ) {
+						matchedCount--;
+					}
+
+					// Lengthen the array for every element, matched or not
+					if ( seed ) {
+						unmatched.push( elem );
+					}
+				}
+			}
+
+			// `i` is now the count of elements visited above, and adding it to `matchedCount`
+			// makes the latter nonnegative.
+			matchedCount += i;
+
+			// Apply set filters to unmatched elements
+			// NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount`
+			// equals `i`), unless we didn't visit _any_ elements in the above loop because we have
+			// no element matchers and no seed.
+			// Incrementing an initially-string "0" `i` allows `i` to remain a string only in that
+			// case, which will result in a "00" `matchedCount` that differs from `i` but is also
+			// numerically zero.
+			if ( bySet && i !== matchedCount ) {
+				j = 0;
+				while ( (matcher = setMatchers[j++]) ) {
+					matcher( unmatched, setMatched, context, xml );
+				}
+
+				if ( seed ) {
+					// Reintegrate element matches to eliminate the need for sorting
+					if ( matchedCount > 0 ) {
+						while ( i-- ) {
+							if ( !(unmatched[i] || setMatched[i]) ) {
+								setMatched[i] = pop.call( results );
+							}
+						}
+					}
+
+					// Discard index placeholder values to get only actual matches
+					setMatched = condense( setMatched );
+				}
+
+				// Add matches to results
+				push.apply( results, setMatched );
+
+				// Seedless set matches succeeding multiple successful matchers stipulate sorting
+				if ( outermost && !seed && setMatched.length > 0 &&
+					( matchedCount + setMatchers.length ) > 1 ) {
+
+					Sizzle.uniqueSort( results );
+				}
+			}
+
+			// Override manipulation of globals by nested matchers
+			if ( outermost ) {
+				dirruns = dirrunsUnique;
+				outermostContext = contextBackup;
+			}
+
+			return unmatched;
+		};
+
+	return bySet ?
+		markFunction( superMatcher ) :
+		superMatcher;
+}
+
+compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) {
+	var i,
+		setMatchers = [],
+		elementMatchers = [],
+		cached = compilerCache[ selector + " " ];
+
+	if ( !cached ) {
+		// Generate a function of recursive functions that can be used to check each element
+		if ( !match ) {
+			match = tokenize( selector );
+		}
+		i = match.length;
+		while ( i-- ) {
+			cached = matcherFromTokens( match[i] );
+			if ( cached[ expando ] ) {
+				setMatchers.push( cached );
+			} else {
+				elementMatchers.push( cached );
+			}
+		}
+
+		// Cache the compiled function
+		cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) );
+
+		// Save selector and tokenization
+		cached.selector = selector;
+	}
+	return cached;
+};
+
+/**
+ * A low-level selection function that works with Sizzle's compiled
+ *  selector functions
+ * @param {String|Function} selector A selector or a pre-compiled
+ *  selector function built with Sizzle.compile
+ * @param {Element} context
+ * @param {Array} [results]
+ * @param {Array} [seed] A set of elements to match against
+ */
+select = Sizzle.select = function( selector, context, results, seed ) {
+	var i, tokens, token, type, find,
+		compiled = typeof selector === "function" && selector,
+		match = !seed && tokenize( (selector = compiled.selector || selector) );
+
+	results = results || [];
+
+	// Try to minimize operations if there is only one selector in the list and no seed
+	// (the latter of which guarantees us context)
+	if ( match.length === 1 ) {
+
+		// Reduce context if the leading compound selector is an ID
+		tokens = match[0] = match[0].slice( 0 );
+		if ( tokens.length > 2 && (token = tokens[0]).type === "ID" &&
+				context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) {
+
+			context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0];
+			if ( !context ) {
+				return results;
+
+			// Precompiled matchers will still verify ancestry, so step up a level
+			} else if ( compiled ) {
+				context = context.parentNode;
+			}
+
+			selector = selector.slice( tokens.shift().value.length );
+		}
+
+		// Fetch a seed set for right-to-left matching
+		i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length;
+		while ( i-- ) {
+			token = tokens[i];
+
+			// Abort if we hit a combinator
+			if ( Expr.relative[ (type = token.type) ] ) {
+				break;
+			}
+			if ( (find = Expr.find[ type ]) ) {
+				// Search, expanding context for leading sibling combinators
+				if ( (seed = find(
+					token.matches[0].replace( runescape, funescape ),
+					rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context
+				)) ) {
+
+					// If seed is empty or no tokens remain, we can return early
+					tokens.splice( i, 1 );
+					selector = seed.length && toSelector( tokens );
+					if ( !selector ) {
+						push.apply( results, seed );
+						return results;
+					}
+
+					break;
+				}
+			}
+		}
+	}
+
+	// Compile and execute a filtering function if one is not provided
+	// Provide `match` to avoid retokenization if we modified the selector above
+	( compiled || compile( selector, match ) )(
+		seed,
+		context,
+		!documentIsHTML,
+		results,
+		!context || rsibling.test( selector ) && testContext( context.parentNode ) || context
+	);
+	return results;
+};
+
+// One-time assignments
+
+// Sort stability
+support.sortStable = expando.split("").sort( sortOrder ).join("") === expando;
+
+// Support: Chrome 14-35+
+// Always assume duplicates if they aren't passed to the comparison function
+support.detectDuplicates = !!hasDuplicate;
+
+// Initialize against the default document
+setDocument();
+
+// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27)
+// Detached nodes confoundingly follow *each other*
+support.sortDetached = assert(function( el ) {
+	// Should return 1, but returns 4 (following)
+	return el.compareDocumentPosition( document.createElement("fieldset") ) & 1;
+});
+
+// Support: IE<8
+// Prevent attribute/property "interpolation"
+// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx
+if ( !assert(function( el ) {
+	el.innerHTML = "<a href='#'></a>";
+	return el.firstChild.getAttribute("href") === "#" ;
+}) ) {
+	addHandle( "type|href|height|width", function( elem, name, isXML ) {
+		if ( !isXML ) {
+			return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 );
+		}
+	});
+}
+
+// Support: IE<9
+// Use defaultValue in place of getAttribute("value")
+if ( !support.attributes || !assert(function( el ) {
+	el.innerHTML = "<input/>";
+	el.firstChild.setAttribute( "value", "" );
+	return el.firstChild.getAttribute( "value" ) === "";
+}) ) {
+	addHandle( "value", function( elem, name, isXML ) {
+		if ( !isXML && elem.nodeName.toLowerCase() === "input" ) {
+			return elem.defaultValue;
+		}
+	});
+}
+
+// Support: IE<9
+// Use getAttributeNode to fetch booleans when getAttribute lies
+if ( !assert(function( el ) {
+	return el.getAttribute("disabled") == null;
+}) ) {
+	addHandle( booleans, function( elem, name, isXML ) {
+		var val;
+		if ( !isXML ) {
+			return elem[ name ] === true ? name.toLowerCase() :
+					(val = elem.getAttributeNode( name )) && val.specified ?
+					val.value :
+				null;
+		}
+	});
+}
+
+return Sizzle;
+
+})( window );
+
+
+
+jQuery.find = Sizzle;
+jQuery.expr = Sizzle.selectors;
+
+// Deprecated
+jQuery.expr[ ":" ] = jQuery.expr.pseudos;
+jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort;
+jQuery.text = Sizzle.getText;
+jQuery.isXMLDoc = Sizzle.isXML;
+jQuery.contains = Sizzle.contains;
+jQuery.escapeSelector = Sizzle.escape;
+
+
+
+
+var dir = function( elem, dir, until ) {
+	var matched = [],
+		truncate = until !== undefined;
+
+	while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) {
+		if ( elem.nodeType === 1 ) {
+			if ( truncate && jQuery( elem ).is( until ) ) {
+				break;
+			}
+			matched.push( elem );
+		}
+	}
+	return matched;
+};
+
+
+var siblings = function( n, elem ) {
+	var matched = [];
+
+	for ( ; n; n = n.nextSibling ) {
+		if ( n.nodeType === 1 && n !== elem ) {
+			matched.push( n );
+		}
+	}
+
+	return matched;
+};
+
+
+var rneedsContext = jQuery.expr.match.needsContext;
+
+
+
+function nodeName( elem, name ) {
+
+  return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase();
+
+};
+var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i );
+
+
+
+// Implement the identical functionality for filter and not
+function winnow( elements, qualifier, not ) {
+	if ( isFunction( qualifier ) ) {
+		return jQuery.grep( elements, function( elem, i ) {
+			return !!qualifier.call( elem, i, elem ) !== not;
+		} );
+	}
+
+	// Single element
+	if ( qualifier.nodeType ) {
+		return jQuery.grep( elements, function( elem ) {
+			return ( elem === qualifier ) !== not;
+		} );
+	}
+
+	// Arraylike of elements (jQuery, arguments, Array)
+	if ( typeof qualifier !== "string" ) {
+		return jQuery.grep( elements, function( elem ) {
+			return ( indexOf.call( qualifier, elem ) > -1 ) !== not;
+		} );
+	}
+
+	// Filtered directly for both simple and complex selectors
+	return jQuery.filter( qualifier, elements, not );
+}
+
+jQuery.filter = function( expr, elems, not ) {
+	var elem = elems[ 0 ];
+
+	if ( not ) {
+		expr = ":not(" + expr + ")";
+	}
+
+	if ( elems.length === 1 && elem.nodeType === 1 ) {
+		return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : [];
+	}
+
+	return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) {
+		return elem.nodeType === 1;
+	} ) );
+};
+
+jQuery.fn.extend( {
+	find: function( selector ) {
+		var i, ret,
+			len = this.length,
+			self = this;
+
+		if ( typeof selector !== "string" ) {
+			return this.pushStack( jQuery( selector ).filter( function() {
+				for ( i = 0; i < len; i++ ) {
+					if ( jQuery.contains( self[ i ], this ) ) {
+						return true;
+					}
+				}
+			} ) );
+		}
+
+		ret = this.pushStack( [] );
+
+		for ( i = 0; i < len; i++ ) {
+			jQuery.find( selector, self[ i ], ret );
+		}
+
+		return len > 1 ? jQuery.uniqueSort( ret ) : ret;
+	},
+	filter: function( selector ) {
+		return this.pushStack( winnow( this, selector || [], false ) );
+	},
+	not: function( selector ) {
+		return this.pushStack( winnow( this, selector || [], true ) );
+	},
+	is: function( selector ) {
+		return !!winnow(
+			this,
+
+			// If this is a positional/relative selector, check membership in the returned set
+			// so $("p:first").is("p:last") won't return true for a doc with two "p".
+			typeof selector === "string" && rneedsContext.test( selector ) ?
+				jQuery( selector ) :
+				selector || [],
+			false
+		).length;
+	}
+} );
+
+
+// Initialize a jQuery object
+
+
+// A central reference to the root jQuery(document)
+var rootjQuery,
+
+	// A simple way to check for HTML strings
+	// Prioritize #id over <tag> to avoid XSS via location.hash (#9521)
+	// Strict HTML recognition (#11290: must start with <)
+	// Shortcut simple #id case for speed
+	rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/,
+
+	init = jQuery.fn.init = function( selector, context, root ) {
+		var match, elem;
+
+		// HANDLE: $(""), $(null), $(undefined), $(false)
+		if ( !selector ) {
+			return this;
+		}
+
+		// Method init() accepts an alternate rootjQuery
+		// so migrate can support jQuery.sub (gh-2101)
+		root = root || rootjQuery;
+
+		// Handle HTML strings
+		if ( typeof selector === "string" ) {
+			if ( selector[ 0 ] === "<" &&
+				selector[ selector.length - 1 ] === ">" &&
+				selector.length >= 3 ) {
+
+				// Assume that strings that start and end with <> are HTML and skip the regex check
+				match = [ null, selector, null ];
+
+			} else {
+				match = rquickExpr.exec( selector );
+			}
+
+			// Match html or make sure no context is specified for #id
+			if ( match && ( match[ 1 ] || !context ) ) {
+
+				// HANDLE: $(html) -> $(array)
+				if ( match[ 1 ] ) {
+					context = context instanceof jQuery ? context[ 0 ] : context;
+
+					// Option to run scripts is true for back-compat
+					// Intentionally let the error be thrown if parseHTML is not present
+					jQuery.merge( this, jQuery.parseHTML(
+						match[ 1 ],
+						context && context.nodeType ? context.ownerDocument || context : document,
+						true
+					) );
+
+					// HANDLE: $(html, props)
+					if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) {
+						for ( match in context ) {
+
+							// Properties of context are called as methods if possible
+							if ( isFunction( this[ match ] ) ) {
+								this[ match ]( context[ match ] );
+
+							// ...and otherwise set as attributes
+							} else {
+								this.attr( match, context[ match ] );
+							}
+						}
+					}
+
+					return this;
+
+				// HANDLE: $(#id)
+				} else {
+					elem = document.getElementById( match[ 2 ] );
+
+					if ( elem ) {
+
+						// Inject the element directly into the jQuery object
+						this[ 0 ] = elem;
+						this.length = 1;
+					}
+					return this;
+				}
+
+			// HANDLE: $(expr, $(...))
+			} else if ( !context || context.jquery ) {
+				return ( context || root ).find( selector );
+
+			// HANDLE: $(expr, context)
+			// (which is just equivalent to: $(context).find(expr)
+			} else {
+				return this.constructor( context ).find( selector );
+			}
+
+		// HANDLE: $(DOMElement)
+		} else if ( selector.nodeType ) {
+			this[ 0 ] = selector;
+			this.length = 1;
+			return this;
+
+		// HANDLE: $(function)
+		// Shortcut for document ready
+		} else if ( isFunction( selector ) ) {
+			return root.ready !== undefined ?
+				root.ready( selector ) :
+
+				// Execute immediately if ready is not present
+				selector( jQuery );
+		}
+
+		return jQuery.makeArray( selector, this );
+	};
+
+// Give the init function the jQuery prototype for later instantiation
+init.prototype = jQuery.fn;
+
+// Initialize central reference
+rootjQuery = jQuery( document );
+
+
+var rparentsprev = /^(?:parents|prev(?:Until|All))/,
+
+	// Methods guaranteed to produce a unique set when starting from a unique set
+	guaranteedUnique = {
+		children: true,
+		contents: true,
+		next: true,
+		prev: true
+	};
+
+jQuery.fn.extend( {
+	has: function( target ) {
+		var targets = jQuery( target, this ),
+			l = targets.length;
+
+		return this.filter( function() {
+			var i = 0;
+			for ( ; i < l; i++ ) {
+				if ( jQuery.contains( this, targets[ i ] ) ) {
+					return true;
+				}
+			}
+		} );
+	},
+
+	closest: function( selectors, context ) {
+		var cur,
+			i = 0,
+			l = this.length,
+			matched = [],
+			targets = typeof selectors !== "string" && jQuery( selectors );
+
+		// Positional selectors never match, since there's no _selection_ context
+		if ( !rneedsContext.test( selectors ) ) {
+			for ( ; i < l; i++ ) {
+				for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) {
+
+					// Always skip document fragments
+					if ( cur.nodeType < 11 && ( targets ?
+						targets.index( cur ) > -1 :
+
+						// Don't pass non-elements to Sizzle
+						cur.nodeType === 1 &&
+							jQuery.find.matchesSelector( cur, selectors ) ) ) {
+
+						matched.push( cur );
+						break;
+					}
+				}
+			}
+		}
+
+		return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched );
+	},
+
+	// Determine the position of an element within the set
+	index: function( elem ) {
+
+		// No argument, return index in parent
+		if ( !elem ) {
+			return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1;
+		}
+
+		// Index in selector
+		if ( typeof elem === "string" ) {
+			return indexOf.call( jQuery( elem ), this[ 0 ] );
+		}
+
+		// Locate the position of the desired element
+		return indexOf.call( this,
+
+			// If it receives a jQuery object, the first element is used
+			elem.jquery ? elem[ 0 ] : elem
+		);
+	},
+
+	add: function( selector, context ) {
+		return this.pushStack(
+			jQuery.uniqueSort(
+				jQuery.merge( this.get(), jQuery( selector, context ) )
+			)
+		);
+	},
+
+	addBack: function( selector ) {
+		return this.add( selector == null ?
+			this.prevObject : this.prevObject.filter( selector )
+		);
+	}
+} );
+
+function sibling( cur, dir ) {
+	while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {}
+	return cur;
+}
+
+jQuery.each( {
+	parent: function( elem ) {
+		var parent = elem.parentNode;
+		return parent && parent.nodeType !== 11 ? parent : null;
+	},
+	parents: function( elem ) {
+		return dir( elem, "parentNode" );
+	},
+	parentsUntil: function( elem, i, until ) {
+		return dir( elem, "parentNode", until );
+	},
+	next: function( elem ) {
+		return sibling( elem, "nextSibling" );
+	},
+	prev: function( elem ) {
+		return sibling( elem, "previousSibling" );
+	},
+	nextAll: function( elem ) {
+		return dir( elem, "nextSibling" );
+	},
+	prevAll: function( elem ) {
+		return dir( elem, "previousSibling" );
+	},
+	nextUntil: function( elem, i, until ) {
+		return dir( elem, "nextSibling", until );
+	},
+	prevUntil: function( elem, i, until ) {
+		return dir( elem, "previousSibling", until );
+	},
+	siblings: function( elem ) {
+		return siblings( ( elem.parentNode || {} ).firstChild, elem );
+	},
+	children: function( elem ) {
+		return siblings( elem.firstChild );
+	},
+	contents: function( elem ) {
+		if ( typeof elem.contentDocument !== "undefined" ) {
+			return elem.contentDocument;
+		}
+
+		// Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only
+		// Treat the template element as a regular one in browsers that
+		// don't support it.
+		if ( nodeName( elem, "template" ) ) {
+			elem = elem.content || elem;
+		}
+
+		return jQuery.merge( [], elem.childNodes );
+	}
+}, function( name, fn ) {
+	jQuery.fn[ name ] = function( until, selector ) {
+		var matched = jQuery.map( this, fn, until );
+
+		if ( name.slice( -5 ) !== "Until" ) {
+			selector = until;
+		}
+
+		if ( selector && typeof selector === "string" ) {
+			matched = jQuery.filter( selector, matched );
+		}
+
+		if ( this.length > 1 ) {
+
+			// Remove duplicates
+			if ( !guaranteedUnique[ name ] ) {
+				jQuery.uniqueSort( matched );
+			}
+
+			// Reverse order for parents* and prev-derivatives
+			if ( rparentsprev.test( name ) ) {
+				matched.reverse();
+			}
+		}
+
+		return this.pushStack( matched );
+	};
+} );
+var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g );
+
+
+
+// Convert String-formatted options into Object-formatted ones
+function createOptions( options ) {
+	var object = {};
+	jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) {
+		object[ flag ] = true;
+	} );
+	return object;
+}
+
+/*
+ * Create a callback list using the following parameters:
+ *
+ *	options: an optional list of space-separated options that will change how
+ *			the callback list behaves or a more traditional option object
+ *
+ * By default a callback list will act like an event callback list and can be
+ * "fired" multiple times.
+ *
+ * Possible options:
+ *
+ *	once:			will ensure the callback list can only be fired once (like a Deferred)
+ *
+ *	memory:			will keep track of previous values and will call any callback added
+ *					after the list has been fired right away with the latest "memorized"
+ *					values (like a Deferred)
+ *
+ *	unique:			will ensure a callback can only be added once (no duplicate in the list)
+ *
+ *	stopOnFalse:	interrupt callings when a callback returns false
+ *
+ */
+jQuery.Callbacks = function( options ) {
+
+	// Convert options from String-formatted to Object-formatted if needed
+	// (we check in cache first)
+	options = typeof options === "string" ?
+		createOptions( options ) :
+		jQuery.extend( {}, options );
+
+	var // Flag to know if list is currently firing
+		firing,
+
+		// Last fire value for non-forgettable lists
+		memory,
+
+		// Flag to know if list was already fired
+		fired,
+
+		// Flag to prevent firing
+		locked,
+
+		// Actual callback list
+		list = [],
+
+		// Queue of execution data for repeatable lists
+		queue = [],
+
+		// Index of currently firing callback (modified by add/remove as needed)
+		firingIndex = -1,
+
+		// Fire callbacks
+		fire = function() {
+
+			// Enforce single-firing
+			locked = locked || options.once;
+
+			// Execute callbacks for all pending executions,
+			// respecting firingIndex overrides and runtime changes
+			fired = firing = true;
+			for ( ; queue.length; firingIndex = -1 ) {
+				memory = queue.shift();
+				while ( ++firingIndex < list.length ) {
+
+					// Run callback and check for early termination
+					if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false &&
+						options.stopOnFalse ) {
+
+						// Jump to end and forget the data so .add doesn't re-fire
+						firingIndex = list.length;
+						memory = false;
+					}
+				}
+			}
+
+			// Forget the data if we're done with it
+			if ( !options.memory ) {
+				memory = false;
+			}
+
+			firing = false;
+
+			// Clean up if we're done firing for good
+			if ( locked ) {
+
+				// Keep an empty list if we have data for future add calls
+				if ( memory ) {
+					list = [];
+
+				// Otherwise, this object is spent
+				} else {
+					list = "";
+				}
+			}
+		},
+
+		// Actual Callbacks object
+		self = {
+
+			// Add a callback or a collection of callbacks to the list
+			add: function() {
+				if ( list ) {
+
+					// If we have memory from a past run, we should fire after adding
+					if ( memory && !firing ) {
+						firingIndex = list.length - 1;
+						queue.push( memory );
+					}
+
+					( function add( args ) {
+						jQuery.each( args, function( _, arg ) {
+							if ( isFunction( arg ) ) {
+								if ( !options.unique || !self.has( arg ) ) {
+									list.push( arg );
+								}
+							} else if ( arg && arg.length && toType( arg ) !== "string" ) {
+
+								// Inspect recursively
+								add( arg );
+							}
+						} );
+					} )( arguments );
+
+					if ( memory && !firing ) {
+						fire();
+					}
+				}
+				return this;
+			},
+
+			// Remove a callback from the list
+			remove: function() {
+				jQuery.each( arguments, function( _, arg ) {
+					var index;
+					while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) {
+						list.splice( index, 1 );
+
+						// Handle firing indexes
+						if ( index <= firingIndex ) {
+							firingIndex--;
+						}
+					}
+				} );
+				return this;
+			},
+
+			// Check if a given callback is in the list.
+			// If no argument is given, return whether or not list has callbacks attached.
+			has: function( fn ) {
+				return fn ?
+					jQuery.inArray( fn, list ) > -1 :
+					list.length > 0;
+			},
+
+			// Remove all callbacks from the list
+			empty: function() {
+				if ( list ) {
+					list = [];
+				}
+				return this;
+			},
+
+			// Disable .fire and .add
+			// Abort any current/pending executions
+			// Clear all callbacks and values
+			disable: function() {
+				locked = queue = [];
+				list = memory = "";
+				return this;
+			},
+			disabled: function() {
+				return !list;
+			},
+
+			// Disable .fire
+			// Also disable .add unless we have memory (since it would have no effect)
+			// Abort any pending executions
+			lock: function() {
+				locked = queue = [];
+				if ( !memory && !firing ) {
+					list = memory = "";
+				}
+				return this;
+			},
+			locked: function() {
+				return !!locked;
+			},
+
+			// Call all callbacks with the given context and arguments
+			fireWith: function( context, args ) {
+				if ( !locked ) {
+					args = args || [];
+					args = [ context, args.slice ? args.slice() : args ];
+					queue.push( args );
+					if ( !firing ) {
+						fire();
+					}
+				}
+				return this;
+			},
+
+			// Call all the callbacks with the given arguments
+			fire: function() {
+				self.fireWith( this, arguments );
+				return this;
+			},
+
+			// To know if the callbacks have already been called at least once
+			fired: function() {
+				return !!fired;
+			}
+		};
+
+	return self;
+};
+
+
+function Identity( v ) {
+	return v;
+}
+function Thrower( ex ) {
+	throw ex;
+}
+
+function adoptValue( value, resolve, reject, noValue ) {
+	var method;
+
+	try {
+
+		// Check for promise aspect first to privilege synchronous behavior
+		if ( value && isFunction( ( method = value.promise ) ) ) {
+			method.call( value ).done( resolve ).fail( reject );
+
+		// Other thenables
+		} else if ( value && isFunction( ( method = value.then ) ) ) {
+			method.call( value, resolve, reject );
+
+		// Other non-thenables
+		} else {
+
+			// Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer:
+			// * false: [ value ].slice( 0 ) => resolve( value )
+			// * true: [ value ].slice( 1 ) => resolve()
+			resolve.apply( undefined, [ value ].slice( noValue ) );
+		}
+
+	// For Promises/A+, convert exceptions into rejections
+	// Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in
+	// Deferred#then to conditionally suppress rejection.
+	} catch ( value ) {
+
+		// Support: Android 4.0 only
+		// Strict mode functions invoked without .call/.apply get global-object context
+		reject.apply( undefined, [ value ] );
+	}
+}
+
+jQuery.extend( {
+
+	Deferred: function( func ) {
+		var tuples = [
+
+				// action, add listener, callbacks,
+				// ... .then handlers, argument index, [final state]
+				[ "notify", "progress", jQuery.Callbacks( "memory" ),
+					jQuery.Callbacks( "memory" ), 2 ],
+				[ "resolve", "done", jQuery.Callbacks( "once memory" ),
+					jQuery.Callbacks( "once memory" ), 0, "resolved" ],
+				[ "reject", "fail", jQuery.Callbacks( "once memory" ),
+					jQuery.Callbacks( "once memory" ), 1, "rejected" ]
+			],
+			state = "pending",
+			promise = {
+				state: function() {
+					return state;
+				},
+				always: function() {
+					deferred.done( arguments ).fail( arguments );
+					return this;
+				},
+				"catch": function( fn ) {
+					return promise.then( null, fn );
+				},
+
+				// Keep pipe for back-compat
+				pipe: function( /* fnDone, fnFail, fnProgress */ ) {
+					var fns = arguments;
+
+					return jQuery.Deferred( function( newDefer ) {
+						jQuery.each( tuples, function( i, tuple ) {
+
+							// Map tuples (progress, done, fail) to arguments (done, fail, progress)
+							var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ];
+
+							// deferred.progress(function() { bind to newDefer or newDefer.notify })
+							// deferred.done(function() { bind to newDefer or newDefer.resolve })
+							// deferred.fail(function() { bind to newDefer or newDefer.reject })
+							deferred[ tuple[ 1 ] ]( function() {
+								var returned = fn && fn.apply( this, arguments );
+								if ( returned && isFunction( returned.promise ) ) {
+									returned.promise()
+										.progress( newDefer.notify )
+										.done( newDefer.resolve )
+										.fail( newDefer.reject );
+								} else {
+									newDefer[ tuple[ 0 ] + "With" ](
+										this,
+										fn ? [ returned ] : arguments
+									);
+								}
+							} );
+						} );
+						fns = null;
+					} ).promise();
+				},
+				then: function( onFulfilled, onRejected, onProgress ) {
+					var maxDepth = 0;
+					function resolve( depth, deferred, handler, special ) {
+						return function() {
+							var that = this,
+								args = arguments,
+								mightThrow = function() {
+									var returned, then;
+
+									// Support: Promises/A+ section 2.3.3.3.3
+									// https://promisesaplus.com/#point-59
+									// Ignore double-resolution attempts
+									if ( depth < maxDepth ) {
+										return;
+									}
+
+									returned = handler.apply( that, args );
+
+									// Support: Promises/A+ section 2.3.1
+									// https://promisesaplus.com/#point-48
+									if ( returned === deferred.promise() ) {
+										throw new TypeError( "Thenable self-resolution" );
+									}
+
+									// Support: Promises/A+ sections 2.3.3.1, 3.5
+									// https://promisesaplus.com/#point-54
+									// https://promisesaplus.com/#point-75
+									// Retrieve `then` only once
+									then = returned &&
+
+										// Support: Promises/A+ section 2.3.4
+										// https://promisesaplus.com/#point-64
+										// Only check objects and functions for thenability
+										( typeof returned === "object" ||
+											typeof returned === "function" ) &&
+										returned.then;
+
+									// Handle a returned thenable
+									if ( isFunction( then ) ) {
+
+										// Special processors (notify) just wait for resolution
+										if ( special ) {
+											then.call(
+												returned,
+												resolve( maxDepth, deferred, Identity, special ),
+												resolve( maxDepth, deferred, Thrower, special )
+											);
+
+										// Normal processors (resolve) also hook into progress
+										} else {
+
+											// ...and disregard older resolution values
+											maxDepth++;
+
+											then.call(
+												returned,
+												resolve( maxDepth, deferred, Identity, special ),
+												resolve( maxDepth, deferred, Thrower, special ),
+												resolve( maxDepth, deferred, Identity,
+													deferred.notifyWith )
+											);
+										}
+
+									// Handle all other returned values
+									} else {
+
+										// Only substitute handlers pass on context
+										// and multiple values (non-spec behavior)
+										if ( handler !== Identity ) {
+											that = undefined;
+											args = [ returned ];
+										}
+
+										// Process the value(s)
+										// Default process is resolve
+										( special || deferred.resolveWith )( that, args );
+									}
+								},
+
+								// Only normal processors (resolve) catch and reject exceptions
+								process = special ?
+									mightThrow :
+									function() {
+										try {
+											mightThrow();
+										} catch ( e ) {
+
+											if ( jQuery.Deferred.exceptionHook ) {
+												jQuery.Deferred.exceptionHook( e,
+													process.stackTrace );
+											}
+
+											// Support: Promises/A+ section 2.3.3.3.4.1
+											// https://promisesaplus.com/#point-61
+											// Ignore post-resolution exceptions
+											if ( depth + 1 >= maxDepth ) {
+
+												// Only substitute handlers pass on context
+												// and multiple values (non-spec behavior)
+												if ( handler !== Thrower ) {
+													that = undefined;
+													args = [ e ];
+												}
+
+												deferred.rejectWith( that, args );
+											}
+										}
+									};
+
+							// Support: Promises/A+ section 2.3.3.3.1
+							// https://promisesaplus.com/#point-57
+							// Re-resolve promises immediately to dodge false rejection from
+							// subsequent errors
+							if ( depth ) {
+								process();
+							} else {
+
+								// Call an optional hook to record the stack, in case of exception
+								// since it's otherwise lost when execution goes async
+								if ( jQuery.Deferred.getStackHook ) {
+									process.stackTrace = jQuery.Deferred.getStackHook();
+								}
+								window.setTimeout( process );
+							}
+						};
+					}
+
+					return jQuery.Deferred( function( newDefer ) {
+
+						// progress_handlers.add( ... )
+						tuples[ 0 ][ 3 ].add(
+							resolve(
+								0,
+								newDefer,
+								isFunction( onProgress ) ?
+									onProgress :
+									Identity,
+								newDefer.notifyWith
+							)
+						);
+
+						// fulfilled_handlers.add( ... )
+						tuples[ 1 ][ 3 ].add(
+							resolve(
+								0,
+								newDefer,
+								isFunction( onFulfilled ) ?
+									onFulfilled :
+									Identity
+							)
+						);
+
+						// rejected_handlers.add( ... )
+						tuples[ 2 ][ 3 ].add(
+							resolve(
+								0,
+								newDefer,
+								isFunction( onRejected ) ?
+									onRejected :
+									Thrower
+							)
+						);
+					} ).promise();
+				},
+
+				// Get a promise for this deferred
+				// If obj is provided, the promise aspect is added to the object
+				promise: function( obj ) {
+					return obj != null ? jQuery.extend( obj, promise ) : promise;
+				}
+			},
+			deferred = {};
+
+		// Add list-specific methods
+		jQuery.each( tuples, function( i, tuple ) {
+			var list = tuple[ 2 ],
+				stateString = tuple[ 5 ];
+
+			// promise.progress = list.add
+			// promise.done = list.add
+			// promise.fail = list.add
+			promise[ tuple[ 1 ] ] = list.add;
+
+			// Handle state
+			if ( stateString ) {
+				list.add(
+					function() {
+
+						// state = "resolved" (i.e., fulfilled)
+						// state = "rejected"
+						state = stateString;
+					},
+
+					// rejected_callbacks.disable
+					// fulfilled_callbacks.disable
+					tuples[ 3 - i ][ 2 ].disable,
+
+					// rejected_handlers.disable
+					// fulfilled_handlers.disable
+					tuples[ 3 - i ][ 3 ].disable,
+
+					// progress_callbacks.lock
+					tuples[ 0 ][ 2 ].lock,
+
+					// progress_handlers.lock
+					tuples[ 0 ][ 3 ].lock
+				);
+			}
+
+			// progress_handlers.fire
+			// fulfilled_handlers.fire
+			// rejected_handlers.fire
+			list.add( tuple[ 3 ].fire );
+
+			// deferred.notify = function() { deferred.notifyWith(...) }
+			// deferred.resolve = function() { deferred.resolveWith(...) }
+			// deferred.reject = function() { deferred.rejectWith(...) }
+			deferred[ tuple[ 0 ] ] = function() {
+				deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments );
+				return this;
+			};
+
+			// deferred.notifyWith = list.fireWith
+			// deferred.resolveWith = list.fireWith
+			// deferred.rejectWith = list.fireWith
+			deferred[ tuple[ 0 ] + "With" ] = list.fireWith;
+		} );
+
+		// Make the deferred a promise
+		promise.promise( deferred );
+
+		// Call given func if any
+		if ( func ) {
+			func.call( deferred, deferred );
+		}
+
+		// All done!
+		return deferred;
+	},
+
+	// Deferred helper
+	when: function( singleValue ) {
+		var
+
+			// count of uncompleted subordinates
+			remaining = arguments.length,
+
+			// count of unprocessed arguments
+			i = remaining,
+
+			// subordinate fulfillment data
+			resolveContexts = Array( i ),
+			resolveValues = slice.call( arguments ),
+
+			// the master Deferred
+			master = jQuery.Deferred(),
+
+			// subordinate callback factory
+			updateFunc = function( i ) {
+				return function( value ) {
+					resolveContexts[ i ] = this;
+					resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value;
+					if ( !( --remaining ) ) {
+						master.resolveWith( resolveContexts, resolveValues );
+					}
+				};
+			};
+
+		// Single- and empty arguments are adopted like Promise.resolve
+		if ( remaining <= 1 ) {
+			adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject,
+				!remaining );
+
+			// Use .then() to unwrap secondary thenables (cf. gh-3000)
+			if ( master.state() === "pending" ||
+				isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) {
+
+				return master.then();
+			}
+		}
+
+		// Multiple arguments are aggregated like Promise.all array elements
+		while ( i-- ) {
+			adoptValue( resolveValues[ i ], updateFunc( i ), master.reject );
+		}
+
+		return master.promise();
+	}
+} );
+
+
+// These usually indicate a programmer mistake during development,
+// warn about them ASAP rather than swallowing them by default.
+var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/;
+
+jQuery.Deferred.exceptionHook = function( error, stack ) {
+
+	// Support: IE 8 - 9 only
+	// Console exists when dev tools are open, which can happen at any time
+	if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) {
+		window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack );
+	}
+};
+
+
+
+
+jQuery.readyException = function( error ) {
+	window.setTimeout( function() {
+		throw error;
+	} );
+};
+
+
+
+
+// The deferred used on DOM ready
+var readyList = jQuery.Deferred();
+
+jQuery.fn.ready = function( fn ) {
+
+	readyList
+		.then( fn )
+
+		// Wrap jQuery.readyException in a function so that the lookup
+		// happens at the time of error handling instead of callback
+		// registration.
+		.catch( function( error ) {
+			jQuery.readyException( error );
+		} );
+
+	return this;
+};
+
+jQuery.extend( {
+
+	// Is the DOM ready to be used? Set to true once it occurs.
+	isReady: false,
+
+	// A counter to track how many items to wait for before
+	// the ready event fires. See #6781
+	readyWait: 1,
+
+	// Handle when the DOM is ready
+	ready: function( wait ) {
+
+		// Abort if there are pending holds or we're already ready
+		if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) {
+			return;
+		}
+
+		// Remember that the DOM is ready
+		jQuery.isReady = true;
+
+		// If a normal DOM Ready event fired, decrement, and wait if need be
+		if ( wait !== true && --jQuery.readyWait > 0 ) {
+			return;
+		}
+
+		// If there are functions bound, to execute
+		readyList.resolveWith( document, [ jQuery ] );
+	}
+} );
+
+jQuery.ready.then = readyList.then;
+
+// The ready event handler and self cleanup method
+function completed() {
+	document.removeEventListener( "DOMContentLoaded", completed );
+	window.removeEventListener( "load", completed );
+	jQuery.ready();
+}
+
+// Catch cases where $(document).ready() is called
+// after the browser event has already occurred.
+// Support: IE <=9 - 10 only
+// Older IE sometimes signals "interactive" too soon
+if ( document.readyState === "complete" ||
+	( document.readyState !== "loading" && !document.documentElement.doScroll ) ) {
+
+	// Handle it asynchronously to allow scripts the opportunity to delay ready
+	window.setTimeout( jQuery.ready );
+
+} else {
+
+	// Use the handy event callback
+	document.addEventListener( "DOMContentLoaded", completed );
+
+	// A fallback to window.onload, that will always work
+	window.addEventListener( "load", completed );
+}
+
+
+
+
+// Multifunctional method to get and set values of a collection
+// The value/s can optionally be executed if it's a function
+var access = function( elems, fn, key, value, chainable, emptyGet, raw ) {
+	var i = 0,
+		len = elems.length,
+		bulk = key == null;
+
+	// Sets many values
+	if ( toType( key ) === "object" ) {
+		chainable = true;
+		for ( i in key ) {
+			access( elems, fn, i, key[ i ], true, emptyGet, raw );
+		}
+
+	// Sets one value
+	} else if ( value !== undefined ) {
+		chainable = true;
+
+		if ( !isFunction( value ) ) {
+			raw = true;
+		}
+
+		if ( bulk ) {
+
+			// Bulk operations run against the entire set
+			if ( raw ) {
+				fn.call( elems, value );
+				fn = null;
+
+			// ...except when executing function values
+			} else {
+				bulk = fn;
+				fn = function( elem, key, value ) {
+					return bulk.call( jQuery( elem ), value );
+				};
+			}
+		}
+
+		if ( fn ) {
+			for ( ; i < len; i++ ) {
+				fn(
+					elems[ i ], key, raw ?
+					value :
+					value.call( elems[ i ], i, fn( elems[ i ], key ) )
+				);
+			}
+		}
+	}
+
+	if ( chainable ) {
+		return elems;
+	}
+
+	// Gets
+	if ( bulk ) {
+		return fn.call( elems );
+	}
+
+	return len ? fn( elems[ 0 ], key ) : emptyGet;
+};
+
+
+// Matches dashed string for camelizing
+var rmsPrefix = /^-ms-/,
+	rdashAlpha = /-([a-z])/g;
+
+// Used by camelCase as callback to replace()
+function fcamelCase( all, letter ) {
+	return letter.toUpperCase();
+}
+
+// Convert dashed to camelCase; used by the css and data modules
+// Support: IE <=9 - 11, Edge 12 - 15
+// Microsoft forgot to hump their vendor prefix (#9572)
+function camelCase( string ) {
+	return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase );
+}
+var acceptData = function( owner ) {
+
+	// Accepts only:
+	//  - Node
+	//    - Node.ELEMENT_NODE
+	//    - Node.DOCUMENT_NODE
+	//  - Object
+	//    - Any
+	return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType );
+};
+
+
+
+
+function Data() {
+	this.expando = jQuery.expando + Data.uid++;
+}
+
+Data.uid = 1;
+
+Data.prototype = {
+
+	cache: function( owner ) {
+
+		// Check if the owner object already has a cache
+		var value = owner[ this.expando ];
+
+		// If not, create one
+		if ( !value ) {
+			value = {};
+
+			// We can accept data for non-element nodes in modern browsers,
+			// but we should not, see #8335.
+			// Always return an empty object.
+			if ( acceptData( owner ) ) {
+
+				// If it is a node unlikely to be stringify-ed or looped over
+				// use plain assignment
+				if ( owner.nodeType ) {
+					owner[ this.expando ] = value;
+
+				// Otherwise secure it in a non-enumerable property
+				// configurable must be true to allow the property to be
+				// deleted when data is removed
+				} else {
+					Object.defineProperty( owner, this.expando, {
+						value: value,
+						configurable: true
+					} );
+				}
+			}
+		}
+
+		return value;
+	},
+	set: function( owner, data, value ) {
+		var prop,
+			cache = this.cache( owner );
+
+		// Handle: [ owner, key, value ] args
+		// Always use camelCase key (gh-2257)
+		if ( typeof data === "string" ) {
+			cache[ camelCase( data ) ] = value;
+
+		// Handle: [ owner, { properties } ] args
+		} else {
+
+			// Copy the properties one-by-one to the cache object
+			for ( prop in data ) {
+				cache[ camelCase( prop ) ] = data[ prop ];
+			}
+		}
+		return cache;
+	},
+	get: function( owner, key ) {
+		return key === undefined ?
+			this.cache( owner ) :
+
+			// Always use camelCase key (gh-2257)
+			owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ];
+	},
+	access: function( owner, key, value ) {
+
+		// In cases where either:
+		//
+		//   1. No key was specified
+		//   2. A string key was specified, but no value provided
+		//
+		// Take the "read" path and allow the get method to determine
+		// which value to return, respectively either:
+		//
+		//   1. The entire cache object
+		//   2. The data stored at the key
+		//
+		if ( key === undefined ||
+				( ( key && typeof key === "string" ) && value === undefined ) ) {
+
+			return this.get( owner, key );
+		}
+
+		// When the key is not a string, or both a key and value
+		// are specified, set or extend (existing objects) with either:
+		//
+		//   1. An object of properties
+		//   2. A key and value
+		//
+		this.set( owner, key, value );
+
+		// Since the "set" path can have two possible entry points
+		// return the expected data based on which path was taken[*]
+		return value !== undefined ? value : key;
+	},
+	remove: function( owner, key ) {
+		var i,
+			cache = owner[ this.expando ];
+
+		if ( cache === undefined ) {
+			return;
+		}
+
+		if ( key !== undefined ) {
+
+			// Support array or space separated string of keys
+			if ( Array.isArray( key ) ) {
+
+				// If key is an array of keys...
+				// We always set camelCase keys, so remove that.
+				key = key.map( camelCase );
+			} else {
+				key = camelCase( key );
+
+				// If a key with the spaces exists, use it.
+				// Otherwise, create an array by matching non-whitespace
+				key = key in cache ?
+					[ key ] :
+					( key.match( rnothtmlwhite ) || [] );
+			}
+
+			i = key.length;
+
+			while ( i-- ) {
+				delete cache[ key[ i ] ];
+			}
+		}
+
+		// Remove the expando if there's no more data
+		if ( key === undefined || jQuery.isEmptyObject( cache ) ) {
+
+			// Support: Chrome <=35 - 45
+			// Webkit & Blink performance suffers when deleting properties
+			// from DOM nodes, so set to undefined instead
+			// https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted)
+			if ( owner.nodeType ) {
+				owner[ this.expando ] = undefined;
+			} else {
+				delete owner[ this.expando ];
+			}
+		}
+	},
+	hasData: function( owner ) {
+		var cache = owner[ this.expando ];
+		return cache !== undefined && !jQuery.isEmptyObject( cache );
+	}
+};
+var dataPriv = new Data();
+
+var dataUser = new Data();
+
+
+
+//	Implementation Summary
+//
+//	1. Enforce API surface and semantic compatibility with 1.9.x branch
+//	2. Improve the module's maintainability by reducing the storage
+//		paths to a single mechanism.
+//	3. Use the same single mechanism to support "private" and "user" data.
+//	4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData)
+//	5. Avoid exposing implementation details on user objects (eg. expando properties)
+//	6. Provide a clear path for implementation upgrade to WeakMap in 2014
+
+var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/,
+	rmultiDash = /[A-Z]/g;
+
+function getData( data ) {
+	if ( data === "true" ) {
+		return true;
+	}
+
+	if ( data === "false" ) {
+		return false;
+	}
+
+	if ( data === "null" ) {
+		return null;
+	}
+
+	// Only convert to a number if it doesn't change the string
+	if ( data === +data + "" ) {
+		return +data;
+	}
+
+	if ( rbrace.test( data ) ) {
+		return JSON.parse( data );
+	}
+
+	return data;
+}
+
+function dataAttr( elem, key, data ) {
+	var name;
+
+	// If nothing was found internally, try to fetch any
+	// data from the HTML5 data-* attribute
+	if ( data === undefined && elem.nodeType === 1 ) {
+		name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase();
+		data = elem.getAttribute( name );
+
+		if ( typeof data === "string" ) {
+			try {
+				data = getData( data );
+			} catch ( e ) {}
+
+			// Make sure we set the data so it isn't changed later
+			dataUser.set( elem, key, data );
+		} else {
+			data = undefined;
+		}
+	}
+	return data;
+}
+
+jQuery.extend( {
+	hasData: function( elem ) {
+		return dataUser.hasData( elem ) || dataPriv.hasData( elem );
+	},
+
+	data: function( elem, name, data ) {
+		return dataUser.access( elem, name, data );
+	},
+
+	removeData: function( elem, name ) {
+		dataUser.remove( elem, name );
+	},
+
+	// TODO: Now that all calls to _data and _removeData have been replaced
+	// with direct calls to dataPriv methods, these can be deprecated.
+	_data: function( elem, name, data ) {
+		return dataPriv.access( elem, name, data );
+	},
+
+	_removeData: function( elem, name ) {
+		dataPriv.remove( elem, name );
+	}
+} );
+
+jQuery.fn.extend( {
+	data: function( key, value ) {
+		var i, name, data,
+			elem = this[ 0 ],
+			attrs = elem && elem.attributes;
+
+		// Gets all values
+		if ( key === undefined ) {
+			if ( this.length ) {
+				data = dataUser.get( elem );
+
+				if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) {
+					i = attrs.length;
+					while ( i-- ) {
+
+						// Support: IE 11 only
+						// The attrs elements can be null (#14894)
+						if ( attrs[ i ] ) {
+							name = attrs[ i ].name;
+							if ( name.indexOf( "data-" ) === 0 ) {
+								name = camelCase( name.slice( 5 ) );
+								dataAttr( elem, name, data[ name ] );
+							}
+						}
+					}
+					dataPriv.set( elem, "hasDataAttrs", true );
+				}
+			}
+
+			return data;
+		}
+
+		// Sets multiple values
+		if ( typeof key === "object" ) {
+			return this.each( function() {
+				dataUser.set( this, key );
+			} );
+		}
+
+		return access( this, function( value ) {
+			var data;
+
+			// The calling jQuery object (element matches) is not empty
+			// (and therefore has an element appears at this[ 0 ]) and the
+			// `value` parameter was not undefined. An empty jQuery object
+			// will result in `undefined` for elem = this[ 0 ] which will
+			// throw an exception if an attempt to read a data cache is made.
+			if ( elem && value === undefined ) {
+
+				// Attempt to get data from the cache
+				// The key will always be camelCased in Data
+				data = dataUser.get( elem, key );
+				if ( data !== undefined ) {
+					return data;
+				}
+
+				// Attempt to "discover" the data in
+				// HTML5 custom data-* attrs
+				data = dataAttr( elem, key );
+				if ( data !== undefined ) {
+					return data;
+				}
+
+				// We tried really hard, but the data doesn't exist.
+				return;
+			}
+
+			// Set the data...
+			this.each( function() {
+
+				// We always store the camelCased key
+				dataUser.set( this, key, value );
+			} );
+		}, null, value, arguments.length > 1, null, true );
+	},
+
+	removeData: function( key ) {
+		return this.each( function() {
+			dataUser.remove( this, key );
+		} );
+	}
+} );
+
+
+jQuery.extend( {
+	queue: function( elem, type, data ) {
+		var queue;
+
+		if ( elem ) {
+			type = ( type || "fx" ) + "queue";
+			queue = dataPriv.get( elem, type );
+
+			// Speed up dequeue by getting out quickly if this is just a lookup
+			if ( data ) {
+				if ( !queue || Array.isArray( data ) ) {
+					queue = dataPriv.access( elem, type, jQuery.makeArray( data ) );
+				} else {
+					queue.push( data );
+				}
+			}
+			return queue || [];
+		}
+	},
+
+	dequeue: function( elem, type ) {
+		type = type || "fx";
+
+		var queue = jQuery.queue( elem, type ),
+			startLength = queue.length,
+			fn = queue.shift(),
+			hooks = jQuery._queueHooks( elem, type ),
+			next = function() {
+				jQuery.dequeue( elem, type );
+			};
+
+		// If the fx queue is dequeued, always remove the progress sentinel
+		if ( fn === "inprogress" ) {
+			fn = queue.shift();
+			startLength--;
+		}
+
+		if ( fn ) {
+
+			// Add a progress sentinel to prevent the fx queue from being
+			// automatically dequeued
+			if ( type === "fx" ) {
+				queue.unshift( "inprogress" );
+			}
+
+			// Clear up the last queue stop function
+			delete hooks.stop;
+			fn.call( elem, next, hooks );
+		}
+
+		if ( !startLength && hooks ) {
+			hooks.empty.fire();
+		}
+	},
+
+	// Not public - generate a queueHooks object, or return the current one
+	_queueHooks: function( elem, type ) {
+		var key = type + "queueHooks";
+		return dataPriv.get( elem, key ) || dataPriv.access( elem, key, {
+			empty: jQuery.Callbacks( "once memory" ).add( function() {
+				dataPriv.remove( elem, [ type + "queue", key ] );
+			} )
+		} );
+	}
+} );
+
+jQuery.fn.extend( {
+	queue: function( type, data ) {
+		var setter = 2;
+
+		if ( typeof type !== "string" ) {
+			data = type;
+			type = "fx";
+			setter--;
+		}
+
+		if ( arguments.length < setter ) {
+			return jQuery.queue( this[ 0 ], type );
+		}
+
+		return data === undefined ?
+			this :
+			this.each( function() {
+				var queue = jQuery.queue( this, type, data );
+
+				// Ensure a hooks for this queue
+				jQuery._queueHooks( this, type );
+
+				if ( type === "fx" && queue[ 0 ] !== "inprogress" ) {
+					jQuery.dequeue( this, type );
+				}
+			} );
+	},
+	dequeue: function( type ) {
+		return this.each( function() {
+			jQuery.dequeue( this, type );
+		} );
+	},
+	clearQueue: function( type ) {
+		return this.queue( type || "fx", [] );
+	},
+
+	// Get a promise resolved when queues of a certain type
+	// are emptied (fx is the type by default)
+	promise: function( type, obj ) {
+		var tmp,
+			count = 1,
+			defer = jQuery.Deferred(),
+			elements = this,
+			i = this.length,
+			resolve = function() {
+				if ( !( --count ) ) {
+					defer.resolveWith( elements, [ elements ] );
+				}
+			};
+
+		if ( typeof type !== "string" ) {
+			obj = type;
+			type = undefined;
+		}
+		type = type || "fx";
+
+		while ( i-- ) {
+			tmp = dataPriv.get( elements[ i ], type + "queueHooks" );
+			if ( tmp && tmp.empty ) {
+				count++;
+				tmp.empty.add( resolve );
+			}
+		}
+		resolve();
+		return defer.promise( obj );
+	}
+} );
+var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source;
+
+var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" );
+
+
+var cssExpand = [ "Top", "Right", "Bottom", "Left" ];
+
+var documentElement = document.documentElement;
+
+
+
+	var isAttached = function( elem ) {
+			return jQuery.contains( elem.ownerDocument, elem );
+		},
+		composed = { composed: true };
+
+	// Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only
+	// Check attachment across shadow DOM boundaries when possible (gh-3504)
+	// Support: iOS 10.0-10.2 only
+	// Early iOS 10 versions support `attachShadow` but not `getRootNode`,
+	// leading to errors. We need to check for `getRootNode`.
+	if ( documentElement.getRootNode ) {
+		isAttached = function( elem ) {
+			return jQuery.contains( elem.ownerDocument, elem ) ||
+				elem.getRootNode( composed ) === elem.ownerDocument;
+		};
+	}
+var isHiddenWithinTree = function( elem, el ) {
+
+		// isHiddenWithinTree might be called from jQuery#filter function;
+		// in that case, element will be second argument
+		elem = el || elem;
+
+		// Inline style trumps all
+		return elem.style.display === "none" ||
+			elem.style.display === "" &&
+
+			// Otherwise, check computed style
+			// Support: Firefox <=43 - 45
+			// Disconnected elements can have computed display: none, so first confirm that elem is
+			// in the document.
+			isAttached( elem ) &&
+
+			jQuery.css( elem, "display" ) === "none";
+	};
+
+var swap = function( elem, options, callback, args ) {
+	var ret, name,
+		old = {};
+
+	// Remember the old values, and insert the new ones
+	for ( name in options ) {
+		old[ name ] = elem.style[ name ];
+		elem.style[ name ] = options[ name ];
+	}
+
+	ret = callback.apply( elem, args || [] );
+
+	// Revert the old values
+	for ( name in options ) {
+		elem.style[ name ] = old[ name ];
+	}
+
+	return ret;
+};
+
+
+
+
+function adjustCSS( elem, prop, valueParts, tween ) {
+	var adjusted, scale,
+		maxIterations = 20,
+		currentValue = tween ?
+			function() {
+				return tween.cur();
+			} :
+			function() {
+				return jQuery.css( elem, prop, "" );
+			},
+		initial = currentValue(),
+		unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ),
+
+		// Starting value computation is required for potential unit mismatches
+		initialInUnit = elem.nodeType &&
+			( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) &&
+			rcssNum.exec( jQuery.css( elem, prop ) );
+
+	if ( initialInUnit && initialInUnit[ 3 ] !== unit ) {
+
+		// Support: Firefox <=54
+		// Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144)
+		initial = initial / 2;
+
+		// Trust units reported by jQuery.css
+		unit = unit || initialInUnit[ 3 ];
+
+		// Iteratively approximate from a nonzero starting point
+		initialInUnit = +initial || 1;
+
+		while ( maxIterations-- ) {
+
+			// Evaluate and update our best guess (doubling guesses that zero out).
+			// Finish if the scale equals or crosses 1 (making the old*new product non-positive).
+			jQuery.style( elem, prop, initialInUnit + unit );
+			if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) {
+				maxIterations = 0;
+			}
+			initialInUnit = initialInUnit / scale;
+
+		}
+
+		initialInUnit = initialInUnit * 2;
+		jQuery.style( elem, prop, initialInUnit + unit );
+
+		// Make sure we update the tween properties later on
+		valueParts = valueParts || [];
+	}
+
+	if ( valueParts ) {
+		initialInUnit = +initialInUnit || +initial || 0;
+
+		// Apply relative offset (+=/-=) if specified
+		adjusted = valueParts[ 1 ] ?
+			initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] :
+			+valueParts[ 2 ];
+		if ( tween ) {
+			tween.unit = unit;
+			tween.start = initialInUnit;
+			tween.end = adjusted;
+		}
+	}
+	return adjusted;
+}
+
+
+var defaultDisplayMap = {};
+
+function getDefaultDisplay( elem ) {
+	var temp,
+		doc = elem.ownerDocument,
+		nodeName = elem.nodeName,
+		display = defaultDisplayMap[ nodeName ];
+
+	if ( display ) {
+		return display;
+	}
+
+	temp = doc.body.appendChild( doc.createElement( nodeName ) );
+	display = jQuery.css( temp, "display" );
+
+	temp.parentNode.removeChild( temp );
+
+	if ( display === "none" ) {
+		display = "block";
+	}
+	defaultDisplayMap[ nodeName ] = display;
+
+	return display;
+}
+
+function showHide( elements, show ) {
+	var display, elem,
+		values = [],
+		index = 0,
+		length = elements.length;
+
+	// Determine new display value for elements that need to change
+	for ( ; index < length; index++ ) {
+		elem = elements[ index ];
+		if ( !elem.style ) {
+			continue;
+		}
+
+		display = elem.style.display;
+		if ( show ) {
+
+			// Since we force visibility upon cascade-hidden elements, an immediate (and slow)
+			// check is required in this first loop unless we have a nonempty display value (either
+			// inline or about-to-be-restored)
+			if ( display === "none" ) {
+				values[ index ] = dataPriv.get( elem, "display" ) || null;
+				if ( !values[ index ] ) {
+					elem.style.display = "";
+				}
+			}
+			if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) {
+				values[ index ] = getDefaultDisplay( elem );
+			}
+		} else {
+			if ( display !== "none" ) {
+				values[ index ] = "none";
+
+				// Remember what we're overwriting
+				dataPriv.set( elem, "display", display );
+			}
+		}
+	}
+
+	// Set the display of the elements in a second loop to avoid constant reflow
+	for ( index = 0; index < length; index++ ) {
+		if ( values[ index ] != null ) {
+			elements[ index ].style.display = values[ index ];
+		}
+	}
+
+	return elements;
+}
+
+jQuery.fn.extend( {
+	show: function() {
+		return showHide( this, true );
+	},
+	hide: function() {
+		return showHide( this );
+	},
+	toggle: function( state ) {
+		if ( typeof state === "boolean" ) {
+			return state ? this.show() : this.hide();
+		}
+
+		return this.each( function() {
+			if ( isHiddenWithinTree( this ) ) {
+				jQuery( this ).show();
+			} else {
+				jQuery( this ).hide();
+			}
+		} );
+	}
+} );
+var rcheckableType = ( /^(?:checkbox|radio)$/i );
+
+var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i );
+
+var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i );
+
+
+
+// We have to close these tags to support XHTML (#13200)
+var wrapMap = {
+
+	// Support: IE <=9 only
+	option: [ 1, "<select multiple='multiple'>", "</select>" ],
+
+	// XHTML parsers do not magically insert elements in the
+	// same way that tag soup parsers do. So we cannot shorten
+	// this by omitting <tbody> or other required elements.
+	thead: [ 1, "<table>", "</table>" ],
+	col: [ 2, "<table><colgroup>", "</colgroup></table>" ],
+	tr: [ 2, "<table><tbody>", "</tbody></table>" ],
+	td: [ 3, "<table><tbody><tr>", "</tr></tbody></table>" ],
+
+	_default: [ 0, "", "" ]
+};
+
+// Support: IE <=9 only
+wrapMap.optgroup = wrapMap.option;
+
+wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead;
+wrapMap.th = wrapMap.td;
+
+
+function getAll( context, tag ) {
+
+	// Support: IE <=9 - 11 only
+	// Use typeof to avoid zero-argument method invocation on host objects (#15151)
+	var ret;
+
+	if ( typeof context.getElementsByTagName !== "undefined" ) {
+		ret = context.getElementsByTagName( tag || "*" );
+
+	} else if ( typeof context.querySelectorAll !== "undefined" ) {
+		ret = context.querySelectorAll( tag || "*" );
+
+	} else {
+		ret = [];
+	}
+
+	if ( tag === undefined || tag && nodeName( context, tag ) ) {
+		return jQuery.merge( [ context ], ret );
+	}
+
+	return ret;
+}
+
+
+// Mark scripts as having already been evaluated
+function setGlobalEval( elems, refElements ) {
+	var i = 0,
+		l = elems.length;
+
+	for ( ; i < l; i++ ) {
+		dataPriv.set(
+			elems[ i ],
+			"globalEval",
+			!refElements || dataPriv.get( refElements[ i ], "globalEval" )
+		);
+	}
+}
+
+
+var rhtml = /<|&#?\w+;/;
+
+function buildFragment( elems, context, scripts, selection, ignored ) {
+	var elem, tmp, tag, wrap, attached, j,
+		fragment = context.createDocumentFragment(),
+		nodes = [],
+		i = 0,
+		l = elems.length;
+
+	for ( ; i < l; i++ ) {
+		elem = elems[ i ];
+
+		if ( elem || elem === 0 ) {
+
+			// Add nodes directly
+			if ( toType( elem ) === "object" ) {
+
+				// Support: Android <=4.0 only, PhantomJS 1 only
+				// push.apply(_, arraylike) throws on ancient WebKit
+				jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem );
+
+			// Convert non-html into a text node
+			} else if ( !rhtml.test( elem ) ) {
+				nodes.push( context.createTextNode( elem ) );
+
+			// Convert html into DOM nodes
+			} else {
+				tmp = tmp || fragment.appendChild( context.createElement( "div" ) );
+
+				// Deserialize a standard representation
+				tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase();
+				wrap = wrapMap[ tag ] || wrapMap._default;
+				tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ];
+
+				// Descend through wrappers to the right content
+				j = wrap[ 0 ];
+				while ( j-- ) {
+					tmp = tmp.lastChild;
+				}
+
+				// Support: Android <=4.0 only, PhantomJS 1 only
+				// push.apply(_, arraylike) throws on ancient WebKit
+				jQuery.merge( nodes, tmp.childNodes );
+
+				// Remember the top-level container
+				tmp = fragment.firstChild;
+
+				// Ensure the created nodes are orphaned (#12392)
+				tmp.textContent = "";
+			}
+		}
+	}
+
+	// Remove wrapper from fragment
+	fragment.textContent = "";
+
+	i = 0;
+	while ( ( elem = nodes[ i++ ] ) ) {
+
+		// Skip elements already in the context collection (trac-4087)
+		if ( selection && jQuery.inArray( elem, selection ) > -1 ) {
+			if ( ignored ) {
+				ignored.push( elem );
+			}
+			continue;
+		}
+
+		attached = isAttached( elem );
+
+		// Append to fragment
+		tmp = getAll( fragment.appendChild( elem ), "script" );
+
+		// Preserve script evaluation history
+		if ( attached ) {
+			setGlobalEval( tmp );
+		}
+
+		// Capture executables
+		if ( scripts ) {
+			j = 0;
+			while ( ( elem = tmp[ j++ ] ) ) {
+				if ( rscriptType.test( elem.type || "" ) ) {
+					scripts.push( elem );
+				}
+			}
+		}
+	}
+
+	return fragment;
+}
+
+
+( function() {
+	var fragment = document.createDocumentFragment(),
+		div = fragment.appendChild( document.createElement( "div" ) ),
+		input = document.createElement( "input" );
+
+	// Support: Android 4.0 - 4.3 only
+	// Check state lost if the name is set (#11217)
+	// Support: Windows Web Apps (WWA)
+	// `name` and `type` must use .setAttribute for WWA (#14901)
+	input.setAttribute( "type", "radio" );
+	input.setAttribute( "checked", "checked" );
+	input.setAttribute( "name", "t" );
+
+	div.appendChild( input );
+
+	// Support: Android <=4.1 only
+	// Older WebKit doesn't clone checked state correctly in fragments
+	support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked;
+
+	// Support: IE <=11 only
+	// Make sure textarea (and checkbox) defaultValue is properly cloned
+	div.innerHTML = "<textarea>x</textarea>";
+	support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue;
+} )();
+
+
+var
+	rkeyEvent = /^key/,
+	rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/,
+	rtypenamespace = /^([^.]*)(?:\.(.+)|)/;
+
+function returnTrue() {
+	return true;
+}
+
+function returnFalse() {
+	return false;
+}
+
+// Support: IE <=9 - 11+
+// focus() and blur() are asynchronous, except when they are no-op.
+// So expect focus to be synchronous when the element is already active,
+// and blur to be synchronous when the element is not already active.
+// (focus and blur are always synchronous in other supported browsers,
+// this just defines when we can count on it).
+function expectSync( elem, type ) {
+	return ( elem === safeActiveElement() ) === ( type === "focus" );
+}
+
+// Support: IE <=9 only
+// Accessing document.activeElement can throw unexpectedly
+// https://bugs.jquery.com/ticket/13393
+function safeActiveElement() {
+	try {
+		return document.activeElement;
+	} catch ( err ) { }
+}
+
+function on( elem, types, selector, data, fn, one ) {
+	var origFn, type;
+
+	// Types can be a map of types/handlers
+	if ( typeof types === "object" ) {
+
+		// ( types-Object, selector, data )
+		if ( typeof selector !== "string" ) {
+
+			// ( types-Object, data )
+			data = data || selector;
+			selector = undefined;
+		}
+		for ( type in types ) {
+			on( elem, type, selector, data, types[ type ], one );
+		}
+		return elem;
+	}
+
+	if ( data == null && fn == null ) {
+
+		// ( types, fn )
+		fn = selector;
+		data = selector = undefined;
+	} else if ( fn == null ) {
+		if ( typeof selector === "string" ) {
+
+			// ( types, selector, fn )
+			fn = data;
+			data = undefined;
+		} else {
+
+			// ( types, data, fn )
+			fn = data;
+			data = selector;
+			selector = undefined;
+		}
+	}
+	if ( fn === false ) {
+		fn = returnFalse;
+	} else if ( !fn ) {
+		return elem;
+	}
+
+	if ( one === 1 ) {
+		origFn = fn;
+		fn = function( event ) {
+
+			// Can use an empty set, since event contains the info
+			jQuery().off( event );
+			return origFn.apply( this, arguments );
+		};
+
+		// Use same guid so caller can remove using origFn
+		fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ );
+	}
+	return elem.each( function() {
+		jQuery.event.add( this, types, fn, data, selector );
+	} );
+}
+
+/*
+ * Helper functions for managing events -- not part of the public interface.
+ * Props to Dean Edwards' addEvent library for many of the ideas.
+ */
+jQuery.event = {
+
+	global: {},
+
+	add: function( elem, types, handler, data, selector ) {
+
+		var handleObjIn, eventHandle, tmp,
+			events, t, handleObj,
+			special, handlers, type, namespaces, origType,
+			elemData = dataPriv.get( elem );
+
+		// Don't attach events to noData or text/comment nodes (but allow plain objects)
+		if ( !elemData ) {
+			return;
+		}
+
+		// Caller can pass in an object of custom data in lieu of the handler
+		if ( handler.handler ) {
+			handleObjIn = handler;
+			handler = handleObjIn.handler;
+			selector = handleObjIn.selector;
+		}
+
+		// Ensure that invalid selectors throw exceptions at attach time
+		// Evaluate against documentElement in case elem is a non-element node (e.g., document)
+		if ( selector ) {
+			jQuery.find.matchesSelector( documentElement, selector );
+		}
+
+		// Make sure that the handler has a unique ID, used to find/remove it later
+		if ( !handler.guid ) {
+			handler.guid = jQuery.guid++;
+		}
+
+		// Init the element's event structure and main handler, if this is the first
+		if ( !( events = elemData.events ) ) {
+			events = elemData.events = {};
+		}
+		if ( !( eventHandle = elemData.handle ) ) {
+			eventHandle = elemData.handle = function( e ) {
+
+				// Discard the second event of a jQuery.event.trigger() and
+				// when an event is called after a page has unloaded
+				return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ?
+					jQuery.event.dispatch.apply( elem, arguments ) : undefined;
+			};
+		}
+
+		// Handle multiple events separated by a space
+		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
+		t = types.length;
+		while ( t-- ) {
+			tmp = rtypenamespace.exec( types[ t ] ) || [];
+			type = origType = tmp[ 1 ];
+			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
+
+			// There *must* be a type, no attaching namespace-only handlers
+			if ( !type ) {
+				continue;
+			}
+
+			// If event changes its type, use the special event handlers for the changed type
+			special = jQuery.event.special[ type ] || {};
+
+			// If selector defined, determine special event api type, otherwise given type
+			type = ( selector ? special.delegateType : special.bindType ) || type;
+
+			// Update special based on newly reset type
+			special = jQuery.event.special[ type ] || {};
+
+			// handleObj is passed to all event handlers
+			handleObj = jQuery.extend( {
+				type: type,
+				origType: origType,
+				data: data,
+				handler: handler,
+				guid: handler.guid,
+				selector: selector,
+				needsContext: selector && jQuery.expr.match.needsContext.test( selector ),
+				namespace: namespaces.join( "." )
+			}, handleObjIn );
+
+			// Init the event handler queue if we're the first
+			if ( !( handlers = events[ type ] ) ) {
+				handlers = events[ type ] = [];
+				handlers.delegateCount = 0;
+
+				// Only use addEventListener if the special events handler returns false
+				if ( !special.setup ||
+					special.setup.call( elem, data, namespaces, eventHandle ) === false ) {
+
+					if ( elem.addEventListener ) {
+						elem.addEventListener( type, eventHandle );
+					}
+				}
+			}
+
+			if ( special.add ) {
+				special.add.call( elem, handleObj );
+
+				if ( !handleObj.handler.guid ) {
+					handleObj.handler.guid = handler.guid;
+				}
+			}
+
+			// Add to the element's handler list, delegates in front
+			if ( selector ) {
+				handlers.splice( handlers.delegateCount++, 0, handleObj );
+			} else {
+				handlers.push( handleObj );
+			}
+
+			// Keep track of which events have ever been used, for event optimization
+			jQuery.event.global[ type ] = true;
+		}
+
+	},
+
+	// Detach an event or set of events from an element
+	remove: function( elem, types, handler, selector, mappedTypes ) {
+
+		var j, origCount, tmp,
+			events, t, handleObj,
+			special, handlers, type, namespaces, origType,
+			elemData = dataPriv.hasData( elem ) && dataPriv.get( elem );
+
+		if ( !elemData || !( events = elemData.events ) ) {
+			return;
+		}
+
+		// Once for each type.namespace in types; type may be omitted
+		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
+		t = types.length;
+		while ( t-- ) {
+			tmp = rtypenamespace.exec( types[ t ] ) || [];
+			type = origType = tmp[ 1 ];
+			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
+
+			// Unbind all events (on this namespace, if provided) for the element
+			if ( !type ) {
+				for ( type in events ) {
+					jQuery.event.remove( elem, type + types[ t ], handler, selector, true );
+				}
+				continue;
+			}
+
+			special = jQuery.event.special[ type ] || {};
+			type = ( selector ? special.delegateType : special.bindType ) || type;
+			handlers = events[ type ] || [];
+			tmp = tmp[ 2 ] &&
+				new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" );
+
+			// Remove matching events
+			origCount = j = handlers.length;
+			while ( j-- ) {
+				handleObj = handlers[ j ];
+
+				if ( ( mappedTypes || origType === handleObj.origType ) &&
+					( !handler || handler.guid === handleObj.guid ) &&
+					( !tmp || tmp.test( handleObj.namespace ) ) &&
+					( !selector || selector === handleObj.selector ||
+						selector === "**" && handleObj.selector ) ) {
+					handlers.splice( j, 1 );
+
+					if ( handleObj.selector ) {
+						handlers.delegateCount--;
+					}
+					if ( special.remove ) {
+						special.remove.call( elem, handleObj );
+					}
+				}
+			}
+
+			// Remove generic event handler if we removed something and no more handlers exist
+			// (avoids potential for endless recursion during removal of special event handlers)
+			if ( origCount && !handlers.length ) {
+				if ( !special.teardown ||
+					special.teardown.call( elem, namespaces, elemData.handle ) === false ) {
+
+					jQuery.removeEvent( elem, type, elemData.handle );
+				}
+
+				delete events[ type ];
+			}
+		}
+
+		// Remove data and the expando if it's no longer used
+		if ( jQuery.isEmptyObject( events ) ) {
+			dataPriv.remove( elem, "handle events" );
+		}
+	},
+
+	dispatch: function( nativeEvent ) {
+
+		// Make a writable jQuery.Event from the native event object
+		var event = jQuery.event.fix( nativeEvent );
+
+		var i, j, ret, matched, handleObj, handlerQueue,
+			args = new Array( arguments.length ),
+			handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [],
+			special = jQuery.event.special[ event.type ] || {};
+
+		// Use the fix-ed jQuery.Event rather than the (read-only) native event
+		args[ 0 ] = event;
+
+		for ( i = 1; i < arguments.length; i++ ) {
+			args[ i ] = arguments[ i ];
+		}
+
+		event.delegateTarget = this;
+
+		// Call the preDispatch hook for the mapped type, and let it bail if desired
+		if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) {
+			return;
+		}
+
+		// Determine handlers
+		handlerQueue = jQuery.event.handlers.call( this, event, handlers );
+
+		// Run delegates first; they may want to stop propagation beneath us
+		i = 0;
+		while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) {
+			event.currentTarget = matched.elem;
+
+			j = 0;
+			while ( ( handleObj = matched.handlers[ j++ ] ) &&
+				!event.isImmediatePropagationStopped() ) {
+
+				// If the event is namespaced, then each handler is only invoked if it is
+				// specially universal or its namespaces are a superset of the event's.
+				if ( !event.rnamespace || handleObj.namespace === false ||
+					event.rnamespace.test( handleObj.namespace ) ) {
+
+					event.handleObj = handleObj;
+					event.data = handleObj.data;
+
+					ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle ||
+						handleObj.handler ).apply( matched.elem, args );
+
+					if ( ret !== undefined ) {
+						if ( ( event.result = ret ) === false ) {
+							event.preventDefault();
+							event.stopPropagation();
+						}
+					}
+				}
+			}
+		}
+
+		// Call the postDispatch hook for the mapped type
+		if ( special.postDispatch ) {
+			special.postDispatch.call( this, event );
+		}
+
+		return event.result;
+	},
+
+	handlers: function( event, handlers ) {
+		var i, handleObj, sel, matchedHandlers, matchedSelectors,
+			handlerQueue = [],
+			delegateCount = handlers.delegateCount,
+			cur = event.target;
+
+		// Find delegate handlers
+		if ( delegateCount &&
+
+			// Support: IE <=9
+			// Black-hole SVG <use> instance trees (trac-13180)
+			cur.nodeType &&
+
+			// Support: Firefox <=42
+			// Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861)
+			// https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click
+			// Support: IE 11 only
+			// ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343)
+			!( event.type === "click" && event.button >= 1 ) ) {
+
+			for ( ; cur !== this; cur = cur.parentNode || this ) {
+
+				// Don't check non-elements (#13208)
+				// Don't process clicks on disabled elements (#6911, #8165, #11382, #11764)
+				if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) {
+					matchedHandlers = [];
+					matchedSelectors = {};
+					for ( i = 0; i < delegateCount; i++ ) {
+						handleObj = handlers[ i ];
+
+						// Don't conflict with Object.prototype properties (#13203)
+						sel = handleObj.selector + " ";
+
+						if ( matchedSelectors[ sel ] === undefined ) {
+							matchedSelectors[ sel ] = handleObj.needsContext ?
+								jQuery( sel, this ).index( cur ) > -1 :
+								jQuery.find( sel, this, null, [ cur ] ).length;
+						}
+						if ( matchedSelectors[ sel ] ) {
+							matchedHandlers.push( handleObj );
+						}
+					}
+					if ( matchedHandlers.length ) {
+						handlerQueue.push( { elem: cur, handlers: matchedHandlers } );
+					}
+				}
+			}
+		}
+
+		// Add the remaining (directly-bound) handlers
+		cur = this;
+		if ( delegateCount < handlers.length ) {
+			handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } );
+		}
+
+		return handlerQueue;
+	},
+
+	addProp: function( name, hook ) {
+		Object.defineProperty( jQuery.Event.prototype, name, {
+			enumerable: true,
+			configurable: true,
+
+			get: isFunction( hook ) ?
+				function() {
+					if ( this.originalEvent ) {
+							return hook( this.originalEvent );
+					}
+				} :
+				function() {
+					if ( this.originalEvent ) {
+							return this.originalEvent[ name ];
+					}
+				},
+
+			set: function( value ) {
+				Object.defineProperty( this, name, {
+					enumerable: true,
+					configurable: true,
+					writable: true,
+					value: value
+				} );
+			}
+		} );
+	},
+
+	fix: function( originalEvent ) {
+		return originalEvent[ jQuery.expando ] ?
+			originalEvent :
+			new jQuery.Event( originalEvent );
+	},
+
+	special: {
+		load: {
+
+			// Prevent triggered image.load events from bubbling to window.load
+			noBubble: true
+		},
+		click: {
+
+			// Utilize native event to ensure correct state for checkable inputs
+			setup: function( data ) {
+
+				// For mutual compressibility with _default, replace `this` access with a local var.
+				// `|| data` is dead code meant only to preserve the variable through minification.
+				var el = this || data;
+
+				// Claim the first handler
+				if ( rcheckableType.test( el.type ) &&
+					el.click && nodeName( el, "input" ) ) {
+
+					// dataPriv.set( el, "click", ... )
+					leverageNative( el, "click", returnTrue );
+				}
+
+				// Return false to allow normal processing in the caller
+				return false;
+			},
+			trigger: function( data ) {
+
+				// For mutual compressibility with _default, replace `this` access with a local var.
+				// `|| data` is dead code meant only to preserve the variable through minification.
+				var el = this || data;
+
+				// Force setup before triggering a click
+				if ( rcheckableType.test( el.type ) &&
+					el.click && nodeName( el, "input" ) ) {
+
+					leverageNative( el, "click" );
+				}
+
+				// Return non-false to allow normal event-path propagation
+				return true;
+			},
+
+			// For cross-browser consistency, suppress native .click() on links
+			// Also prevent it if we're currently inside a leveraged native-event stack
+			_default: function( event ) {
+				var target = event.target;
+				return rcheckableType.test( target.type ) &&
+					target.click && nodeName( target, "input" ) &&
+					dataPriv.get( target, "click" ) ||
+					nodeName( target, "a" );
+			}
+		},
+
+		beforeunload: {
+			postDispatch: function( event ) {
+
+				// Support: Firefox 20+
+				// Firefox doesn't alert if the returnValue field is not set.
+				if ( event.result !== undefined && event.originalEvent ) {
+					event.originalEvent.returnValue = event.result;
+				}
+			}
+		}
+	}
+};
+
+// Ensure the presence of an event listener that handles manually-triggered
+// synthetic events by interrupting progress until reinvoked in response to
+// *native* events that it fires directly, ensuring that state changes have
+// already occurred before other listeners are invoked.
+function leverageNative( el, type, expectSync ) {
+
+	// Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add
+	if ( !expectSync ) {
+		if ( dataPriv.get( el, type ) === undefined ) {
+			jQuery.event.add( el, type, returnTrue );
+		}
+		return;
+	}
+
+	// Register the controller as a special universal handler for all event namespaces
+	dataPriv.set( el, type, false );
+	jQuery.event.add( el, type, {
+		namespace: false,
+		handler: function( event ) {
+			var notAsync, result,
+				saved = dataPriv.get( this, type );
+
+			if ( ( event.isTrigger & 1 ) && this[ type ] ) {
+
+				// Interrupt processing of the outer synthetic .trigger()ed event
+				// Saved data should be false in such cases, but might be a leftover capture object
+				// from an async native handler (gh-4350)
+				if ( !saved.length ) {
+
+					// Store arguments for use when handling the inner native event
+					// There will always be at least one argument (an event object), so this array
+					// will not be confused with a leftover capture object.
+					saved = slice.call( arguments );
+					dataPriv.set( this, type, saved );
+
+					// Trigger the native event and capture its result
+					// Support: IE <=9 - 11+
+					// focus() and blur() are asynchronous
+					notAsync = expectSync( this, type );
+					this[ type ]();
+					result = dataPriv.get( this, type );
+					if ( saved !== result || notAsync ) {
+						dataPriv.set( this, type, false );
+					} else {
+						result = {};
+					}
+					if ( saved !== result ) {
+
+						// Cancel the outer synthetic event
+						event.stopImmediatePropagation();
+						event.preventDefault();
+						return result.value;
+					}
+
+				// If this is an inner synthetic event for an event with a bubbling surrogate
+				// (focus or blur), assume that the surrogate already propagated from triggering the
+				// native event and prevent that from happening again here.
+				// This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the
+				// bubbling surrogate propagates *after* the non-bubbling base), but that seems
+				// less bad than duplication.
+				} else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) {
+					event.stopPropagation();
+				}
+
+			// If this is a native event triggered above, everything is now in order
+			// Fire an inner synthetic event with the original arguments
+			} else if ( saved.length ) {
+
+				// ...and capture the result
+				dataPriv.set( this, type, {
+					value: jQuery.event.trigger(
+
+						// Support: IE <=9 - 11+
+						// Extend with the prototype to reset the above stopImmediatePropagation()
+						jQuery.extend( saved[ 0 ], jQuery.Event.prototype ),
+						saved.slice( 1 ),
+						this
+					)
+				} );
+
+				// Abort handling of the native event
+				event.stopImmediatePropagation();
+			}
+		}
+	} );
+}
+
+jQuery.removeEvent = function( elem, type, handle ) {
+
+	// This "if" is needed for plain objects
+	if ( elem.removeEventListener ) {
+		elem.removeEventListener( type, handle );
+	}
+};
+
+jQuery.Event = function( src, props ) {
+
+	// Allow instantiation without the 'new' keyword
+	if ( !( this instanceof jQuery.Event ) ) {
+		return new jQuery.Event( src, props );
+	}
+
+	// Event object
+	if ( src && src.type ) {
+		this.originalEvent = src;
+		this.type = src.type;
+
+		// Events bubbling up the document may have been marked as prevented
+		// by a handler lower down the tree; reflect the correct value.
+		this.isDefaultPrevented = src.defaultPrevented ||
+				src.defaultPrevented === undefined &&
+
+				// Support: Android <=2.3 only
+				src.returnValue === false ?
+			returnTrue :
+			returnFalse;
+
+		// Create target properties
+		// Support: Safari <=6 - 7 only
+		// Target should not be a text node (#504, #13143)
+		this.target = ( src.target && src.target.nodeType === 3 ) ?
+			src.target.parentNode :
+			src.target;
+
+		this.currentTarget = src.currentTarget;
+		this.relatedTarget = src.relatedTarget;
+
+	// Event type
+	} else {
+		this.type = src;
+	}
+
+	// Put explicitly provided properties onto the event object
+	if ( props ) {
+		jQuery.extend( this, props );
+	}
+
+	// Create a timestamp if incoming event doesn't have one
+	this.timeStamp = src && src.timeStamp || Date.now();
+
+	// Mark it as fixed
+	this[ jQuery.expando ] = true;
+};
+
+// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding
+// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html
+jQuery.Event.prototype = {
+	constructor: jQuery.Event,
+	isDefaultPrevented: returnFalse,
+	isPropagationStopped: returnFalse,
+	isImmediatePropagationStopped: returnFalse,
+	isSimulated: false,
+
+	preventDefault: function() {
+		var e = this.originalEvent;
+
+		this.isDefaultPrevented = returnTrue;
+
+		if ( e && !this.isSimulated ) {
+			e.preventDefault();
+		}
+	},
+	stopPropagation: function() {
+		var e = this.originalEvent;
+
+		this.isPropagationStopped = returnTrue;
+
+		if ( e && !this.isSimulated ) {
+			e.stopPropagation();
+		}
+	},
+	stopImmediatePropagation: function() {
+		var e = this.originalEvent;
+
+		this.isImmediatePropagationStopped = returnTrue;
+
+		if ( e && !this.isSimulated ) {
+			e.stopImmediatePropagation();
+		}
+
+		this.stopPropagation();
+	}
+};
+
+// Includes all common event props including KeyEvent and MouseEvent specific props
+jQuery.each( {
+	altKey: true,
+	bubbles: true,
+	cancelable: true,
+	changedTouches: true,
+	ctrlKey: true,
+	detail: true,
+	eventPhase: true,
+	metaKey: true,
+	pageX: true,
+	pageY: true,
+	shiftKey: true,
+	view: true,
+	"char": true,
+	code: true,
+	charCode: true,
+	key: true,
+	keyCode: true,
+	button: true,
+	buttons: true,
+	clientX: true,
+	clientY: true,
+	offsetX: true,
+	offsetY: true,
+	pointerId: true,
+	pointerType: true,
+	screenX: true,
+	screenY: true,
+	targetTouches: true,
+	toElement: true,
+	touches: true,
+
+	which: function( event ) {
+		var button = event.button;
+
+		// Add which for key events
+		if ( event.which == null && rkeyEvent.test( event.type ) ) {
+			return event.charCode != null ? event.charCode : event.keyCode;
+		}
+
+		// Add which for click: 1 === left; 2 === middle; 3 === right
+		if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) {
+			if ( button & 1 ) {
+				return 1;
+			}
+
+			if ( button & 2 ) {
+				return 3;
+			}
+
+			if ( button & 4 ) {
+				return 2;
+			}
+
+			return 0;
+		}
+
+		return event.which;
+	}
+}, jQuery.event.addProp );
+
+jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) {
+	jQuery.event.special[ type ] = {
+
+		// Utilize native event if possible so blur/focus sequence is correct
+		setup: function() {
+
+			// Claim the first handler
+			// dataPriv.set( this, "focus", ... )
+			// dataPriv.set( this, "blur", ... )
+			leverageNative( this, type, expectSync );
+
+			// Return false to allow normal processing in the caller
+			return false;
+		},
+		trigger: function() {
+
+			// Force setup before trigger
+			leverageNative( this, type );
+
+			// Return non-false to allow normal event-path propagation
+			return true;
+		},
+
+		delegateType: delegateType
+	};
+} );
+
+// Create mouseenter/leave events using mouseover/out and event-time checks
+// so that event delegation works in jQuery.
+// Do the same for pointerenter/pointerleave and pointerover/pointerout
+//
+// Support: Safari 7 only
+// Safari sends mouseenter too often; see:
+// https://bugs.chromium.org/p/chromium/issues/detail?id=470258
+// for the description of the bug (it existed in older Chrome versions as well).
+jQuery.each( {
+	mouseenter: "mouseover",
+	mouseleave: "mouseout",
+	pointerenter: "pointerover",
+	pointerleave: "pointerout"
+}, function( orig, fix ) {
+	jQuery.event.special[ orig ] = {
+		delegateType: fix,
+		bindType: fix,
+
+		handle: function( event ) {
+			var ret,
+				target = this,
+				related = event.relatedTarget,
+				handleObj = event.handleObj;
+
+			// For mouseenter/leave call the handler if related is outside the target.
+			// NB: No relatedTarget if the mouse left/entered the browser window
+			if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) {
+				event.type = handleObj.origType;
+				ret = handleObj.handler.apply( this, arguments );
+				event.type = fix;
+			}
+			return ret;
+		}
+	};
+} );
+
+jQuery.fn.extend( {
+
+	on: function( types, selector, data, fn ) {
+		return on( this, types, selector, data, fn );
+	},
+	one: function( types, selector, data, fn ) {
+		return on( this, types, selector, data, fn, 1 );
+	},
+	off: function( types, selector, fn ) {
+		var handleObj, type;
+		if ( types && types.preventDefault && types.handleObj ) {
+
+			// ( event )  dispatched jQuery.Event
+			handleObj = types.handleObj;
+			jQuery( types.delegateTarget ).off(
+				handleObj.namespace ?
+					handleObj.origType + "." + handleObj.namespace :
+					handleObj.origType,
+				handleObj.selector,
+				handleObj.handler
+			);
+			return this;
+		}
+		if ( typeof types === "object" ) {
+
+			// ( types-object [, selector] )
+			for ( type in types ) {
+				this.off( type, selector, types[ type ] );
+			}
+			return this;
+		}
+		if ( selector === false || typeof selector === "function" ) {
+
+			// ( types [, fn] )
+			fn = selector;
+			selector = undefined;
+		}
+		if ( fn === false ) {
+			fn = returnFalse;
+		}
+		return this.each( function() {
+			jQuery.event.remove( this, types, fn, selector );
+		} );
+	}
+} );
+
+
+var
+
+	/* eslint-disable max-len */
+
+	// See https://github.com/eslint/eslint/issues/3229
+	rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi,
+
+	/* eslint-enable */
+
+	// Support: IE <=10 - 11, Edge 12 - 13 only
+	// In IE/Edge using regex groups here causes severe slowdowns.
+	// See https://connect.microsoft.com/IE/feedback/details/1736512/
+	rnoInnerhtml = /<script|<style|<link/i,
+
+	// checked="checked" or checked
+	rchecked = /checked\s*(?:[^=]|=\s*.checked.)/i,
+	rcleanScript = /^\s*<!(?:\[CDATA\[|--)|(?:\]\]|--)>\s*$/g;
+
+// Prefer a tbody over its parent table for containing new rows
+function manipulationTarget( elem, content ) {
+	if ( nodeName( elem, "table" ) &&
+		nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) {
+
+		return jQuery( elem ).children( "tbody" )[ 0 ] || elem;
+	}
+
+	return elem;
+}
+
+// Replace/restore the type attribute of script elements for safe DOM manipulation
+function disableScript( elem ) {
+	elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type;
+	return elem;
+}
+function restoreScript( elem ) {
+	if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) {
+		elem.type = elem.type.slice( 5 );
+	} else {
+		elem.removeAttribute( "type" );
+	}
+
+	return elem;
+}
+
+function cloneCopyEvent( src, dest ) {
+	var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events;
+
+	if ( dest.nodeType !== 1 ) {
+		return;
+	}
+
+	// 1. Copy private data: events, handlers, etc.
+	if ( dataPriv.hasData( src ) ) {
+		pdataOld = dataPriv.access( src );
+		pdataCur = dataPriv.set( dest, pdataOld );
+		events = pdataOld.events;
+
+		if ( events ) {
+			delete pdataCur.handle;
+			pdataCur.events = {};
+
+			for ( type in events ) {
+				for ( i = 0, l = events[ type ].length; i < l; i++ ) {
+					jQuery.event.add( dest, type, events[ type ][ i ] );
+				}
+			}
+		}
+	}
+
+	// 2. Copy user data
+	if ( dataUser.hasData( src ) ) {
+		udataOld = dataUser.access( src );
+		udataCur = jQuery.extend( {}, udataOld );
+
+		dataUser.set( dest, udataCur );
+	}
+}
+
+// Fix IE bugs, see support tests
+function fixInput( src, dest ) {
+	var nodeName = dest.nodeName.toLowerCase();
+
+	// Fails to persist the checked state of a cloned checkbox or radio button.
+	if ( nodeName === "input" && rcheckableType.test( src.type ) ) {
+		dest.checked = src.checked;
+
+	// Fails to return the selected option to the default selected state when cloning options
+	} else if ( nodeName === "input" || nodeName === "textarea" ) {
+		dest.defaultValue = src.defaultValue;
+	}
+}
+
+function domManip( collection, args, callback, ignored ) {
+
+	// Flatten any nested arrays
+	args = concat.apply( [], args );
+
+	var fragment, first, scripts, hasScripts, node, doc,
+		i = 0,
+		l = collection.length,
+		iNoClone = l - 1,
+		value = args[ 0 ],
+		valueIsFunction = isFunction( value );
+
+	// We can't cloneNode fragments that contain checked, in WebKit
+	if ( valueIsFunction ||
+			( l > 1 && typeof value === "string" &&
+				!support.checkClone && rchecked.test( value ) ) ) {
+		return collection.each( function( index ) {
+			var self = collection.eq( index );
+			if ( valueIsFunction ) {
+				args[ 0 ] = value.call( this, index, self.html() );
+			}
+			domManip( self, args, callback, ignored );
+		} );
+	}
+
+	if ( l ) {
+		fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored );
+		first = fragment.firstChild;
+
+		if ( fragment.childNodes.length === 1 ) {
+			fragment = first;
+		}
+
+		// Require either new content or an interest in ignored elements to invoke the callback
+		if ( first || ignored ) {
+			scripts = jQuery.map( getAll( fragment, "script" ), disableScript );
+			hasScripts = scripts.length;
+
+			// Use the original fragment for the last item
+			// instead of the first because it can end up
+			// being emptied incorrectly in certain situations (#8070).
+			for ( ; i < l; i++ ) {
+				node = fragment;
+
+				if ( i !== iNoClone ) {
+					node = jQuery.clone( node, true, true );
+
+					// Keep references to cloned scripts for later restoration
+					if ( hasScripts ) {
+
+						// Support: Android <=4.0 only, PhantomJS 1 only
+						// push.apply(_, arraylike) throws on ancient WebKit
+						jQuery.merge( scripts, getAll( node, "script" ) );
+					}
+				}
+
+				callback.call( collection[ i ], node, i );
+			}
+
+			if ( hasScripts ) {
+				doc = scripts[ scripts.length - 1 ].ownerDocument;
+
+				// Reenable scripts
+				jQuery.map( scripts, restoreScript );
+
+				// Evaluate executable scripts on first document insertion
+				for ( i = 0; i < hasScripts; i++ ) {
+					node = scripts[ i ];
+					if ( rscriptType.test( node.type || "" ) &&
+						!dataPriv.access( node, "globalEval" ) &&
+						jQuery.contains( doc, node ) ) {
+
+						if ( node.src && ( node.type || "" ).toLowerCase()  !== "module" ) {
+
+							// Optional AJAX dependency, but won't run scripts if not present
+							if ( jQuery._evalUrl && !node.noModule ) {
+								jQuery._evalUrl( node.src, {
+									nonce: node.nonce || node.getAttribute( "nonce" )
+								} );
+							}
+						} else {
+							DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc );
+						}
+					}
+				}
+			}
+		}
+	}
+
+	return collection;
+}
+
+function remove( elem, selector, keepData ) {
+	var node,
+		nodes = selector ? jQuery.filter( selector, elem ) : elem,
+		i = 0;
+
+	for ( ; ( node = nodes[ i ] ) != null; i++ ) {
+		if ( !keepData && node.nodeType === 1 ) {
+			jQuery.cleanData( getAll( node ) );
+		}
+
+		if ( node.parentNode ) {
+			if ( keepData && isAttached( node ) ) {
+				setGlobalEval( getAll( node, "script" ) );
+			}
+			node.parentNode.removeChild( node );
+		}
+	}
+
+	return elem;
+}
+
+jQuery.extend( {
+	htmlPrefilter: function( html ) {
+		return html.replace( rxhtmlTag, "<$1></$2>" );
+	},
+
+	clone: function( elem, dataAndEvents, deepDataAndEvents ) {
+		var i, l, srcElements, destElements,
+			clone = elem.cloneNode( true ),
+			inPage = isAttached( elem );
+
+		// Fix IE cloning issues
+		if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) &&
+				!jQuery.isXMLDoc( elem ) ) {
+
+			// We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2
+			destElements = getAll( clone );
+			srcElements = getAll( elem );
+
+			for ( i = 0, l = srcElements.length; i < l; i++ ) {
+				fixInput( srcElements[ i ], destElements[ i ] );
+			}
+		}
+
+		// Copy the events from the original to the clone
+		if ( dataAndEvents ) {
+			if ( deepDataAndEvents ) {
+				srcElements = srcElements || getAll( elem );
+				destElements = destElements || getAll( clone );
+
+				for ( i = 0, l = srcElements.length; i < l; i++ ) {
+					cloneCopyEvent( srcElements[ i ], destElements[ i ] );
+				}
+			} else {
+				cloneCopyEvent( elem, clone );
+			}
+		}
+
+		// Preserve script evaluation history
+		destElements = getAll( clone, "script" );
+		if ( destElements.length > 0 ) {
+			setGlobalEval( destElements, !inPage && getAll( elem, "script" ) );
+		}
+
+		// Return the cloned set
+		return clone;
+	},
+
+	cleanData: function( elems ) {
+		var data, elem, type,
+			special = jQuery.event.special,
+			i = 0;
+
+		for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) {
+			if ( acceptData( elem ) ) {
+				if ( ( data = elem[ dataPriv.expando ] ) ) {
+					if ( data.events ) {
+						for ( type in data.events ) {
+							if ( special[ type ] ) {
+								jQuery.event.remove( elem, type );
+
+							// This is a shortcut to avoid jQuery.event.remove's overhead
+							} else {
+								jQuery.removeEvent( elem, type, data.handle );
+							}
+						}
+					}
+
+					// Support: Chrome <=35 - 45+
+					// Assign undefined instead of using delete, see Data#remove
+					elem[ dataPriv.expando ] = undefined;
+				}
+				if ( elem[ dataUser.expando ] ) {
+
+					// Support: Chrome <=35 - 45+
+					// Assign undefined instead of using delete, see Data#remove
+					elem[ dataUser.expando ] = undefined;
+				}
+			}
+		}
+	}
+} );
+
+jQuery.fn.extend( {
+	detach: function( selector ) {
+		return remove( this, selector, true );
+	},
+
+	remove: function( selector ) {
+		return remove( this, selector );
+	},
+
+	text: function( value ) {
+		return access( this, function( value ) {
+			return value === undefined ?
+				jQuery.text( this ) :
+				this.empty().each( function() {
+					if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
+						this.textContent = value;
+					}
+				} );
+		}, null, value, arguments.length );
+	},
+
+	append: function() {
+		return domManip( this, arguments, function( elem ) {
+			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
+				var target = manipulationTarget( this, elem );
+				target.appendChild( elem );
+			}
+		} );
+	},
+
+	prepend: function() {
+		return domManip( this, arguments, function( elem ) {
+			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
+				var target = manipulationTarget( this, elem );
+				target.insertBefore( elem, target.firstChild );
+			}
+		} );
+	},
+
+	before: function() {
+		return domManip( this, arguments, function( elem ) {
+			if ( this.parentNode ) {
+				this.parentNode.insertBefore( elem, this );
+			}
+		} );
+	},
+
+	after: function() {
+		return domManip( this, arguments, function( elem ) {
+			if ( this.parentNode ) {
+				this.parentNode.insertBefore( elem, this.nextSibling );
+			}
+		} );
+	},
+
+	empty: function() {
+		var elem,
+			i = 0;
+
+		for ( ; ( elem = this[ i ] ) != null; i++ ) {
+			if ( elem.nodeType === 1 ) {
+
+				// Prevent memory leaks
+				jQuery.cleanData( getAll( elem, false ) );
+
+				// Remove any remaining nodes
+				elem.textContent = "";
+			}
+		}
+
+		return this;
+	},
+
+	clone: function( dataAndEvents, deepDataAndEvents ) {
+		dataAndEvents = dataAndEvents == null ? false : dataAndEvents;
+		deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents;
+
+		return this.map( function() {
+			return jQuery.clone( this, dataAndEvents, deepDataAndEvents );
+		} );
+	},
+
+	html: function( value ) {
+		return access( this, function( value ) {
+			var elem = this[ 0 ] || {},
+				i = 0,
+				l = this.length;
+
+			if ( value === undefined && elem.nodeType === 1 ) {
+				return elem.innerHTML;
+			}
+
+			// See if we can take a shortcut and just use innerHTML
+			if ( typeof value === "string" && !rnoInnerhtml.test( value ) &&
+				!wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) {
+
+				value = jQuery.htmlPrefilter( value );
+
+				try {
+					for ( ; i < l; i++ ) {
+						elem = this[ i ] || {};
+
+						// Remove element nodes and prevent memory leaks
+						if ( elem.nodeType === 1 ) {
+							jQuery.cleanData( getAll( elem, false ) );
+							elem.innerHTML = value;
+						}
+					}
+
+					elem = 0;
+
+				// If using innerHTML throws an exception, use the fallback method
+				} catch ( e ) {}
+			}
+
+			if ( elem ) {
+				this.empty().append( value );
+			}
+		}, null, value, arguments.length );
+	},
+
+	replaceWith: function() {
+		var ignored = [];
+
+		// Make the changes, replacing each non-ignored context element with the new content
+		return domManip( this, arguments, function( elem ) {
+			var parent = this.parentNode;
+
+			if ( jQuery.inArray( this, ignored ) < 0 ) {
+				jQuery.cleanData( getAll( this ) );
+				if ( parent ) {
+					parent.replaceChild( elem, this );
+				}
+			}
+
+		// Force callback invocation
+		}, ignored );
+	}
+} );
+
+jQuery.each( {
+	appendTo: "append",
+	prependTo: "prepend",
+	insertBefore: "before",
+	insertAfter: "after",
+	replaceAll: "replaceWith"
+}, function( name, original ) {
+	jQuery.fn[ name ] = function( selector ) {
+		var elems,
+			ret = [],
+			insert = jQuery( selector ),
+			last = insert.length - 1,
+			i = 0;
+
+		for ( ; i <= last; i++ ) {
+			elems = i === last ? this : this.clone( true );
+			jQuery( insert[ i ] )[ original ]( elems );
+
+			// Support: Android <=4.0 only, PhantomJS 1 only
+			// .get() because push.apply(_, arraylike) throws on ancient WebKit
+			push.apply( ret, elems.get() );
+		}
+
+		return this.pushStack( ret );
+	};
+} );
+var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" );
+
+var getStyles = function( elem ) {
+
+		// Support: IE <=11 only, Firefox <=30 (#15098, #14150)
+		// IE throws on elements created in popups
+		// FF meanwhile throws on frame elements through "defaultView.getComputedStyle"
+		var view = elem.ownerDocument.defaultView;
+
+		if ( !view || !view.opener ) {
+			view = window;
+		}
+
+		return view.getComputedStyle( elem );
+	};
+
+var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" );
+
+
+
+( function() {
+
+	// Executing both pixelPosition & boxSizingReliable tests require only one layout
+	// so they're executed at the same time to save the second computation.
+	function computeStyleTests() {
+
+		// This is a singleton, we need to execute it only once
+		if ( !div ) {
+			return;
+		}
+
+		container.style.cssText = "position:absolute;left:-11111px;width:60px;" +
+			"margin-top:1px;padding:0;border:0";
+		div.style.cssText =
+			"position:relative;display:block;box-sizing:border-box;overflow:scroll;" +
+			"margin:auto;border:1px;padding:1px;" +
+			"width:60%;top:1%";
+		documentElement.appendChild( container ).appendChild( div );
+
+		var divStyle = window.getComputedStyle( div );
+		pixelPositionVal = divStyle.top !== "1%";
+
+		// Support: Android 4.0 - 4.3 only, Firefox <=3 - 44
+		reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12;
+
+		// Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3
+		// Some styles come back with percentage values, even though they shouldn't
+		div.style.right = "60%";
+		pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36;
+
+		// Support: IE 9 - 11 only
+		// Detect misreporting of content dimensions for box-sizing:border-box elements
+		boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36;
+
+		// Support: IE 9 only
+		// Detect overflow:scroll screwiness (gh-3699)
+		// Support: Chrome <=64
+		// Don't get tricked when zoom affects offsetWidth (gh-4029)
+		div.style.position = "absolute";
+		scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12;
+
+		documentElement.removeChild( container );
+
+		// Nullify the div so it wouldn't be stored in the memory and
+		// it will also be a sign that checks already performed
+		div = null;
+	}
+
+	function roundPixelMeasures( measure ) {
+		return Math.round( parseFloat( measure ) );
+	}
+
+	var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal,
+		reliableMarginLeftVal,
+		container = document.createElement( "div" ),
+		div = document.createElement( "div" );
+
+	// Finish early in limited (non-browser) environments
+	if ( !div.style ) {
+		return;
+	}
+
+	// Support: IE <=9 - 11 only
+	// Style of cloned element affects source element cloned (#8908)
+	div.style.backgroundClip = "content-box";
+	div.cloneNode( true ).style.backgroundClip = "";
+	support.clearCloneStyle = div.style.backgroundClip === "content-box";
+
+	jQuery.extend( support, {
+		boxSizingReliable: function() {
+			computeStyleTests();
+			return boxSizingReliableVal;
+		},
+		pixelBoxStyles: function() {
+			computeStyleTests();
+			return pixelBoxStylesVal;
+		},
+		pixelPosition: function() {
+			computeStyleTests();
+			return pixelPositionVal;
+		},
+		reliableMarginLeft: function() {
+			computeStyleTests();
+			return reliableMarginLeftVal;
+		},
+		scrollboxSize: function() {
+			computeStyleTests();
+			return scrollboxSizeVal;
+		}
+	} );
+} )();
+
+
+function curCSS( elem, name, computed ) {
+	var width, minWidth, maxWidth, ret,
+
+		// Support: Firefox 51+
+		// Retrieving style before computed somehow
+		// fixes an issue with getting wrong values
+		// on detached elements
+		style = elem.style;
+
+	computed = computed || getStyles( elem );
+
+	// getPropertyValue is needed for:
+	//   .css('filter') (IE 9 only, #12537)
+	//   .css('--customProperty) (#3144)
+	if ( computed ) {
+		ret = computed.getPropertyValue( name ) || computed[ name ];
+
+		if ( ret === "" && !isAttached( elem ) ) {
+			ret = jQuery.style( elem, name );
+		}
+
+		// A tribute to the "awesome hack by Dean Edwards"
+		// Android Browser returns percentage for some values,
+		// but width seems to be reliably pixels.
+		// This is against the CSSOM draft spec:
+		// https://drafts.csswg.org/cssom/#resolved-values
+		if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) {
+
+			// Remember the original values
+			width = style.width;
+			minWidth = style.minWidth;
+			maxWidth = style.maxWidth;
+
+			// Put in the new values to get a computed value out
+			style.minWidth = style.maxWidth = style.width = ret;
+			ret = computed.width;
+
+			// Revert the changed values
+			style.width = width;
+			style.minWidth = minWidth;
+			style.maxWidth = maxWidth;
+		}
+	}
+
+	return ret !== undefined ?
+
+		// Support: IE <=9 - 11 only
+		// IE returns zIndex value as an integer.
+		ret + "" :
+		ret;
+}
+
+
+function addGetHookIf( conditionFn, hookFn ) {
+
+	// Define the hook, we'll check on the first run if it's really needed.
+	return {
+		get: function() {
+			if ( conditionFn() ) {
+
+				// Hook not needed (or it's not possible to use it due
+				// to missing dependency), remove it.
+				delete this.get;
+				return;
+			}
+
+			// Hook needed; redefine it so that the support test is not executed again.
+			return ( this.get = hookFn ).apply( this, arguments );
+		}
+	};
+}
+
+
+var cssPrefixes = [ "Webkit", "Moz", "ms" ],
+	emptyStyle = document.createElement( "div" ).style,
+	vendorProps = {};
+
+// Return a vendor-prefixed property or undefined
+function vendorPropName( name ) {
+
+	// Check for vendor prefixed names
+	var capName = name[ 0 ].toUpperCase() + name.slice( 1 ),
+		i = cssPrefixes.length;
+
+	while ( i-- ) {
+		name = cssPrefixes[ i ] + capName;
+		if ( name in emptyStyle ) {
+			return name;
+		}
+	}
+}
+
+// Return a potentially-mapped jQuery.cssProps or vendor prefixed property
+function finalPropName( name ) {
+	var final = jQuery.cssProps[ name ] || vendorProps[ name ];
+
+	if ( final ) {
+		return final;
+	}
+	if ( name in emptyStyle ) {
+		return name;
+	}
+	return vendorProps[ name ] = vendorPropName( name ) || name;
+}
+
+
+var
+
+	// Swappable if display is none or starts with table
+	// except "table", "table-cell", or "table-caption"
+	// See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display
+	rdisplayswap = /^(none|table(?!-c[ea]).+)/,
+	rcustomProp = /^--/,
+	cssShow = { position: "absolute", visibility: "hidden", display: "block" },
+	cssNormalTransform = {
+		letterSpacing: "0",
+		fontWeight: "400"
+	};
+
+function setPositiveNumber( elem, value, subtract ) {
+
+	// Any relative (+/-) values have already been
+	// normalized at this point
+	var matches = rcssNum.exec( value );
+	return matches ?
+
+		// Guard against undefined "subtract", e.g., when used as in cssHooks
+		Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) :
+		value;
+}
+
+function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) {
+	var i = dimension === "width" ? 1 : 0,
+		extra = 0,
+		delta = 0;
+
+	// Adjustment may not be necessary
+	if ( box === ( isBorderBox ? "border" : "content" ) ) {
+		return 0;
+	}
+
+	for ( ; i < 4; i += 2 ) {
+
+		// Both box models exclude margin
+		if ( box === "margin" ) {
+			delta += jQuery.css( elem, box + cssExpand[ i ], true, styles );
+		}
+
+		// If we get here with a content-box, we're seeking "padding" or "border" or "margin"
+		if ( !isBorderBox ) {
+
+			// Add padding
+			delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
+
+			// For "border" or "margin", add border
+			if ( box !== "padding" ) {
+				delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
+
+			// But still keep track of it otherwise
+			} else {
+				extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
+			}
+
+		// If we get here with a border-box (content + padding + border), we're seeking "content" or
+		// "padding" or "margin"
+		} else {
+
+			// For "content", subtract padding
+			if ( box === "content" ) {
+				delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
+			}
+
+			// For "content" or "padding", subtract border
+			if ( box !== "margin" ) {
+				delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
+			}
+		}
+	}
+
+	// Account for positive content-box scroll gutter when requested by providing computedVal
+	if ( !isBorderBox && computedVal >= 0 ) {
+
+		// offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border
+		// Assuming integer scroll gutter, subtract the rest and round down
+		delta += Math.max( 0, Math.ceil(
+			elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
+			computedVal -
+			delta -
+			extra -
+			0.5
+
+		// If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter
+		// Use an explicit zero to avoid NaN (gh-3964)
+		) ) || 0;
+	}
+
+	return delta;
+}
+
+function getWidthOrHeight( elem, dimension, extra ) {
+
+	// Start with computed style
+	var styles = getStyles( elem ),
+
+		// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322).
+		// Fake content-box until we know it's needed to know the true value.
+		boxSizingNeeded = !support.boxSizingReliable() || extra,
+		isBorderBox = boxSizingNeeded &&
+			jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
+		valueIsBorderBox = isBorderBox,
+
+		val = curCSS( elem, dimension, styles ),
+		offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 );
+
+	// Support: Firefox <=54
+	// Return a confounding non-pixel value or feign ignorance, as appropriate.
+	if ( rnumnonpx.test( val ) ) {
+		if ( !extra ) {
+			return val;
+		}
+		val = "auto";
+	}
+
+
+	// Fall back to offsetWidth/offsetHeight when value is "auto"
+	// This happens for inline elements with no explicit setting (gh-3571)
+	// Support: Android <=4.1 - 4.3 only
+	// Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602)
+	// Support: IE 9-11 only
+	// Also use offsetWidth/offsetHeight for when box sizing is unreliable
+	// We use getClientRects() to check for hidden/disconnected.
+	// In those cases, the computed value can be trusted to be border-box
+	if ( ( !support.boxSizingReliable() && isBorderBox ||
+		val === "auto" ||
+		!parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) &&
+		elem.getClientRects().length ) {
+
+		isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box";
+
+		// Where available, offsetWidth/offsetHeight approximate border box dimensions.
+		// Where not available (e.g., SVG), assume unreliable box-sizing and interpret the
+		// retrieved value as a content box dimension.
+		valueIsBorderBox = offsetProp in elem;
+		if ( valueIsBorderBox ) {
+			val = elem[ offsetProp ];
+		}
+	}
+
+	// Normalize "" and auto
+	val = parseFloat( val ) || 0;
+
+	// Adjust for the element's box model
+	return ( val +
+		boxModelAdjustment(
+			elem,
+			dimension,
+			extra || ( isBorderBox ? "border" : "content" ),
+			valueIsBorderBox,
+			styles,
+
+			// Provide the current computed size to request scroll gutter calculation (gh-3589)
+			val
+		)
+	) + "px";
+}
+
+jQuery.extend( {
+
+	// Add in style property hooks for overriding the default
+	// behavior of getting and setting a style property
+	cssHooks: {
+		opacity: {
+			get: function( elem, computed ) {
+				if ( computed ) {
+
+					// We should always get a number back from opacity
+					var ret = curCSS( elem, "opacity" );
+					return ret === "" ? "1" : ret;
+				}
+			}
+		}
+	},
+
+	// Don't automatically add "px" to these possibly-unitless properties
+	cssNumber: {
+		"animationIterationCount": true,
+		"columnCount": true,
+		"fillOpacity": true,
+		"flexGrow": true,
+		"flexShrink": true,
+		"fontWeight": true,
+		"gridArea": true,
+		"gridColumn": true,
+		"gridColumnEnd": true,
+		"gridColumnStart": true,
+		"gridRow": true,
+		"gridRowEnd": true,
+		"gridRowStart": true,
+		"lineHeight": true,
+		"opacity": true,
+		"order": true,
+		"orphans": true,
+		"widows": true,
+		"zIndex": true,
+		"zoom": true
+	},
+
+	// Add in properties whose names you wish to fix before
+	// setting or getting the value
+	cssProps: {},
+
+	// Get and set the style property on a DOM Node
+	style: function( elem, name, value, extra ) {
+
+		// Don't set styles on text and comment nodes
+		if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) {
+			return;
+		}
+
+		// Make sure that we're working with the right name
+		var ret, type, hooks,
+			origName = camelCase( name ),
+			isCustomProp = rcustomProp.test( name ),
+			style = elem.style;
+
+		// Make sure that we're working with the right name. We don't
+		// want to query the value if it is a CSS custom property
+		// since they are user-defined.
+		if ( !isCustomProp ) {
+			name = finalPropName( origName );
+		}
+
+		// Gets hook for the prefixed version, then unprefixed version
+		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
+
+		// Check if we're setting a value
+		if ( value !== undefined ) {
+			type = typeof value;
+
+			// Convert "+=" or "-=" to relative numbers (#7345)
+			if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) {
+				value = adjustCSS( elem, name, ret );
+
+				// Fixes bug #9237
+				type = "number";
+			}
+
+			// Make sure that null and NaN values aren't set (#7116)
+			if ( value == null || value !== value ) {
+				return;
+			}
+
+			// If a number was passed in, add the unit (except for certain CSS properties)
+			// The isCustomProp check can be removed in jQuery 4.0 when we only auto-append
+			// "px" to a few hardcoded values.
+			if ( type === "number" && !isCustomProp ) {
+				value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" );
+			}
+
+			// background-* props affect original clone's values
+			if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) {
+				style[ name ] = "inherit";
+			}
+
+			// If a hook was provided, use that value, otherwise just set the specified value
+			if ( !hooks || !( "set" in hooks ) ||
+				( value = hooks.set( elem, value, extra ) ) !== undefined ) {
+
+				if ( isCustomProp ) {
+					style.setProperty( name, value );
+				} else {
+					style[ name ] = value;
+				}
+			}
+
+		} else {
+
+			// If a hook was provided get the non-computed value from there
+			if ( hooks && "get" in hooks &&
+				( ret = hooks.get( elem, false, extra ) ) !== undefined ) {
+
+				return ret;
+			}
+
+			// Otherwise just get the value from the style object
+			return style[ name ];
+		}
+	},
+
+	css: function( elem, name, extra, styles ) {
+		var val, num, hooks,
+			origName = camelCase( name ),
+			isCustomProp = rcustomProp.test( name );
+
+		// Make sure that we're working with the right name. We don't
+		// want to modify the value if it is a CSS custom property
+		// since they are user-defined.
+		if ( !isCustomProp ) {
+			name = finalPropName( origName );
+		}
+
+		// Try prefixed name followed by the unprefixed name
+		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
+
+		// If a hook was provided get the computed value from there
+		if ( hooks && "get" in hooks ) {
+			val = hooks.get( elem, true, extra );
+		}
+
+		// Otherwise, if a way to get the computed value exists, use that
+		if ( val === undefined ) {
+			val = curCSS( elem, name, styles );
+		}
+
+		// Convert "normal" to computed value
+		if ( val === "normal" && name in cssNormalTransform ) {
+			val = cssNormalTransform[ name ];
+		}
+
+		// Make numeric if forced or a qualifier was provided and val looks numeric
+		if ( extra === "" || extra ) {
+			num = parseFloat( val );
+			return extra === true || isFinite( num ) ? num || 0 : val;
+		}
+
+		return val;
+	}
+} );
+
+jQuery.each( [ "height", "width" ], function( i, dimension ) {
+	jQuery.cssHooks[ dimension ] = {
+		get: function( elem, computed, extra ) {
+			if ( computed ) {
+
+				// Certain elements can have dimension info if we invisibly show them
+				// but it must have a current display style that would benefit
+				return rdisplayswap.test( jQuery.css( elem, "display" ) ) &&
+
+					// Support: Safari 8+
+					// Table columns in Safari have non-zero offsetWidth & zero
+					// getBoundingClientRect().width unless display is changed.
+					// Support: IE <=11 only
+					// Running getBoundingClientRect on a disconnected node
+					// in IE throws an error.
+					( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ?
+						swap( elem, cssShow, function() {
+							return getWidthOrHeight( elem, dimension, extra );
+						} ) :
+						getWidthOrHeight( elem, dimension, extra );
+			}
+		},
+
+		set: function( elem, value, extra ) {
+			var matches,
+				styles = getStyles( elem ),
+
+				// Only read styles.position if the test has a chance to fail
+				// to avoid forcing a reflow.
+				scrollboxSizeBuggy = !support.scrollboxSize() &&
+					styles.position === "absolute",
+
+				// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991)
+				boxSizingNeeded = scrollboxSizeBuggy || extra,
+				isBorderBox = boxSizingNeeded &&
+					jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
+				subtract = extra ?
+					boxModelAdjustment(
+						elem,
+						dimension,
+						extra,
+						isBorderBox,
+						styles
+					) :
+					0;
+
+			// Account for unreliable border-box dimensions by comparing offset* to computed and
+			// faking a content-box to get border and padding (gh-3699)
+			if ( isBorderBox && scrollboxSizeBuggy ) {
+				subtract -= Math.ceil(
+					elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
+					parseFloat( styles[ dimension ] ) -
+					boxModelAdjustment( elem, dimension, "border", false, styles ) -
+					0.5
+				);
+			}
+
+			// Convert to pixels if value adjustment is needed
+			if ( subtract && ( matches = rcssNum.exec( value ) ) &&
+				( matches[ 3 ] || "px" ) !== "px" ) {
+
+				elem.style[ dimension ] = value;
+				value = jQuery.css( elem, dimension );
+			}
+
+			return setPositiveNumber( elem, value, subtract );
+		}
+	};
+} );
+
+jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft,
+	function( elem, computed ) {
+		if ( computed ) {
+			return ( parseFloat( curCSS( elem, "marginLeft" ) ) ||
+				elem.getBoundingClientRect().left -
+					swap( elem, { marginLeft: 0 }, function() {
+						return elem.getBoundingClientRect().left;
+					} )
+				) + "px";
+		}
+	}
+);
+
+// These hooks are used by animate to expand properties
+jQuery.each( {
+	margin: "",
+	padding: "",
+	border: "Width"
+}, function( prefix, suffix ) {
+	jQuery.cssHooks[ prefix + suffix ] = {
+		expand: function( value ) {
+			var i = 0,
+				expanded = {},
+
+				// Assumes a single number if not a string
+				parts = typeof value === "string" ? value.split( " " ) : [ value ];
+
+			for ( ; i < 4; i++ ) {
+				expanded[ prefix + cssExpand[ i ] + suffix ] =
+					parts[ i ] || parts[ i - 2 ] || parts[ 0 ];
+			}
+
+			return expanded;
+		}
+	};
+
+	if ( prefix !== "margin" ) {
+		jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber;
+	}
+} );
+
+jQuery.fn.extend( {
+	css: function( name, value ) {
+		return access( this, function( elem, name, value ) {
+			var styles, len,
+				map = {},
+				i = 0;
+
+			if ( Array.isArray( name ) ) {
+				styles = getStyles( elem );
+				len = name.length;
+
+				for ( ; i < len; i++ ) {
+					map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles );
+				}
+
+				return map;
+			}
+
+			return value !== undefined ?
+				jQuery.style( elem, name, value ) :
+				jQuery.css( elem, name );
+		}, name, value, arguments.length > 1 );
+	}
+} );
+
+
+function Tween( elem, options, prop, end, easing ) {
+	return new Tween.prototype.init( elem, options, prop, end, easing );
+}
+jQuery.Tween = Tween;
+
+Tween.prototype = {
+	constructor: Tween,
+	init: function( elem, options, prop, end, easing, unit ) {
+		this.elem = elem;
+		this.prop = prop;
+		this.easing = easing || jQuery.easing._default;
+		this.options = options;
+		this.start = this.now = this.cur();
+		this.end = end;
+		this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" );
+	},
+	cur: function() {
+		var hooks = Tween.propHooks[ this.prop ];
+
+		return hooks && hooks.get ?
+			hooks.get( this ) :
+			Tween.propHooks._default.get( this );
+	},
+	run: function( percent ) {
+		var eased,
+			hooks = Tween.propHooks[ this.prop ];
+
+		if ( this.options.duration ) {
+			this.pos = eased = jQuery.easing[ this.easing ](
+				percent, this.options.duration * percent, 0, 1, this.options.duration
+			);
+		} else {
+			this.pos = eased = percent;
+		}
+		this.now = ( this.end - this.start ) * eased + this.start;
+
+		if ( this.options.step ) {
+			this.options.step.call( this.elem, this.now, this );
+		}
+
+		if ( hooks && hooks.set ) {
+			hooks.set( this );
+		} else {
+			Tween.propHooks._default.set( this );
+		}
+		return this;
+	}
+};
+
+Tween.prototype.init.prototype = Tween.prototype;
+
+Tween.propHooks = {
+	_default: {
+		get: function( tween ) {
+			var result;
+
+			// Use a property on the element directly when it is not a DOM element,
+			// or when there is no matching style property that exists.
+			if ( tween.elem.nodeType !== 1 ||
+				tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) {
+				return tween.elem[ tween.prop ];
+			}
+
+			// Passing an empty string as a 3rd parameter to .css will automatically
+			// attempt a parseFloat and fallback to a string if the parse fails.
+			// Simple values such as "10px" are parsed to Float;
+			// complex values such as "rotate(1rad)" are returned as-is.
+			result = jQuery.css( tween.elem, tween.prop, "" );
+
+			// Empty strings, null, undefined and "auto" are converted to 0.
+			return !result || result === "auto" ? 0 : result;
+		},
+		set: function( tween ) {
+
+			// Use step hook for back compat.
+			// Use cssHook if its there.
+			// Use .style if available and use plain properties where available.
+			if ( jQuery.fx.step[ tween.prop ] ) {
+				jQuery.fx.step[ tween.prop ]( tween );
+			} else if ( tween.elem.nodeType === 1 && (
+					jQuery.cssHooks[ tween.prop ] ||
+					tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) {
+				jQuery.style( tween.elem, tween.prop, tween.now + tween.unit );
+			} else {
+				tween.elem[ tween.prop ] = tween.now;
+			}
+		}
+	}
+};
+
+// Support: IE <=9 only
+// Panic based approach to setting things on disconnected nodes
+Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = {
+	set: function( tween ) {
+		if ( tween.elem.nodeType && tween.elem.parentNode ) {
+			tween.elem[ tween.prop ] = tween.now;
+		}
+	}
+};
+
+jQuery.easing = {
+	linear: function( p ) {
+		return p;
+	},
+	swing: function( p ) {
+		return 0.5 - Math.cos( p * Math.PI ) / 2;
+	},
+	_default: "swing"
+};
+
+jQuery.fx = Tween.prototype.init;
+
+// Back compat <1.8 extension point
+jQuery.fx.step = {};
+
+
+
+
+var
+	fxNow, inProgress,
+	rfxtypes = /^(?:toggle|show|hide)$/,
+	rrun = /queueHooks$/;
+
+function schedule() {
+	if ( inProgress ) {
+		if ( document.hidden === false && window.requestAnimationFrame ) {
+			window.requestAnimationFrame( schedule );
+		} else {
+			window.setTimeout( schedule, jQuery.fx.interval );
+		}
+
+		jQuery.fx.tick();
+	}
+}
+
+// Animations created synchronously will run synchronously
+function createFxNow() {
+	window.setTimeout( function() {
+		fxNow = undefined;
+	} );
+	return ( fxNow = Date.now() );
+}
+
+// Generate parameters to create a standard animation
+function genFx( type, includeWidth ) {
+	var which,
+		i = 0,
+		attrs = { height: type };
+
+	// If we include width, step value is 1 to do all cssExpand values,
+	// otherwise step value is 2 to skip over Left and Right
+	includeWidth = includeWidth ? 1 : 0;
+	for ( ; i < 4; i += 2 - includeWidth ) {
+		which = cssExpand[ i ];
+		attrs[ "margin" + which ] = attrs[ "padding" + which ] = type;
+	}
+
+	if ( includeWidth ) {
+		attrs.opacity = attrs.width = type;
+	}
+
+	return attrs;
+}
+
+function createTween( value, prop, animation ) {
+	var tween,
+		collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ),
+		index = 0,
+		length = collection.length;
+	for ( ; index < length; index++ ) {
+		if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) {
+
+			// We're done with this property
+			return tween;
+		}
+	}
+}
+
+function defaultPrefilter( elem, props, opts ) {
+	var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display,
+		isBox = "width" in props || "height" in props,
+		anim = this,
+		orig = {},
+		style = elem.style,
+		hidden = elem.nodeType && isHiddenWithinTree( elem ),
+		dataShow = dataPriv.get( elem, "fxshow" );
+
+	// Queue-skipping animations hijack the fx hooks
+	if ( !opts.queue ) {
+		hooks = jQuery._queueHooks( elem, "fx" );
+		if ( hooks.unqueued == null ) {
+			hooks.unqueued = 0;
+			oldfire = hooks.empty.fire;
+			hooks.empty.fire = function() {
+				if ( !hooks.unqueued ) {
+					oldfire();
+				}
+			};
+		}
+		hooks.unqueued++;
+
+		anim.always( function() {
+
+			// Ensure the complete handler is called before this completes
+			anim.always( function() {
+				hooks.unqueued--;
+				if ( !jQuery.queue( elem, "fx" ).length ) {
+					hooks.empty.fire();
+				}
+			} );
+		} );
+	}
+
+	// Detect show/hide animations
+	for ( prop in props ) {
+		value = props[ prop ];
+		if ( rfxtypes.test( value ) ) {
+			delete props[ prop ];
+			toggle = toggle || value === "toggle";
+			if ( value === ( hidden ? "hide" : "show" ) ) {
+
+				// Pretend to be hidden if this is a "show" and
+				// there is still data from a stopped show/hide
+				if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) {
+					hidden = true;
+
+				// Ignore all other no-op show/hide data
+				} else {
+					continue;
+				}
+			}
+			orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop );
+		}
+	}
+
+	// Bail out if this is a no-op like .hide().hide()
+	propTween = !jQuery.isEmptyObject( props );
+	if ( !propTween && jQuery.isEmptyObject( orig ) ) {
+		return;
+	}
+
+	// Restrict "overflow" and "display" styles during box animations
+	if ( isBox && elem.nodeType === 1 ) {
+
+		// Support: IE <=9 - 11, Edge 12 - 15
+		// Record all 3 overflow attributes because IE does not infer the shorthand
+		// from identically-valued overflowX and overflowY and Edge just mirrors
+		// the overflowX value there.
+		opts.overflow = [ style.overflow, style.overflowX, style.overflowY ];
+
+		// Identify a display type, preferring old show/hide data over the CSS cascade
+		restoreDisplay = dataShow && dataShow.display;
+		if ( restoreDisplay == null ) {
+			restoreDisplay = dataPriv.get( elem, "display" );
+		}
+		display = jQuery.css( elem, "display" );
+		if ( display === "none" ) {
+			if ( restoreDisplay ) {
+				display = restoreDisplay;
+			} else {
+
+				// Get nonempty value(s) by temporarily forcing visibility
+				showHide( [ elem ], true );
+				restoreDisplay = elem.style.display || restoreDisplay;
+				display = jQuery.css( elem, "display" );
+				showHide( [ elem ] );
+			}
+		}
+
+		// Animate inline elements as inline-block
+		if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) {
+			if ( jQuery.css( elem, "float" ) === "none" ) {
+
+				// Restore the original display value at the end of pure show/hide animations
+				if ( !propTween ) {
+					anim.done( function() {
+						style.display = restoreDisplay;
+					} );
+					if ( restoreDisplay == null ) {
+						display = style.display;
+						restoreDisplay = display === "none" ? "" : display;
+					}
+				}
+				style.display = "inline-block";
+			}
+		}
+	}
+
+	if ( opts.overflow ) {
+		style.overflow = "hidden";
+		anim.always( function() {
+			style.overflow = opts.overflow[ 0 ];
+			style.overflowX = opts.overflow[ 1 ];
+			style.overflowY = opts.overflow[ 2 ];
+		} );
+	}
+
+	// Implement show/hide animations
+	propTween = false;
+	for ( prop in orig ) {
+
+		// General show/hide setup for this element animation
+		if ( !propTween ) {
+			if ( dataShow ) {
+				if ( "hidden" in dataShow ) {
+					hidden = dataShow.hidden;
+				}
+			} else {
+				dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } );
+			}
+
+			// Store hidden/visible for toggle so `.stop().toggle()` "reverses"
+			if ( toggle ) {
+				dataShow.hidden = !hidden;
+			}
+
+			// Show elements before animating them
+			if ( hidden ) {
+				showHide( [ elem ], true );
+			}
+
+			/* eslint-disable no-loop-func */
+
+			anim.done( function() {
+
+			/* eslint-enable no-loop-func */
+
+				// The final step of a "hide" animation is actually hiding the element
+				if ( !hidden ) {
+					showHide( [ elem ] );
+				}
+				dataPriv.remove( elem, "fxshow" );
+				for ( prop in orig ) {
+					jQuery.style( elem, prop, orig[ prop ] );
+				}
+			} );
+		}
+
+		// Per-property setup
+		propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim );
+		if ( !( prop in dataShow ) ) {
+			dataShow[ prop ] = propTween.start;
+			if ( hidden ) {
+				propTween.end = propTween.start;
+				propTween.start = 0;
+			}
+		}
+	}
+}
+
+function propFilter( props, specialEasing ) {
+	var index, name, easing, value, hooks;
+
+	// camelCase, specialEasing and expand cssHook pass
+	for ( index in props ) {
+		name = camelCase( index );
+		easing = specialEasing[ name ];
+		value = props[ index ];
+		if ( Array.isArray( value ) ) {
+			easing = value[ 1 ];
+			value = props[ index ] = value[ 0 ];
+		}
+
+		if ( index !== name ) {
+			props[ name ] = value;
+			delete props[ index ];
+		}
+
+		hooks = jQuery.cssHooks[ name ];
+		if ( hooks && "expand" in hooks ) {
+			value = hooks.expand( value );
+			delete props[ name ];
+
+			// Not quite $.extend, this won't overwrite existing keys.
+			// Reusing 'index' because we have the correct "name"
+			for ( index in value ) {
+				if ( !( index in props ) ) {
+					props[ index ] = value[ index ];
+					specialEasing[ index ] = easing;
+				}
+			}
+		} else {
+			specialEasing[ name ] = easing;
+		}
+	}
+}
+
+function Animation( elem, properties, options ) {
+	var result,
+		stopped,
+		index = 0,
+		length = Animation.prefilters.length,
+		deferred = jQuery.Deferred().always( function() {
+
+			// Don't match elem in the :animated selector
+			delete tick.elem;
+		} ),
+		tick = function() {
+			if ( stopped ) {
+				return false;
+			}
+			var currentTime = fxNow || createFxNow(),
+				remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ),
+
+				// Support: Android 2.3 only
+				// Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497)
+				temp = remaining / animation.duration || 0,
+				percent = 1 - temp,
+				index = 0,
+				length = animation.tweens.length;
+
+			for ( ; index < length; index++ ) {
+				animation.tweens[ index ].run( percent );
+			}
+
+			deferred.notifyWith( elem, [ animation, percent, remaining ] );
+
+			// If there's more to do, yield
+			if ( percent < 1 && length ) {
+				return remaining;
+			}
+
+			// If this was an empty animation, synthesize a final progress notification
+			if ( !length ) {
+				deferred.notifyWith( elem, [ animation, 1, 0 ] );
+			}
+
+			// Resolve the animation and report its conclusion
+			deferred.resolveWith( elem, [ animation ] );
+			return false;
+		},
+		animation = deferred.promise( {
+			elem: elem,
+			props: jQuery.extend( {}, properties ),
+			opts: jQuery.extend( true, {
+				specialEasing: {},
+				easing: jQuery.easing._default
+			}, options ),
+			originalProperties: properties,
+			originalOptions: options,
+			startTime: fxNow || createFxNow(),
+			duration: options.duration,
+			tweens: [],
+			createTween: function( prop, end ) {
+				var tween = jQuery.Tween( elem, animation.opts, prop, end,
+						animation.opts.specialEasing[ prop ] || animation.opts.easing );
+				animation.tweens.push( tween );
+				return tween;
+			},
+			stop: function( gotoEnd ) {
+				var index = 0,
+
+					// If we are going to the end, we want to run all the tweens
+					// otherwise we skip this part
+					length = gotoEnd ? animation.tweens.length : 0;
+				if ( stopped ) {
+					return this;
+				}
+				stopped = true;
+				for ( ; index < length; index++ ) {
+					animation.tweens[ index ].run( 1 );
+				}
+
+				// Resolve when we played the last frame; otherwise, reject
+				if ( gotoEnd ) {
+					deferred.notifyWith( elem, [ animation, 1, 0 ] );
+					deferred.resolveWith( elem, [ animation, gotoEnd ] );
+				} else {
+					deferred.rejectWith( elem, [ animation, gotoEnd ] );
+				}
+				return this;
+			}
+		} ),
+		props = animation.props;
+
+	propFilter( props, animation.opts.specialEasing );
+
+	for ( ; index < length; index++ ) {
+		result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts );
+		if ( result ) {
+			if ( isFunction( result.stop ) ) {
+				jQuery._queueHooks( animation.elem, animation.opts.queue ).stop =
+					result.stop.bind( result );
+			}
+			return result;
+		}
+	}
+
+	jQuery.map( props, createTween, animation );
+
+	if ( isFunction( animation.opts.start ) ) {
+		animation.opts.start.call( elem, animation );
+	}
+
+	// Attach callbacks from options
+	animation
+		.progress( animation.opts.progress )
+		.done( animation.opts.done, animation.opts.complete )
+		.fail( animation.opts.fail )
+		.always( animation.opts.always );
+
+	jQuery.fx.timer(
+		jQuery.extend( tick, {
+			elem: elem,
+			anim: animation,
+			queue: animation.opts.queue
+		} )
+	);
+
+	return animation;
+}
+
+jQuery.Animation = jQuery.extend( Animation, {
+
+	tweeners: {
+		"*": [ function( prop, value ) {
+			var tween = this.createTween( prop, value );
+			adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween );
+			return tween;
+		} ]
+	},
+
+	tweener: function( props, callback ) {
+		if ( isFunction( props ) ) {
+			callback = props;
+			props = [ "*" ];
+		} else {
+			props = props.match( rnothtmlwhite );
+		}
+
+		var prop,
+			index = 0,
+			length = props.length;
+
+		for ( ; index < length; index++ ) {
+			prop = props[ index ];
+			Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || [];
+			Animation.tweeners[ prop ].unshift( callback );
+		}
+	},
+
+	prefilters: [ defaultPrefilter ],
+
+	prefilter: function( callback, prepend ) {
+		if ( prepend ) {
+			Animation.prefilters.unshift( callback );
+		} else {
+			Animation.prefilters.push( callback );
+		}
+	}
+} );
+
+jQuery.speed = function( speed, easing, fn ) {
+	var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : {
+		complete: fn || !fn && easing ||
+			isFunction( speed ) && speed,
+		duration: speed,
+		easing: fn && easing || easing && !isFunction( easing ) && easing
+	};
+
+	// Go to the end state if fx are off
+	if ( jQuery.fx.off ) {
+		opt.duration = 0;
+
+	} else {
+		if ( typeof opt.duration !== "number" ) {
+			if ( opt.duration in jQuery.fx.speeds ) {
+				opt.duration = jQuery.fx.speeds[ opt.duration ];
+
+			} else {
+				opt.duration = jQuery.fx.speeds._default;
+			}
+		}
+	}
+
+	// Normalize opt.queue - true/undefined/null -> "fx"
+	if ( opt.queue == null || opt.queue === true ) {
+		opt.queue = "fx";
+	}
+
+	// Queueing
+	opt.old = opt.complete;
+
+	opt.complete = function() {
+		if ( isFunction( opt.old ) ) {
+			opt.old.call( this );
+		}
+
+		if ( opt.queue ) {
+			jQuery.dequeue( this, opt.queue );
+		}
+	};
+
+	return opt;
+};
+
+jQuery.fn.extend( {
+	fadeTo: function( speed, to, easing, callback ) {
+
+		// Show any hidden elements after setting opacity to 0
+		return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show()
+
+			// Animate to the value specified
+			.end().animate( { opacity: to }, speed, easing, callback );
+	},
+	animate: function( prop, speed, easing, callback ) {
+		var empty = jQuery.isEmptyObject( prop ),
+			optall = jQuery.speed( speed, easing, callback ),
+			doAnimation = function() {
+
+				// Operate on a copy of prop so per-property easing won't be lost
+				var anim = Animation( this, jQuery.extend( {}, prop ), optall );
+
+				// Empty animations, or finishing resolves immediately
+				if ( empty || dataPriv.get( this, "finish" ) ) {
+					anim.stop( true );
+				}
+			};
+			doAnimation.finish = doAnimation;
+
+		return empty || optall.queue === false ?
+			this.each( doAnimation ) :
+			this.queue( optall.queue, doAnimation );
+	},
+	stop: function( type, clearQueue, gotoEnd ) {
+		var stopQueue = function( hooks ) {
+			var stop = hooks.stop;
+			delete hooks.stop;
+			stop( gotoEnd );
+		};
+
+		if ( typeof type !== "string" ) {
+			gotoEnd = clearQueue;
+			clearQueue = type;
+			type = undefined;
+		}
+		if ( clearQueue && type !== false ) {
+			this.queue( type || "fx", [] );
+		}
+
+		return this.each( function() {
+			var dequeue = true,
+				index = type != null && type + "queueHooks",
+				timers = jQuery.timers,
+				data = dataPriv.get( this );
+
+			if ( index ) {
+				if ( data[ index ] && data[ index ].stop ) {
+					stopQueue( data[ index ] );
+				}
+			} else {
+				for ( index in data ) {
+					if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) {
+						stopQueue( data[ index ] );
+					}
+				}
+			}
+
+			for ( index = timers.length; index--; ) {
+				if ( timers[ index ].elem === this &&
+					( type == null || timers[ index ].queue === type ) ) {
+
+					timers[ index ].anim.stop( gotoEnd );
+					dequeue = false;
+					timers.splice( index, 1 );
+				}
+			}
+
+			// Start the next in the queue if the last step wasn't forced.
+			// Timers currently will call their complete callbacks, which
+			// will dequeue but only if they were gotoEnd.
+			if ( dequeue || !gotoEnd ) {
+				jQuery.dequeue( this, type );
+			}
+		} );
+	},
+	finish: function( type ) {
+		if ( type !== false ) {
+			type = type || "fx";
+		}
+		return this.each( function() {
+			var index,
+				data = dataPriv.get( this ),
+				queue = data[ type + "queue" ],
+				hooks = data[ type + "queueHooks" ],
+				timers = jQuery.timers,
+				length = queue ? queue.length : 0;
+
+			// Enable finishing flag on private data
+			data.finish = true;
+
+			// Empty the queue first
+			jQuery.queue( this, type, [] );
+
+			if ( hooks && hooks.stop ) {
+				hooks.stop.call( this, true );
+			}
+
+			// Look for any active animations, and finish them
+			for ( index = timers.length; index--; ) {
+				if ( timers[ index ].elem === this && timers[ index ].queue === type ) {
+					timers[ index ].anim.stop( true );
+					timers.splice( index, 1 );
+				}
+			}
+
+			// Look for any animations in the old queue and finish them
+			for ( index = 0; index < length; index++ ) {
+				if ( queue[ index ] && queue[ index ].finish ) {
+					queue[ index ].finish.call( this );
+				}
+			}
+
+			// Turn off finishing flag
+			delete data.finish;
+		} );
+	}
+} );
+
+jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) {
+	var cssFn = jQuery.fn[ name ];
+	jQuery.fn[ name ] = function( speed, easing, callback ) {
+		return speed == null || typeof speed === "boolean" ?
+			cssFn.apply( this, arguments ) :
+			this.animate( genFx( name, true ), speed, easing, callback );
+	};
+} );
+
+// Generate shortcuts for custom animations
+jQuery.each( {
+	slideDown: genFx( "show" ),
+	slideUp: genFx( "hide" ),
+	slideToggle: genFx( "toggle" ),
+	fadeIn: { opacity: "show" },
+	fadeOut: { opacity: "hide" },
+	fadeToggle: { opacity: "toggle" }
+}, function( name, props ) {
+	jQuery.fn[ name ] = function( speed, easing, callback ) {
+		return this.animate( props, speed, easing, callback );
+	};
+} );
+
+jQuery.timers = [];
+jQuery.fx.tick = function() {
+	var timer,
+		i = 0,
+		timers = jQuery.timers;
+
+	fxNow = Date.now();
+
+	for ( ; i < timers.length; i++ ) {
+		timer = timers[ i ];
+
+		// Run the timer and safely remove it when done (allowing for external removal)
+		if ( !timer() && timers[ i ] === timer ) {
+			timers.splice( i--, 1 );
+		}
+	}
+
+	if ( !timers.length ) {
+		jQuery.fx.stop();
+	}
+	fxNow = undefined;
+};
+
+jQuery.fx.timer = function( timer ) {
+	jQuery.timers.push( timer );
+	jQuery.fx.start();
+};
+
+jQuery.fx.interval = 13;
+jQuery.fx.start = function() {
+	if ( inProgress ) {
+		return;
+	}
+
+	inProgress = true;
+	schedule();
+};
+
+jQuery.fx.stop = function() {
+	inProgress = null;
+};
+
+jQuery.fx.speeds = {
+	slow: 600,
+	fast: 200,
+
+	// Default speed
+	_default: 400
+};
+
+
+// Based off of the plugin by Clint Helfers, with permission.
+// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/
+jQuery.fn.delay = function( time, type ) {
+	time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time;
+	type = type || "fx";
+
+	return this.queue( type, function( next, hooks ) {
+		var timeout = window.setTimeout( next, time );
+		hooks.stop = function() {
+			window.clearTimeout( timeout );
+		};
+	} );
+};
+
+
+( function() {
+	var input = document.createElement( "input" ),
+		select = document.createElement( "select" ),
+		opt = select.appendChild( document.createElement( "option" ) );
+
+	input.type = "checkbox";
+
+	// Support: Android <=4.3 only
+	// Default value for a checkbox should be "on"
+	support.checkOn = input.value !== "";
+
+	// Support: IE <=11 only
+	// Must access selectedIndex to make default options select
+	support.optSelected = opt.selected;
+
+	// Support: IE <=11 only
+	// An input loses its value after becoming a radio
+	input = document.createElement( "input" );
+	input.value = "t";
+	input.type = "radio";
+	support.radioValue = input.value === "t";
+} )();
+
+
+var boolHook,
+	attrHandle = jQuery.expr.attrHandle;
+
+jQuery.fn.extend( {
+	attr: function( name, value ) {
+		return access( this, jQuery.attr, name, value, arguments.length > 1 );
+	},
+
+	removeAttr: function( name ) {
+		return this.each( function() {
+			jQuery.removeAttr( this, name );
+		} );
+	}
+} );
+
+jQuery.extend( {
+	attr: function( elem, name, value ) {
+		var ret, hooks,
+			nType = elem.nodeType;
+
+		// Don't get/set attributes on text, comment and attribute nodes
+		if ( nType === 3 || nType === 8 || nType === 2 ) {
+			return;
+		}
+
+		// Fallback to prop when attributes are not supported
+		if ( typeof elem.getAttribute === "undefined" ) {
+			return jQuery.prop( elem, name, value );
+		}
+
+		// Attribute hooks are determined by the lowercase version
+		// Grab necessary hook if one is defined
+		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
+			hooks = jQuery.attrHooks[ name.toLowerCase() ] ||
+				( jQuery.expr.match.bool.test( name ) ? boolHook : undefined );
+		}
+
+		if ( value !== undefined ) {
+			if ( value === null ) {
+				jQuery.removeAttr( elem, name );
+				return;
+			}
+
+			if ( hooks && "set" in hooks &&
+				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
+				return ret;
+			}
+
+			elem.setAttribute( name, value + "" );
+			return value;
+		}
+
+		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
+			return ret;
+		}
+
+		ret = jQuery.find.attr( elem, name );
+
+		// Non-existent attributes return null, we normalize to undefined
+		return ret == null ? undefined : ret;
+	},
+
+	attrHooks: {
+		type: {
+			set: function( elem, value ) {
+				if ( !support.radioValue && value === "radio" &&
+					nodeName( elem, "input" ) ) {
+					var val = elem.value;
+					elem.setAttribute( "type", value );
+					if ( val ) {
+						elem.value = val;
+					}
+					return value;
+				}
+			}
+		}
+	},
+
+	removeAttr: function( elem, value ) {
+		var name,
+			i = 0,
+
+			// Attribute names can contain non-HTML whitespace characters
+			// https://html.spec.whatwg.org/multipage/syntax.html#attributes-2
+			attrNames = value && value.match( rnothtmlwhite );
+
+		if ( attrNames && elem.nodeType === 1 ) {
+			while ( ( name = attrNames[ i++ ] ) ) {
+				elem.removeAttribute( name );
+			}
+		}
+	}
+} );
+
+// Hooks for boolean attributes
+boolHook = {
+	set: function( elem, value, name ) {
+		if ( value === false ) {
+
+			// Remove boolean attributes when set to false
+			jQuery.removeAttr( elem, name );
+		} else {
+			elem.setAttribute( name, name );
+		}
+		return name;
+	}
+};
+
+jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) {
+	var getter = attrHandle[ name ] || jQuery.find.attr;
+
+	attrHandle[ name ] = function( elem, name, isXML ) {
+		var ret, handle,
+			lowercaseName = name.toLowerCase();
+
+		if ( !isXML ) {
+
+			// Avoid an infinite loop by temporarily removing this function from the getter
+			handle = attrHandle[ lowercaseName ];
+			attrHandle[ lowercaseName ] = ret;
+			ret = getter( elem, name, isXML ) != null ?
+				lowercaseName :
+				null;
+			attrHandle[ lowercaseName ] = handle;
+		}
+		return ret;
+	};
+} );
+
+
+
+
+var rfocusable = /^(?:input|select|textarea|button)$/i,
+	rclickable = /^(?:a|area)$/i;
+
+jQuery.fn.extend( {
+	prop: function( name, value ) {
+		return access( this, jQuery.prop, name, value, arguments.length > 1 );
+	},
+
+	removeProp: function( name ) {
+		return this.each( function() {
+			delete this[ jQuery.propFix[ name ] || name ];
+		} );
+	}
+} );
+
+jQuery.extend( {
+	prop: function( elem, name, value ) {
+		var ret, hooks,
+			nType = elem.nodeType;
+
+		// Don't get/set properties on text, comment and attribute nodes
+		if ( nType === 3 || nType === 8 || nType === 2 ) {
+			return;
+		}
+
+		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
+
+			// Fix name and attach hooks
+			name = jQuery.propFix[ name ] || name;
+			hooks = jQuery.propHooks[ name ];
+		}
+
+		if ( value !== undefined ) {
+			if ( hooks && "set" in hooks &&
+				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
+				return ret;
+			}
+
+			return ( elem[ name ] = value );
+		}
+
+		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
+			return ret;
+		}
+
+		return elem[ name ];
+	},
+
+	propHooks: {
+		tabIndex: {
+			get: function( elem ) {
+
+				// Support: IE <=9 - 11 only
+				// elem.tabIndex doesn't always return the
+				// correct value when it hasn't been explicitly set
+				// https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/
+				// Use proper attribute retrieval(#12072)
+				var tabindex = jQuery.find.attr( elem, "tabindex" );
+
+				if ( tabindex ) {
+					return parseInt( tabindex, 10 );
+				}
+
+				if (
+					rfocusable.test( elem.nodeName ) ||
+					rclickable.test( elem.nodeName ) &&
+					elem.href
+				) {
+					return 0;
+				}
+
+				return -1;
+			}
+		}
+	},
+
+	propFix: {
+		"for": "htmlFor",
+		"class": "className"
+	}
+} );
+
+// Support: IE <=11 only
+// Accessing the selectedIndex property
+// forces the browser to respect setting selected
+// on the option
+// The getter ensures a default option is selected
+// when in an optgroup
+// eslint rule "no-unused-expressions" is disabled for this code
+// since it considers such accessions noop
+if ( !support.optSelected ) {
+	jQuery.propHooks.selected = {
+		get: function( elem ) {
+
+			/* eslint no-unused-expressions: "off" */
+
+			var parent = elem.parentNode;
+			if ( parent && parent.parentNode ) {
+				parent.parentNode.selectedIndex;
+			}
+			return null;
+		},
+		set: function( elem ) {
+
+			/* eslint no-unused-expressions: "off" */
+
+			var parent = elem.parentNode;
+			if ( parent ) {
+				parent.selectedIndex;
+
+				if ( parent.parentNode ) {
+					parent.parentNode.selectedIndex;
+				}
+			}
+		}
+	};
+}
+
+jQuery.each( [
+	"tabIndex",
+	"readOnly",
+	"maxLength",
+	"cellSpacing",
+	"cellPadding",
+	"rowSpan",
+	"colSpan",
+	"useMap",
+	"frameBorder",
+	"contentEditable"
+], function() {
+	jQuery.propFix[ this.toLowerCase() ] = this;
+} );
+
+
+
+
+	// Strip and collapse whitespace according to HTML spec
+	// https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace
+	function stripAndCollapse( value ) {
+		var tokens = value.match( rnothtmlwhite ) || [];
+		return tokens.join( " " );
+	}
+
+
+function getClass( elem ) {
+	return elem.getAttribute && elem.getAttribute( "class" ) || "";
+}
+
+function classesToArray( value ) {
+	if ( Array.isArray( value ) ) {
+		return value;
+	}
+	if ( typeof value === "string" ) {
+		return value.match( rnothtmlwhite ) || [];
+	}
+	return [];
+}
+
+jQuery.fn.extend( {
+	addClass: function( value ) {
+		var classes, elem, cur, curValue, clazz, j, finalValue,
+			i = 0;
+
+		if ( isFunction( value ) ) {
+			return this.each( function( j ) {
+				jQuery( this ).addClass( value.call( this, j, getClass( this ) ) );
+			} );
+		}
+
+		classes = classesToArray( value );
+
+		if ( classes.length ) {
+			while ( ( elem = this[ i++ ] ) ) {
+				curValue = getClass( elem );
+				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
+
+				if ( cur ) {
+					j = 0;
+					while ( ( clazz = classes[ j++ ] ) ) {
+						if ( cur.indexOf( " " + clazz + " " ) < 0 ) {
+							cur += clazz + " ";
+						}
+					}
+
+					// Only assign if different to avoid unneeded rendering.
+					finalValue = stripAndCollapse( cur );
+					if ( curValue !== finalValue ) {
+						elem.setAttribute( "class", finalValue );
+					}
+				}
+			}
+		}
+
+		return this;
+	},
+
+	removeClass: function( value ) {
+		var classes, elem, cur, curValue, clazz, j, finalValue,
+			i = 0;
+
+		if ( isFunction( value ) ) {
+			return this.each( function( j ) {
+				jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) );
+			} );
+		}
+
+		if ( !arguments.length ) {
+			return this.attr( "class", "" );
+		}
+
+		classes = classesToArray( value );
+
+		if ( classes.length ) {
+			while ( ( elem = this[ i++ ] ) ) {
+				curValue = getClass( elem );
+
+				// This expression is here for better compressibility (see addClass)
+				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
+
+				if ( cur ) {
+					j = 0;
+					while ( ( clazz = classes[ j++ ] ) ) {
+
+						// Remove *all* instances
+						while ( cur.indexOf( " " + clazz + " " ) > -1 ) {
+							cur = cur.replace( " " + clazz + " ", " " );
+						}
+					}
+
+					// Only assign if different to avoid unneeded rendering.
+					finalValue = stripAndCollapse( cur );
+					if ( curValue !== finalValue ) {
+						elem.setAttribute( "class", finalValue );
+					}
+				}
+			}
+		}
+
+		return this;
+	},
+
+	toggleClass: function( value, stateVal ) {
+		var type = typeof value,
+			isValidValue = type === "string" || Array.isArray( value );
+
+		if ( typeof stateVal === "boolean" && isValidValue ) {
+			return stateVal ? this.addClass( value ) : this.removeClass( value );
+		}
+
+		if ( isFunction( value ) ) {
+			return this.each( function( i ) {
+				jQuery( this ).toggleClass(
+					value.call( this, i, getClass( this ), stateVal ),
+					stateVal
+				);
+			} );
+		}
+
+		return this.each( function() {
+			var className, i, self, classNames;
+
+			if ( isValidValue ) {
+
+				// Toggle individual class names
+				i = 0;
+				self = jQuery( this );
+				classNames = classesToArray( value );
+
+				while ( ( className = classNames[ i++ ] ) ) {
+
+					// Check each className given, space separated list
+					if ( self.hasClass( className ) ) {
+						self.removeClass( className );
+					} else {
+						self.addClass( className );
+					}
+				}
+
+			// Toggle whole class name
+			} else if ( value === undefined || type === "boolean" ) {
+				className = getClass( this );
+				if ( className ) {
+
+					// Store className if set
+					dataPriv.set( this, "__className__", className );
+				}
+
+				// If the element has a class name or if we're passed `false`,
+				// then remove the whole classname (if there was one, the above saved it).
+				// Otherwise bring back whatever was previously saved (if anything),
+				// falling back to the empty string if nothing was stored.
+				if ( this.setAttribute ) {
+					this.setAttribute( "class",
+						className || value === false ?
+						"" :
+						dataPriv.get( this, "__className__" ) || ""
+					);
+				}
+			}
+		} );
+	},
+
+	hasClass: function( selector ) {
+		var className, elem,
+			i = 0;
+
+		className = " " + selector + " ";
+		while ( ( elem = this[ i++ ] ) ) {
+			if ( elem.nodeType === 1 &&
+				( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) {
+					return true;
+			}
+		}
+
+		return false;
+	}
+} );
+
+
+
+
+var rreturn = /\r/g;
+
+jQuery.fn.extend( {
+	val: function( value ) {
+		var hooks, ret, valueIsFunction,
+			elem = this[ 0 ];
+
+		if ( !arguments.length ) {
+			if ( elem ) {
+				hooks = jQuery.valHooks[ elem.type ] ||
+					jQuery.valHooks[ elem.nodeName.toLowerCase() ];
+
+				if ( hooks &&
+					"get" in hooks &&
+					( ret = hooks.get( elem, "value" ) ) !== undefined
+				) {
+					return ret;
+				}
+
+				ret = elem.value;
+
+				// Handle most common string cases
+				if ( typeof ret === "string" ) {
+					return ret.replace( rreturn, "" );
+				}
+
+				// Handle cases where value is null/undef or number
+				return ret == null ? "" : ret;
+			}
+
+			return;
+		}
+
+		valueIsFunction = isFunction( value );
+
+		return this.each( function( i ) {
+			var val;
+
+			if ( this.nodeType !== 1 ) {
+				return;
+			}
+
+			if ( valueIsFunction ) {
+				val = value.call( this, i, jQuery( this ).val() );
+			} else {
+				val = value;
+			}
+
+			// Treat null/undefined as ""; convert numbers to string
+			if ( val == null ) {
+				val = "";
+
+			} else if ( typeof val === "number" ) {
+				val += "";
+
+			} else if ( Array.isArray( val ) ) {
+				val = jQuery.map( val, function( value ) {
+					return value == null ? "" : value + "";
+				} );
+			}
+
+			hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ];
+
+			// If set returns undefined, fall back to normal setting
+			if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) {
+				this.value = val;
+			}
+		} );
+	}
+} );
+
+jQuery.extend( {
+	valHooks: {
+		option: {
+			get: function( elem ) {
+
+				var val = jQuery.find.attr( elem, "value" );
+				return val != null ?
+					val :
+
+					// Support: IE <=10 - 11 only
+					// option.text throws exceptions (#14686, #14858)
+					// Strip and collapse whitespace
+					// https://html.spec.whatwg.org/#strip-and-collapse-whitespace
+					stripAndCollapse( jQuery.text( elem ) );
+			}
+		},
+		select: {
+			get: function( elem ) {
+				var value, option, i,
+					options = elem.options,
+					index = elem.selectedIndex,
+					one = elem.type === "select-one",
+					values = one ? null : [],
+					max = one ? index + 1 : options.length;
+
+				if ( index < 0 ) {
+					i = max;
+
+				} else {
+					i = one ? index : 0;
+				}
+
+				// Loop through all the selected options
+				for ( ; i < max; i++ ) {
+					option = options[ i ];
+
+					// Support: IE <=9 only
+					// IE8-9 doesn't update selected after form reset (#2551)
+					if ( ( option.selected || i === index ) &&
+
+							// Don't return options that are disabled or in a disabled optgroup
+							!option.disabled &&
+							( !option.parentNode.disabled ||
+								!nodeName( option.parentNode, "optgroup" ) ) ) {
+
+						// Get the specific value for the option
+						value = jQuery( option ).val();
+
+						// We don't need an array for one selects
+						if ( one ) {
+							return value;
+						}
+
+						// Multi-Selects return an array
+						values.push( value );
+					}
+				}
+
+				return values;
+			},
+
+			set: function( elem, value ) {
+				var optionSet, option,
+					options = elem.options,
+					values = jQuery.makeArray( value ),
+					i = options.length;
+
+				while ( i-- ) {
+					option = options[ i ];
+
+					/* eslint-disable no-cond-assign */
+
+					if ( option.selected =
+						jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1
+					) {
+						optionSet = true;
+					}
+
+					/* eslint-enable no-cond-assign */
+				}
+
+				// Force browsers to behave consistently when non-matching value is set
+				if ( !optionSet ) {
+					elem.selectedIndex = -1;
+				}
+				return values;
+			}
+		}
+	}
+} );
+
+// Radios and checkboxes getter/setter
+jQuery.each( [ "radio", "checkbox" ], function() {
+	jQuery.valHooks[ this ] = {
+		set: function( elem, value ) {
+			if ( Array.isArray( value ) ) {
+				return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 );
+			}
+		}
+	};
+	if ( !support.checkOn ) {
+		jQuery.valHooks[ this ].get = function( elem ) {
+			return elem.getAttribute( "value" ) === null ? "on" : elem.value;
+		};
+	}
+} );
+
+
+
+
+// Return jQuery for attributes-only inclusion
+
+
+support.focusin = "onfocusin" in window;
+
+
+var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/,
+	stopPropagationCallback = function( e ) {
+		e.stopPropagation();
+	};
+
+jQuery.extend( jQuery.event, {
+
+	trigger: function( event, data, elem, onlyHandlers ) {
+
+		var i, cur, tmp, bubbleType, ontype, handle, special, lastElement,
+			eventPath = [ elem || document ],
+			type = hasOwn.call( event, "type" ) ? event.type : event,
+			namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : [];
+
+		cur = lastElement = tmp = elem = elem || document;
+
+		// Don't do events on text and comment nodes
+		if ( elem.nodeType === 3 || elem.nodeType === 8 ) {
+			return;
+		}
+
+		// focus/blur morphs to focusin/out; ensure we're not firing them right now
+		if ( rfocusMorph.test( type + jQuery.event.triggered ) ) {
+			return;
+		}
+
+		if ( type.indexOf( "." ) > -1 ) {
+
+			// Namespaced trigger; create a regexp to match event type in handle()
+			namespaces = type.split( "." );
+			type = namespaces.shift();
+			namespaces.sort();
+		}
+		ontype = type.indexOf( ":" ) < 0 && "on" + type;
+
+		// Caller can pass in a jQuery.Event object, Object, or just an event type string
+		event = event[ jQuery.expando ] ?
+			event :
+			new jQuery.Event( type, typeof event === "object" && event );
+
+		// Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true)
+		event.isTrigger = onlyHandlers ? 2 : 3;
+		event.namespace = namespaces.join( "." );
+		event.rnamespace = event.namespace ?
+			new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) :
+			null;
+
+		// Clean up the event in case it is being reused
+		event.result = undefined;
+		if ( !event.target ) {
+			event.target = elem;
+		}
+
+		// Clone any incoming data and prepend the event, creating the handler arg list
+		data = data == null ?
+			[ event ] :
+			jQuery.makeArray( data, [ event ] );
+
+		// Allow special events to draw outside the lines
+		special = jQuery.event.special[ type ] || {};
+		if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) {
+			return;
+		}
+
+		// Determine event propagation path in advance, per W3C events spec (#9951)
+		// Bubble up to document, then to window; watch for a global ownerDocument var (#9724)
+		if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) {
+
+			bubbleType = special.delegateType || type;
+			if ( !rfocusMorph.test( bubbleType + type ) ) {
+				cur = cur.parentNode;
+			}
+			for ( ; cur; cur = cur.parentNode ) {
+				eventPath.push( cur );
+				tmp = cur;
+			}
+
+			// Only add window if we got to document (e.g., not plain obj or detached DOM)
+			if ( tmp === ( elem.ownerDocument || document ) ) {
+				eventPath.push( tmp.defaultView || tmp.parentWindow || window );
+			}
+		}
+
+		// Fire handlers on the event path
+		i = 0;
+		while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) {
+			lastElement = cur;
+			event.type = i > 1 ?
+				bubbleType :
+				special.bindType || type;
+
+			// jQuery handler
+			handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] &&
+				dataPriv.get( cur, "handle" );
+			if ( handle ) {
+				handle.apply( cur, data );
+			}
+
+			// Native handler
+			handle = ontype && cur[ ontype ];
+			if ( handle && handle.apply && acceptData( cur ) ) {
+				event.result = handle.apply( cur, data );
+				if ( event.result === false ) {
+					event.preventDefault();
+				}
+			}
+		}
+		event.type = type;
+
+		// If nobody prevented the default action, do it now
+		if ( !onlyHandlers && !event.isDefaultPrevented() ) {
+
+			if ( ( !special._default ||
+				special._default.apply( eventPath.pop(), data ) === false ) &&
+				acceptData( elem ) ) {
+
+				// Call a native DOM method on the target with the same name as the event.
+				// Don't do default actions on window, that's where global variables be (#6170)
+				if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) {
+
+					// Don't re-trigger an onFOO event when we call its FOO() method
+					tmp = elem[ ontype ];
+
+					if ( tmp ) {
+						elem[ ontype ] = null;
+					}
+
+					// Prevent re-triggering of the same event, since we already bubbled it above
+					jQuery.event.triggered = type;
+
+					if ( event.isPropagationStopped() ) {
+						lastElement.addEventListener( type, stopPropagationCallback );
+					}
+
+					elem[ type ]();
+
+					if ( event.isPropagationStopped() ) {
+						lastElement.removeEventListener( type, stopPropagationCallback );
+					}
+
+					jQuery.event.triggered = undefined;
+
+					if ( tmp ) {
+						elem[ ontype ] = tmp;
+					}
+				}
+			}
+		}
+
+		return event.result;
+	},
+
+	// Piggyback on a donor event to simulate a different one
+	// Used only for `focus(in | out)` events
+	simulate: function( type, elem, event ) {
+		var e = jQuery.extend(
+			new jQuery.Event(),
+			event,
+			{
+				type: type,
+				isSimulated: true
+			}
+		);
+
+		jQuery.event.trigger( e, null, elem );
+	}
+
+} );
+
+jQuery.fn.extend( {
+
+	trigger: function( type, data ) {
+		return this.each( function() {
+			jQuery.event.trigger( type, data, this );
+		} );
+	},
+	triggerHandler: function( type, data ) {
+		var elem = this[ 0 ];
+		if ( elem ) {
+			return jQuery.event.trigger( type, data, elem, true );
+		}
+	}
+} );
+
+
+// Support: Firefox <=44
+// Firefox doesn't have focus(in | out) events
+// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787
+//
+// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1
+// focus(in | out) events fire after focus & blur events,
+// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order
+// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857
+if ( !support.focusin ) {
+	jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) {
+
+		// Attach a single capturing handler on the document while someone wants focusin/focusout
+		var handler = function( event ) {
+			jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) );
+		};
+
+		jQuery.event.special[ fix ] = {
+			setup: function() {
+				var doc = this.ownerDocument || this,
+					attaches = dataPriv.access( doc, fix );
+
+				if ( !attaches ) {
+					doc.addEventListener( orig, handler, true );
+				}
+				dataPriv.access( doc, fix, ( attaches || 0 ) + 1 );
+			},
+			teardown: function() {
+				var doc = this.ownerDocument || this,
+					attaches = dataPriv.access( doc, fix ) - 1;
+
+				if ( !attaches ) {
+					doc.removeEventListener( orig, handler, true );
+					dataPriv.remove( doc, fix );
+
+				} else {
+					dataPriv.access( doc, fix, attaches );
+				}
+			}
+		};
+	} );
+}
+var location = window.location;
+
+var nonce = Date.now();
+
+var rquery = ( /\?/ );
+
+
+
+// Cross-browser xml parsing
+jQuery.parseXML = function( data ) {
+	var xml;
+	if ( !data || typeof data !== "string" ) {
+		return null;
+	}
+
+	// Support: IE 9 - 11 only
+	// IE throws on parseFromString with invalid input.
+	try {
+		xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" );
+	} catch ( e ) {
+		xml = undefined;
+	}
+
+	if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) {
+		jQuery.error( "Invalid XML: " + data );
+	}
+	return xml;
+};
+
+
+var
+	rbracket = /\[\]$/,
+	rCRLF = /\r?\n/g,
+	rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i,
+	rsubmittable = /^(?:input|select|textarea|keygen)/i;
+
+function buildParams( prefix, obj, traditional, add ) {
+	var name;
+
+	if ( Array.isArray( obj ) ) {
+
+		// Serialize array item.
+		jQuery.each( obj, function( i, v ) {
+			if ( traditional || rbracket.test( prefix ) ) {
+
+				// Treat each array item as a scalar.
+				add( prefix, v );
+
+			} else {
+
+				// Item is non-scalar (array or object), encode its numeric index.
+				buildParams(
+					prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]",
+					v,
+					traditional,
+					add
+				);
+			}
+		} );
+
+	} else if ( !traditional && toType( obj ) === "object" ) {
+
+		// Serialize object item.
+		for ( name in obj ) {
+			buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add );
+		}
+
+	} else {
+
+		// Serialize scalar item.
+		add( prefix, obj );
+	}
+}
+
+// Serialize an array of form elements or a set of
+// key/values into a query string
+jQuery.param = function( a, traditional ) {
+	var prefix,
+		s = [],
+		add = function( key, valueOrFunction ) {
+
+			// If value is a function, invoke it and use its return value
+			var value = isFunction( valueOrFunction ) ?
+				valueOrFunction() :
+				valueOrFunction;
+
+			s[ s.length ] = encodeURIComponent( key ) + "=" +
+				encodeURIComponent( value == null ? "" : value );
+		};
+
+	if ( a == null ) {
+		return "";
+	}
+
+	// If an array was passed in, assume that it is an array of form elements.
+	if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) {
+
+		// Serialize the form elements
+		jQuery.each( a, function() {
+			add( this.name, this.value );
+		} );
+
+	} else {
+
+		// If traditional, encode the "old" way (the way 1.3.2 or older
+		// did it), otherwise encode params recursively.
+		for ( prefix in a ) {
+			buildParams( prefix, a[ prefix ], traditional, add );
+		}
+	}
+
+	// Return the resulting serialization
+	return s.join( "&" );
+};
+
+jQuery.fn.extend( {
+	serialize: function() {
+		return jQuery.param( this.serializeArray() );
+	},
+	serializeArray: function() {
+		return this.map( function() {
+
+			// Can add propHook for "elements" to filter or add form elements
+			var elements = jQuery.prop( this, "elements" );
+			return elements ? jQuery.makeArray( elements ) : this;
+		} )
+		.filter( function() {
+			var type = this.type;
+
+			// Use .is( ":disabled" ) so that fieldset[disabled] works
+			return this.name && !jQuery( this ).is( ":disabled" ) &&
+				rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) &&
+				( this.checked || !rcheckableType.test( type ) );
+		} )
+		.map( function( i, elem ) {
+			var val = jQuery( this ).val();
+
+			if ( val == null ) {
+				return null;
+			}
+
+			if ( Array.isArray( val ) ) {
+				return jQuery.map( val, function( val ) {
+					return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
+				} );
+			}
+
+			return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
+		} ).get();
+	}
+} );
+
+
+var
+	r20 = /%20/g,
+	rhash = /#.*$/,
+	rantiCache = /([?&])_=[^&]*/,
+	rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg,
+
+	// #7653, #8125, #8152: local protocol detection
+	rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/,
+	rnoContent = /^(?:GET|HEAD)$/,
+	rprotocol = /^\/\//,
+
+	/* Prefilters
+	 * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example)
+	 * 2) These are called:
+	 *    - BEFORE asking for a transport
+	 *    - AFTER param serialization (s.data is a string if s.processData is true)
+	 * 3) key is the dataType
+	 * 4) the catchall symbol "*" can be used
+	 * 5) execution will start with transport dataType and THEN continue down to "*" if needed
+	 */
+	prefilters = {},
+
+	/* Transports bindings
+	 * 1) key is the dataType
+	 * 2) the catchall symbol "*" can be used
+	 * 3) selection will start with transport dataType and THEN go to "*" if needed
+	 */
+	transports = {},
+
+	// Avoid comment-prolog char sequence (#10098); must appease lint and evade compression
+	allTypes = "*/".concat( "*" ),
+
+	// Anchor tag for parsing the document origin
+	originAnchor = document.createElement( "a" );
+	originAnchor.href = location.href;
+
+// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport
+function addToPrefiltersOrTransports( structure ) {
+
+	// dataTypeExpression is optional and defaults to "*"
+	return function( dataTypeExpression, func ) {
+
+		if ( typeof dataTypeExpression !== "string" ) {
+			func = dataTypeExpression;
+			dataTypeExpression = "*";
+		}
+
+		var dataType,
+			i = 0,
+			dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || [];
+
+		if ( isFunction( func ) ) {
+
+			// For each dataType in the dataTypeExpression
+			while ( ( dataType = dataTypes[ i++ ] ) ) {
+
+				// Prepend if requested
+				if ( dataType[ 0 ] === "+" ) {
+					dataType = dataType.slice( 1 ) || "*";
+					( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func );
+
+				// Otherwise append
+				} else {
+					( structure[ dataType ] = structure[ dataType ] || [] ).push( func );
+				}
+			}
+		}
+	};
+}
+
+// Base inspection function for prefilters and transports
+function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) {
+
+	var inspected = {},
+		seekingTransport = ( structure === transports );
+
+	function inspect( dataType ) {
+		var selected;
+		inspected[ dataType ] = true;
+		jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) {
+			var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR );
+			if ( typeof dataTypeOrTransport === "string" &&
+				!seekingTransport && !inspected[ dataTypeOrTransport ] ) {
+
+				options.dataTypes.unshift( dataTypeOrTransport );
+				inspect( dataTypeOrTransport );
+				return false;
+			} else if ( seekingTransport ) {
+				return !( selected = dataTypeOrTransport );
+			}
+		} );
+		return selected;
+	}
+
+	return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" );
+}
+
+// A special extend for ajax options
+// that takes "flat" options (not to be deep extended)
+// Fixes #9887
+function ajaxExtend( target, src ) {
+	var key, deep,
+		flatOptions = jQuery.ajaxSettings.flatOptions || {};
+
+	for ( key in src ) {
+		if ( src[ key ] !== undefined ) {
+			( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ];
+		}
+	}
+	if ( deep ) {
+		jQuery.extend( true, target, deep );
+	}
+
+	return target;
+}
+
+/* Handles responses to an ajax request:
+ * - finds the right dataType (mediates between content-type and expected dataType)
+ * - returns the corresponding response
+ */
+function ajaxHandleResponses( s, jqXHR, responses ) {
+
+	var ct, type, finalDataType, firstDataType,
+		contents = s.contents,
+		dataTypes = s.dataTypes;
+
+	// Remove auto dataType and get content-type in the process
+	while ( dataTypes[ 0 ] === "*" ) {
+		dataTypes.shift();
+		if ( ct === undefined ) {
+			ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" );
+		}
+	}
+
+	// Check if we're dealing with a known content-type
+	if ( ct ) {
+		for ( type in contents ) {
+			if ( contents[ type ] && contents[ type ].test( ct ) ) {
+				dataTypes.unshift( type );
+				break;
+			}
+		}
+	}
+
+	// Check to see if we have a response for the expected dataType
+	if ( dataTypes[ 0 ] in responses ) {
+		finalDataType = dataTypes[ 0 ];
+	} else {
+
+		// Try convertible dataTypes
+		for ( type in responses ) {
+			if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) {
+				finalDataType = type;
+				break;
+			}
+			if ( !firstDataType ) {
+				firstDataType = type;
+			}
+		}
+
+		// Or just use first one
+		finalDataType = finalDataType || firstDataType;
+	}
+
+	// If we found a dataType
+	// We add the dataType to the list if needed
+	// and return the corresponding response
+	if ( finalDataType ) {
+		if ( finalDataType !== dataTypes[ 0 ] ) {
+			dataTypes.unshift( finalDataType );
+		}
+		return responses[ finalDataType ];
+	}
+}
+
+/* Chain conversions given the request and the original response
+ * Also sets the responseXXX fields on the jqXHR instance
+ */
+function ajaxConvert( s, response, jqXHR, isSuccess ) {
+	var conv2, current, conv, tmp, prev,
+		converters = {},
+
+		// Work with a copy of dataTypes in case we need to modify it for conversion
+		dataTypes = s.dataTypes.slice();
+
+	// Create converters map with lowercased keys
+	if ( dataTypes[ 1 ] ) {
+		for ( conv in s.converters ) {
+			converters[ conv.toLowerCase() ] = s.converters[ conv ];
+		}
+	}
+
+	current = dataTypes.shift();
+
+	// Convert to each sequential dataType
+	while ( current ) {
+
+		if ( s.responseFields[ current ] ) {
+			jqXHR[ s.responseFields[ current ] ] = response;
+		}
+
+		// Apply the dataFilter if provided
+		if ( !prev && isSuccess && s.dataFilter ) {
+			response = s.dataFilter( response, s.dataType );
+		}
+
+		prev = current;
+		current = dataTypes.shift();
+
+		if ( current ) {
+
+			// There's only work to do if current dataType is non-auto
+			if ( current === "*" ) {
+
+				current = prev;
+
+			// Convert response if prev dataType is non-auto and differs from current
+			} else if ( prev !== "*" && prev !== current ) {
+
+				// Seek a direct converter
+				conv = converters[ prev + " " + current ] || converters[ "* " + current ];
+
+				// If none found, seek a pair
+				if ( !conv ) {
+					for ( conv2 in converters ) {
+
+						// If conv2 outputs current
+						tmp = conv2.split( " " );
+						if ( tmp[ 1 ] === current ) {
+
+							// If prev can be converted to accepted input
+							conv = converters[ prev + " " + tmp[ 0 ] ] ||
+								converters[ "* " + tmp[ 0 ] ];
+							if ( conv ) {
+
+								// Condense equivalence converters
+								if ( conv === true ) {
+									conv = converters[ conv2 ];
+
+								// Otherwise, insert the intermediate dataType
+								} else if ( converters[ conv2 ] !== true ) {
+									current = tmp[ 0 ];
+									dataTypes.unshift( tmp[ 1 ] );
+								}
+								break;
+							}
+						}
+					}
+				}
+
+				// Apply converter (if not an equivalence)
+				if ( conv !== true ) {
+
+					// Unless errors are allowed to bubble, catch and return them
+					if ( conv && s.throws ) {
+						response = conv( response );
+					} else {
+						try {
+							response = conv( response );
+						} catch ( e ) {
+							return {
+								state: "parsererror",
+								error: conv ? e : "No conversion from " + prev + " to " + current
+							};
+						}
+					}
+				}
+			}
+		}
+	}
+
+	return { state: "success", data: response };
+}
+
+jQuery.extend( {
+
+	// Counter for holding the number of active queries
+	active: 0,
+
+	// Last-Modified header cache for next request
+	lastModified: {},
+	etag: {},
+
+	ajaxSettings: {
+		url: location.href,
+		type: "GET",
+		isLocal: rlocalProtocol.test( location.protocol ),
+		global: true,
+		processData: true,
+		async: true,
+		contentType: "application/x-www-form-urlencoded; charset=UTF-8",
+
+		/*
+		timeout: 0,
+		data: null,
+		dataType: null,
+		username: null,
+		password: null,
+		cache: null,
+		throws: false,
+		traditional: false,
+		headers: {},
+		*/
+
+		accepts: {
+			"*": allTypes,
+			text: "text/plain",
+			html: "text/html",
+			xml: "application/xml, text/xml",
+			json: "application/json, text/javascript"
+		},
+
+		contents: {
+			xml: /\bxml\b/,
+			html: /\bhtml/,
+			json: /\bjson\b/
+		},
+
+		responseFields: {
+			xml: "responseXML",
+			text: "responseText",
+			json: "responseJSON"
+		},
+
+		// Data converters
+		// Keys separate source (or catchall "*") and destination types with a single space
+		converters: {
+
+			// Convert anything to text
+			"* text": String,
+
+			// Text to html (true = no transformation)
+			"text html": true,
+
+			// Evaluate text as a json expression
+			"text json": JSON.parse,
+
+			// Parse text as xml
+			"text xml": jQuery.parseXML
+		},
+
+		// For options that shouldn't be deep extended:
+		// you can add your own custom options here if
+		// and when you create one that shouldn't be
+		// deep extended (see ajaxExtend)
+		flatOptions: {
+			url: true,
+			context: true
+		}
+	},
+
+	// Creates a full fledged settings object into target
+	// with both ajaxSettings and settings fields.
+	// If target is omitted, writes into ajaxSettings.
+	ajaxSetup: function( target, settings ) {
+		return settings ?
+
+			// Building a settings object
+			ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) :
+
+			// Extending ajaxSettings
+			ajaxExtend( jQuery.ajaxSettings, target );
+	},
+
+	ajaxPrefilter: addToPrefiltersOrTransports( prefilters ),
+	ajaxTransport: addToPrefiltersOrTransports( transports ),
+
+	// Main method
+	ajax: function( url, options ) {
+
+		// If url is an object, simulate pre-1.5 signature
+		if ( typeof url === "object" ) {
+			options = url;
+			url = undefined;
+		}
+
+		// Force options to be an object
+		options = options || {};
+
+		var transport,
+
+			// URL without anti-cache param
+			cacheURL,
+
+			// Response headers
+			responseHeadersString,
+			responseHeaders,
+
+			// timeout handle
+			timeoutTimer,
+
+			// Url cleanup var
+			urlAnchor,
+
+			// Request state (becomes false upon send and true upon completion)
+			completed,
+
+			// To know if global events are to be dispatched
+			fireGlobals,
+
+			// Loop variable
+			i,
+
+			// uncached part of the url
+			uncached,
+
+			// Create the final options object
+			s = jQuery.ajaxSetup( {}, options ),
+
+			// Callbacks context
+			callbackContext = s.context || s,
+
+			// Context for global events is callbackContext if it is a DOM node or jQuery collection
+			globalEventContext = s.context &&
+				( callbackContext.nodeType || callbackContext.jquery ) ?
+					jQuery( callbackContext ) :
+					jQuery.event,
+
+			// Deferreds
+			deferred = jQuery.Deferred(),
+			completeDeferred = jQuery.Callbacks( "once memory" ),
+
+			// Status-dependent callbacks
+			statusCode = s.statusCode || {},
+
+			// Headers (they are sent all at once)
+			requestHeaders = {},
+			requestHeadersNames = {},
+
+			// Default abort message
+			strAbort = "canceled",
+
+			// Fake xhr
+			jqXHR = {
+				readyState: 0,
+
+				// Builds headers hashtable if needed
+				getResponseHeader: function( key ) {
+					var match;
+					if ( completed ) {
+						if ( !responseHeaders ) {
+							responseHeaders = {};
+							while ( ( match = rheaders.exec( responseHeadersString ) ) ) {
+								responseHeaders[ match[ 1 ].toLowerCase() + " " ] =
+									( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] )
+										.concat( match[ 2 ] );
+							}
+						}
+						match = responseHeaders[ key.toLowerCase() + " " ];
+					}
+					return match == null ? null : match.join( ", " );
+				},
+
+				// Raw string
+				getAllResponseHeaders: function() {
+					return completed ? responseHeadersString : null;
+				},
+
+				// Caches the header
+				setRequestHeader: function( name, value ) {
+					if ( completed == null ) {
+						name = requestHeadersNames[ name.toLowerCase() ] =
+							requestHeadersNames[ name.toLowerCase() ] || name;
+						requestHeaders[ name ] = value;
+					}
+					return this;
+				},
+
+				// Overrides response content-type header
+				overrideMimeType: function( type ) {
+					if ( completed == null ) {
+						s.mimeType = type;
+					}
+					return this;
+				},
+
+				// Status-dependent callbacks
+				statusCode: function( map ) {
+					var code;
+					if ( map ) {
+						if ( completed ) {
+
+							// Execute the appropriate callbacks
+							jqXHR.always( map[ jqXHR.status ] );
+						} else {
+
+							// Lazy-add the new callbacks in a way that preserves old ones
+							for ( code in map ) {
+								statusCode[ code ] = [ statusCode[ code ], map[ code ] ];
+							}
+						}
+					}
+					return this;
+				},
+
+				// Cancel the request
+				abort: function( statusText ) {
+					var finalText = statusText || strAbort;
+					if ( transport ) {
+						transport.abort( finalText );
+					}
+					done( 0, finalText );
+					return this;
+				}
+			};
+
+		// Attach deferreds
+		deferred.promise( jqXHR );
+
+		// Add protocol if not provided (prefilters might expect it)
+		// Handle falsy url in the settings object (#10093: consistency with old signature)
+		// We also use the url parameter if available
+		s.url = ( ( url || s.url || location.href ) + "" )
+			.replace( rprotocol, location.protocol + "//" );
+
+		// Alias method option to type as per ticket #12004
+		s.type = options.method || options.type || s.method || s.type;
+
+		// Extract dataTypes list
+		s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ];
+
+		// A cross-domain request is in order when the origin doesn't match the current origin.
+		if ( s.crossDomain == null ) {
+			urlAnchor = document.createElement( "a" );
+
+			// Support: IE <=8 - 11, Edge 12 - 15
+			// IE throws exception on accessing the href property if url is malformed,
+			// e.g. http://example.com:80x/
+			try {
+				urlAnchor.href = s.url;
+
+				// Support: IE <=8 - 11 only
+				// Anchor's host property isn't correctly set when s.url is relative
+				urlAnchor.href = urlAnchor.href;
+				s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !==
+					urlAnchor.protocol + "//" + urlAnchor.host;
+			} catch ( e ) {
+
+				// If there is an error parsing the URL, assume it is crossDomain,
+				// it can be rejected by the transport if it is invalid
+				s.crossDomain = true;
+			}
+		}
+
+		// Convert data if not already a string
+		if ( s.data && s.processData && typeof s.data !== "string" ) {
+			s.data = jQuery.param( s.data, s.traditional );
+		}
+
+		// Apply prefilters
+		inspectPrefiltersOrTransports( prefilters, s, options, jqXHR );
+
+		// If request was aborted inside a prefilter, stop there
+		if ( completed ) {
+			return jqXHR;
+		}
+
+		// We can fire global events as of now if asked to
+		// Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118)
+		fireGlobals = jQuery.event && s.global;
+
+		// Watch for a new set of requests
+		if ( fireGlobals && jQuery.active++ === 0 ) {
+			jQuery.event.trigger( "ajaxStart" );
+		}
+
+		// Uppercase the type
+		s.type = s.type.toUpperCase();
+
+		// Determine if request has content
+		s.hasContent = !rnoContent.test( s.type );
+
+		// Save the URL in case we're toying with the If-Modified-Since
+		// and/or If-None-Match header later on
+		// Remove hash to simplify url manipulation
+		cacheURL = s.url.replace( rhash, "" );
+
+		// More options handling for requests with no content
+		if ( !s.hasContent ) {
+
+			// Remember the hash so we can put it back
+			uncached = s.url.slice( cacheURL.length );
+
+			// If data is available and should be processed, append data to url
+			if ( s.data && ( s.processData || typeof s.data === "string" ) ) {
+				cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data;
+
+				// #9682: remove data so that it's not used in an eventual retry
+				delete s.data;
+			}
+
+			// Add or update anti-cache param if needed
+			if ( s.cache === false ) {
+				cacheURL = cacheURL.replace( rantiCache, "$1" );
+				uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached;
+			}
+
+			// Put hash and anti-cache on the URL that will be requested (gh-1732)
+			s.url = cacheURL + uncached;
+
+		// Change '%20' to '+' if this is encoded form body content (gh-2658)
+		} else if ( s.data && s.processData &&
+			( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) {
+			s.data = s.data.replace( r20, "+" );
+		}
+
+		// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
+		if ( s.ifModified ) {
+			if ( jQuery.lastModified[ cacheURL ] ) {
+				jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] );
+			}
+			if ( jQuery.etag[ cacheURL ] ) {
+				jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] );
+			}
+		}
+
+		// Set the correct header, if data is being sent
+		if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) {
+			jqXHR.setRequestHeader( "Content-Type", s.contentType );
+		}
+
+		// Set the Accepts header for the server, depending on the dataType
+		jqXHR.setRequestHeader(
+			"Accept",
+			s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ?
+				s.accepts[ s.dataTypes[ 0 ] ] +
+					( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) :
+				s.accepts[ "*" ]
+		);
+
+		// Check for headers option
+		for ( i in s.headers ) {
+			jqXHR.setRequestHeader( i, s.headers[ i ] );
+		}
+
+		// Allow custom headers/mimetypes and early abort
+		if ( s.beforeSend &&
+			( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) {
+
+			// Abort if not done already and return
+			return jqXHR.abort();
+		}
+
+		// Aborting is no longer a cancellation
+		strAbort = "abort";
+
+		// Install callbacks on deferreds
+		completeDeferred.add( s.complete );
+		jqXHR.done( s.success );
+		jqXHR.fail( s.error );
+
+		// Get transport
+		transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR );
+
+		// If no transport, we auto-abort
+		if ( !transport ) {
+			done( -1, "No Transport" );
+		} else {
+			jqXHR.readyState = 1;
+
+			// Send global event
+			if ( fireGlobals ) {
+				globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] );
+			}
+
+			// If request was aborted inside ajaxSend, stop there
+			if ( completed ) {
+				return jqXHR;
+			}
+
+			// Timeout
+			if ( s.async && s.timeout > 0 ) {
+				timeoutTimer = window.setTimeout( function() {
+					jqXHR.abort( "timeout" );
+				}, s.timeout );
+			}
+
+			try {
+				completed = false;
+				transport.send( requestHeaders, done );
+			} catch ( e ) {
+
+				// Rethrow post-completion exceptions
+				if ( completed ) {
+					throw e;
+				}
+
+				// Propagate others as results
+				done( -1, e );
+			}
+		}
+
+		// Callback for when everything is done
+		function done( status, nativeStatusText, responses, headers ) {
+			var isSuccess, success, error, response, modified,
+				statusText = nativeStatusText;
+
+			// Ignore repeat invocations
+			if ( completed ) {
+				return;
+			}
+
+			completed = true;
+
+			// Clear timeout if it exists
+			if ( timeoutTimer ) {
+				window.clearTimeout( timeoutTimer );
+			}
+
+			// Dereference transport for early garbage collection
+			// (no matter how long the jqXHR object will be used)
+			transport = undefined;
+
+			// Cache response headers
+			responseHeadersString = headers || "";
+
+			// Set readyState
+			jqXHR.readyState = status > 0 ? 4 : 0;
+
+			// Determine if successful
+			isSuccess = status >= 200 && status < 300 || status === 304;
+
+			// Get response data
+			if ( responses ) {
+				response = ajaxHandleResponses( s, jqXHR, responses );
+			}
+
+			// Convert no matter what (that way responseXXX fields are always set)
+			response = ajaxConvert( s, response, jqXHR, isSuccess );
+
+			// If successful, handle type chaining
+			if ( isSuccess ) {
+
+				// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
+				if ( s.ifModified ) {
+					modified = jqXHR.getResponseHeader( "Last-Modified" );
+					if ( modified ) {
+						jQuery.lastModified[ cacheURL ] = modified;
+					}
+					modified = jqXHR.getResponseHeader( "etag" );
+					if ( modified ) {
+						jQuery.etag[ cacheURL ] = modified;
+					}
+				}
+
+				// if no content
+				if ( status === 204 || s.type === "HEAD" ) {
+					statusText = "nocontent";
+
+				// if not modified
+				} else if ( status === 304 ) {
+					statusText = "notmodified";
+
+				// If we have data, let's convert it
+				} else {
+					statusText = response.state;
+					success = response.data;
+					error = response.error;
+					isSuccess = !error;
+				}
+			} else {
+
+				// Extract error from statusText and normalize for non-aborts
+				error = statusText;
+				if ( status || !statusText ) {
+					statusText = "error";
+					if ( status < 0 ) {
+						status = 0;
+					}
+				}
+			}
+
+			// Set data for the fake xhr object
+			jqXHR.status = status;
+			jqXHR.statusText = ( nativeStatusText || statusText ) + "";
+
+			// Success/Error
+			if ( isSuccess ) {
+				deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] );
+			} else {
+				deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] );
+			}
+
+			// Status-dependent callbacks
+			jqXHR.statusCode( statusCode );
+			statusCode = undefined;
+
+			if ( fireGlobals ) {
+				globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError",
+					[ jqXHR, s, isSuccess ? success : error ] );
+			}
+
+			// Complete
+			completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] );
+
+			if ( fireGlobals ) {
+				globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] );
+
+				// Handle the global AJAX counter
+				if ( !( --jQuery.active ) ) {
+					jQuery.event.trigger( "ajaxStop" );
+				}
+			}
+		}
+
+		return jqXHR;
+	},
+
+	getJSON: function( url, data, callback ) {
+		return jQuery.get( url, data, callback, "json" );
+	},
+
+	getScript: function( url, callback ) {
+		return jQuery.get( url, undefined, callback, "script" );
+	}
+} );
+
+jQuery.each( [ "get", "post" ], function( i, method ) {
+	jQuery[ method ] = function( url, data, callback, type ) {
+
+		// Shift arguments if data argument was omitted
+		if ( isFunction( data ) ) {
+			type = type || callback;
+			callback = data;
+			data = undefined;
+		}
+
+		// The url can be an options object (which then must have .url)
+		return jQuery.ajax( jQuery.extend( {
+			url: url,
+			type: method,
+			dataType: type,
+			data: data,
+			success: callback
+		}, jQuery.isPlainObject( url ) && url ) );
+	};
+} );
+
+
+jQuery._evalUrl = function( url, options ) {
+	return jQuery.ajax( {
+		url: url,
+
+		// Make this explicit, since user can override this through ajaxSetup (#11264)
+		type: "GET",
+		dataType: "script",
+		cache: true,
+		async: false,
+		global: false,
+
+		// Only evaluate the response if it is successful (gh-4126)
+		// dataFilter is not invoked for failure responses, so using it instead
+		// of the default converter is kludgy but it works.
+		converters: {
+			"text script": function() {}
+		},
+		dataFilter: function( response ) {
+			jQuery.globalEval( response, options );
+		}
+	} );
+};
+
+
+jQuery.fn.extend( {
+	wrapAll: function( html ) {
+		var wrap;
+
+		if ( this[ 0 ] ) {
+			if ( isFunction( html ) ) {
+				html = html.call( this[ 0 ] );
+			}
+
+			// The elements to wrap the target around
+			wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true );
+
+			if ( this[ 0 ].parentNode ) {
+				wrap.insertBefore( this[ 0 ] );
+			}
+
+			wrap.map( function() {
+				var elem = this;
+
+				while ( elem.firstElementChild ) {
+					elem = elem.firstElementChild;
+				}
+
+				return elem;
+			} ).append( this );
+		}
+
+		return this;
+	},
+
+	wrapInner: function( html ) {
+		if ( isFunction( html ) ) {
+			return this.each( function( i ) {
+				jQuery( this ).wrapInner( html.call( this, i ) );
+			} );
+		}
+
+		return this.each( function() {
+			var self = jQuery( this ),
+				contents = self.contents();
+
+			if ( contents.length ) {
+				contents.wrapAll( html );
+
+			} else {
+				self.append( html );
+			}
+		} );
+	},
+
+	wrap: function( html ) {
+		var htmlIsFunction = isFunction( html );
+
+		return this.each( function( i ) {
+			jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html );
+		} );
+	},
+
+	unwrap: function( selector ) {
+		this.parent( selector ).not( "body" ).each( function() {
+			jQuery( this ).replaceWith( this.childNodes );
+		} );
+		return this;
+	}
+} );
+
+
+jQuery.expr.pseudos.hidden = function( elem ) {
+	return !jQuery.expr.pseudos.visible( elem );
+};
+jQuery.expr.pseudos.visible = function( elem ) {
+	return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length );
+};
+
+
+
+
+jQuery.ajaxSettings.xhr = function() {
+	try {
+		return new window.XMLHttpRequest();
+	} catch ( e ) {}
+};
+
+var xhrSuccessStatus = {
+
+		// File protocol always yields status code 0, assume 200
+		0: 200,
+
+		// Support: IE <=9 only
+		// #1450: sometimes IE returns 1223 when it should be 204
+		1223: 204
+	},
+	xhrSupported = jQuery.ajaxSettings.xhr();
+
+support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported );
+support.ajax = xhrSupported = !!xhrSupported;
+
+jQuery.ajaxTransport( function( options ) {
+	var callback, errorCallback;
+
+	// Cross domain only allowed if supported through XMLHttpRequest
+	if ( support.cors || xhrSupported && !options.crossDomain ) {
+		return {
+			send: function( headers, complete ) {
+				var i,
+					xhr = options.xhr();
+
+				xhr.open(
+					options.type,
+					options.url,
+					options.async,
+					options.username,
+					options.password
+				);
+
+				// Apply custom fields if provided
+				if ( options.xhrFields ) {
+					for ( i in options.xhrFields ) {
+						xhr[ i ] = options.xhrFields[ i ];
+					}
+				}
+
+				// Override mime type if needed
+				if ( options.mimeType && xhr.overrideMimeType ) {
+					xhr.overrideMimeType( options.mimeType );
+				}
+
+				// X-Requested-With header
+				// For cross-domain requests, seeing as conditions for a preflight are
+				// akin to a jigsaw puzzle, we simply never set it to be sure.
+				// (it can always be set on a per-request basis or even using ajaxSetup)
+				// For same-domain requests, won't change header if already provided.
+				if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) {
+					headers[ "X-Requested-With" ] = "XMLHttpRequest";
+				}
+
+				// Set headers
+				for ( i in headers ) {
+					xhr.setRequestHeader( i, headers[ i ] );
+				}
+
+				// Callback
+				callback = function( type ) {
+					return function() {
+						if ( callback ) {
+							callback = errorCallback = xhr.onload =
+								xhr.onerror = xhr.onabort = xhr.ontimeout =
+									xhr.onreadystatechange = null;
+
+							if ( type === "abort" ) {
+								xhr.abort();
+							} else if ( type === "error" ) {
+
+								// Support: IE <=9 only
+								// On a manual native abort, IE9 throws
+								// errors on any property access that is not readyState
+								if ( typeof xhr.status !== "number" ) {
+									complete( 0, "error" );
+								} else {
+									complete(
+
+										// File: protocol always yields status 0; see #8605, #14207
+										xhr.status,
+										xhr.statusText
+									);
+								}
+							} else {
+								complete(
+									xhrSuccessStatus[ xhr.status ] || xhr.status,
+									xhr.statusText,
+
+									// Support: IE <=9 only
+									// IE9 has no XHR2 but throws on binary (trac-11426)
+									// For XHR2 non-text, let the caller handle it (gh-2498)
+									( xhr.responseType || "text" ) !== "text"  ||
+									typeof xhr.responseText !== "string" ?
+										{ binary: xhr.response } :
+										{ text: xhr.responseText },
+									xhr.getAllResponseHeaders()
+								);
+							}
+						}
+					};
+				};
+
+				// Listen to events
+				xhr.onload = callback();
+				errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" );
+
+				// Support: IE 9 only
+				// Use onreadystatechange to replace onabort
+				// to handle uncaught aborts
+				if ( xhr.onabort !== undefined ) {
+					xhr.onabort = errorCallback;
+				} else {
+					xhr.onreadystatechange = function() {
+
+						// Check readyState before timeout as it changes
+						if ( xhr.readyState === 4 ) {
+
+							// Allow onerror to be called first,
+							// but that will not handle a native abort
+							// Also, save errorCallback to a variable
+							// as xhr.onerror cannot be accessed
+							window.setTimeout( function() {
+								if ( callback ) {
+									errorCallback();
+								}
+							} );
+						}
+					};
+				}
+
+				// Create the abort callback
+				callback = callback( "abort" );
+
+				try {
+
+					// Do send the request (this may raise an exception)
+					xhr.send( options.hasContent && options.data || null );
+				} catch ( e ) {
+
+					// #14683: Only rethrow if this hasn't been notified as an error yet
+					if ( callback ) {
+						throw e;
+					}
+				}
+			},
+
+			abort: function() {
+				if ( callback ) {
+					callback();
+				}
+			}
+		};
+	}
+} );
+
+
+
+
+// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432)
+jQuery.ajaxPrefilter( function( s ) {
+	if ( s.crossDomain ) {
+		s.contents.script = false;
+	}
+} );
+
+// Install script dataType
+jQuery.ajaxSetup( {
+	accepts: {
+		script: "text/javascript, application/javascript, " +
+			"application/ecmascript, application/x-ecmascript"
+	},
+	contents: {
+		script: /\b(?:java|ecma)script\b/
+	},
+	converters: {
+		"text script": function( text ) {
+			jQuery.globalEval( text );
+			return text;
+		}
+	}
+} );
+
+// Handle cache's special case and crossDomain
+jQuery.ajaxPrefilter( "script", function( s ) {
+	if ( s.cache === undefined ) {
+		s.cache = false;
+	}
+	if ( s.crossDomain ) {
+		s.type = "GET";
+	}
+} );
+
+// Bind script tag hack transport
+jQuery.ajaxTransport( "script", function( s ) {
+
+	// This transport only deals with cross domain or forced-by-attrs requests
+	if ( s.crossDomain || s.scriptAttrs ) {
+		var script, callback;
+		return {
+			send: function( _, complete ) {
+				script = jQuery( "<script>" )
+					.attr( s.scriptAttrs || {} )
+					.prop( { charset: s.scriptCharset, src: s.url } )
+					.on( "load error", callback = function( evt ) {
+						script.remove();
+						callback = null;
+						if ( evt ) {
+							complete( evt.type === "error" ? 404 : 200, evt.type );
+						}
+					} );
+
+				// Use native DOM manipulation to avoid our domManip AJAX trickery
+				document.head.appendChild( script[ 0 ] );
+			},
+			abort: function() {
+				if ( callback ) {
+					callback();
+				}
+			}
+		};
+	}
+} );
+
+
+
+
+var oldCallbacks = [],
+	rjsonp = /(=)\?(?=&|$)|\?\?/;
+
+// Default jsonp settings
+jQuery.ajaxSetup( {
+	jsonp: "callback",
+	jsonpCallback: function() {
+		var callback = oldCallbacks.pop() || ( jQuery.expando + "_" + ( nonce++ ) );
+		this[ callback ] = true;
+		return callback;
+	}
+} );
+
+// Detect, normalize options and install callbacks for jsonp requests
+jQuery.ajaxPrefilter( "json jsonp", function( s, originalSettings, jqXHR ) {
+
+	var callbackName, overwritten, responseContainer,
+		jsonProp = s.jsonp !== false && ( rjsonp.test( s.url ) ?
+			"url" :
+			typeof s.data === "string" &&
+				( s.contentType || "" )
+					.indexOf( "application/x-www-form-urlencoded" ) === 0 &&
+				rjsonp.test( s.data ) && "data"
+		);
+
+	// Handle iff the expected data type is "jsonp" or we have a parameter to set
+	if ( jsonProp || s.dataTypes[ 0 ] === "jsonp" ) {
+
+		// Get callback name, remembering preexisting value associated with it
+		callbackName = s.jsonpCallback = isFunction( s.jsonpCallback ) ?
+			s.jsonpCallback() :
+			s.jsonpCallback;
+
+		// Insert callback into url or form data
+		if ( jsonProp ) {
+			s[ jsonProp ] = s[ jsonProp ].replace( rjsonp, "$1" + callbackName );
+		} else if ( s.jsonp !== false ) {
+			s.url += ( rquery.test( s.url ) ? "&" : "?" ) + s.jsonp + "=" + callbackName;
+		}
+
+		// Use data converter to retrieve json after script execution
+		s.converters[ "script json" ] = function() {
+			if ( !responseContainer ) {
+				jQuery.error( callbackName + " was not called" );
+			}
+			return responseContainer[ 0 ];
+		};
+
+		// Force json dataType
+		s.dataTypes[ 0 ] = "json";
+
+		// Install callback
+		overwritten = window[ callbackName ];
+		window[ callbackName ] = function() {
+			responseContainer = arguments;
+		};
+
+		// Clean-up function (fires after converters)
+		jqXHR.always( function() {
+
+			// If previous value didn't exist - remove it
+			if ( overwritten === undefined ) {
+				jQuery( window ).removeProp( callbackName );
+
+			// Otherwise restore preexisting value
+			} else {
+				window[ callbackName ] = overwritten;
+			}
+
+			// Save back as free
+			if ( s[ callbackName ] ) {
+
+				// Make sure that re-using the options doesn't screw things around
+				s.jsonpCallback = originalSettings.jsonpCallback;
+
+				// Save the callback name for future use
+				oldCallbacks.push( callbackName );
+			}
+
+			// Call if it was a function and we have a response
+			if ( responseContainer && isFunction( overwritten ) ) {
+				overwritten( responseContainer[ 0 ] );
+			}
+
+			responseContainer = overwritten = undefined;
+		} );
+
+		// Delegate to script
+		return "script";
+	}
+} );
+
+
+
+
+// Support: Safari 8 only
+// In Safari 8 documents created via document.implementation.createHTMLDocument
+// collapse sibling forms: the second one becomes a child of the first one.
+// Because of that, this security measure has to be disabled in Safari 8.
+// https://bugs.webkit.org/show_bug.cgi?id=137337
+support.createHTMLDocument = ( function() {
+	var body = document.implementation.createHTMLDocument( "" ).body;
+	body.innerHTML = "<form></form><form></form>";
+	return body.childNodes.length === 2;
+} )();
+
+
+// Argument "data" should be string of html
+// context (optional): If specified, the fragment will be created in this context,
+// defaults to document
+// keepScripts (optional): If true, will include scripts passed in the html string
+jQuery.parseHTML = function( data, context, keepScripts ) {
+	if ( typeof data !== "string" ) {
+		return [];
+	}
+	if ( typeof context === "boolean" ) {
+		keepScripts = context;
+		context = false;
+	}
+
+	var base, parsed, scripts;
+
+	if ( !context ) {
+
+		// Stop scripts or inline event handlers from being executed immediately
+		// by using document.implementation
+		if ( support.createHTMLDocument ) {
+			context = document.implementation.createHTMLDocument( "" );
+
+			// Set the base href for the created document
+			// so any parsed elements with URLs
+			// are based on the document's URL (gh-2965)
+			base = context.createElement( "base" );
+			base.href = document.location.href;
+			context.head.appendChild( base );
+		} else {
+			context = document;
+		}
+	}
+
+	parsed = rsingleTag.exec( data );
+	scripts = !keepScripts && [];
+
+	// Single tag
+	if ( parsed ) {
+		return [ context.createElement( parsed[ 1 ] ) ];
+	}
+
+	parsed = buildFragment( [ data ], context, scripts );
+
+	if ( scripts && scripts.length ) {
+		jQuery( scripts ).remove();
+	}
+
+	return jQuery.merge( [], parsed.childNodes );
+};
+
+
+/**
+ * Load a url into a page
+ */
+jQuery.fn.load = function( url, params, callback ) {
+	var selector, type, response,
+		self = this,
+		off = url.indexOf( " " );
+
+	if ( off > -1 ) {
+		selector = stripAndCollapse( url.slice( off ) );
+		url = url.slice( 0, off );
+	}
+
+	// If it's a function
+	if ( isFunction( params ) ) {
+
+		// We assume that it's the callback
+		callback = params;
+		params = undefined;
+
+	// Otherwise, build a param string
+	} else if ( params && typeof params === "object" ) {
+		type = "POST";
+	}
+
+	// If we have elements to modify, make the request
+	if ( self.length > 0 ) {
+		jQuery.ajax( {
+			url: url,
+
+			// If "type" variable is undefined, then "GET" method will be used.
+			// Make value of this field explicit since
+			// user can override it through ajaxSetup method
+			type: type || "GET",
+			dataType: "html",
+			data: params
+		} ).done( function( responseText ) {
+
+			// Save response for use in complete callback
+			response = arguments;
+
+			self.html( selector ?
+
+				// If a selector was specified, locate the right elements in a dummy div
+				// Exclude scripts to avoid IE 'Permission Denied' errors
+				jQuery( "<div>" ).append( jQuery.parseHTML( responseText ) ).find( selector ) :
+
+				// Otherwise use the full result
+				responseText );
+
+		// If the request succeeds, this function gets "data", "status", "jqXHR"
+		// but they are ignored because response was set above.
+		// If it fails, this function gets "jqXHR", "status", "error"
+		} ).always( callback && function( jqXHR, status ) {
+			self.each( function() {
+				callback.apply( this, response || [ jqXHR.responseText, status, jqXHR ] );
+			} );
+		} );
+	}
+
+	return this;
+};
+
+
+
+
+// Attach a bunch of functions for handling common AJAX events
+jQuery.each( [
+	"ajaxStart",
+	"ajaxStop",
+	"ajaxComplete",
+	"ajaxError",
+	"ajaxSuccess",
+	"ajaxSend"
+], function( i, type ) {
+	jQuery.fn[ type ] = function( fn ) {
+		return this.on( type, fn );
+	};
+} );
+
+
+
+
+jQuery.expr.pseudos.animated = function( elem ) {
+	return jQuery.grep( jQuery.timers, function( fn ) {
+		return elem === fn.elem;
+	} ).length;
+};
+
+
+
+
+jQuery.offset = {
+	setOffset: function( elem, options, i ) {
+		var curPosition, curLeft, curCSSTop, curTop, curOffset, curCSSLeft, calculatePosition,
+			position = jQuery.css( elem, "position" ),
+			curElem = jQuery( elem ),
+			props = {};
+
+		// Set position first, in-case top/left are set even on static elem
+		if ( position === "static" ) {
+			elem.style.position = "relative";
+		}
+
+		curOffset = curElem.offset();
+		curCSSTop = jQuery.css( elem, "top" );
+		curCSSLeft = jQuery.css( elem, "left" );
+		calculatePosition = ( position === "absolute" || position === "fixed" ) &&
+			( curCSSTop + curCSSLeft ).indexOf( "auto" ) > -1;
+
+		// Need to be able to calculate position if either
+		// top or left is auto and position is either absolute or fixed
+		if ( calculatePosition ) {
+			curPosition = curElem.position();
+			curTop = curPosition.top;
+			curLeft = curPosition.left;
+
+		} else {
+			curTop = parseFloat( curCSSTop ) || 0;
+			curLeft = parseFloat( curCSSLeft ) || 0;
+		}
+
+		if ( isFunction( options ) ) {
+
+			// Use jQuery.extend here to allow modification of coordinates argument (gh-1848)
+			options = options.call( elem, i, jQuery.extend( {}, curOffset ) );
+		}
+
+		if ( options.top != null ) {
+			props.top = ( options.top - curOffset.top ) + curTop;
+		}
+		if ( options.left != null ) {
+			props.left = ( options.left - curOffset.left ) + curLeft;
+		}
+
+		if ( "using" in options ) {
+			options.using.call( elem, props );
+
+		} else {
+			curElem.css( props );
+		}
+	}
+};
+
+jQuery.fn.extend( {
+
+	// offset() relates an element's border box to the document origin
+	offset: function( options ) {
+
+		// Preserve chaining for setter
+		if ( arguments.length ) {
+			return options === undefined ?
+				this :
+				this.each( function( i ) {
+					jQuery.offset.setOffset( this, options, i );
+				} );
+		}
+
+		var rect, win,
+			elem = this[ 0 ];
+
+		if ( !elem ) {
+			return;
+		}
+
+		// Return zeros for disconnected and hidden (display: none) elements (gh-2310)
+		// Support: IE <=11 only
+		// Running getBoundingClientRect on a
+		// disconnected node in IE throws an error
+		if ( !elem.getClientRects().length ) {
+			return { top: 0, left: 0 };
+		}
+
+		// Get document-relative position by adding viewport scroll to viewport-relative gBCR
+		rect = elem.getBoundingClientRect();
+		win = elem.ownerDocument.defaultView;
+		return {
+			top: rect.top + win.pageYOffset,
+			left: rect.left + win.pageXOffset
+		};
+	},
+
+	// position() relates an element's margin box to its offset parent's padding box
+	// This corresponds to the behavior of CSS absolute positioning
+	position: function() {
+		if ( !this[ 0 ] ) {
+			return;
+		}
+
+		var offsetParent, offset, doc,
+			elem = this[ 0 ],
+			parentOffset = { top: 0, left: 0 };
+
+		// position:fixed elements are offset from the viewport, which itself always has zero offset
+		if ( jQuery.css( elem, "position" ) === "fixed" ) {
+
+			// Assume position:fixed implies availability of getBoundingClientRect
+			offset = elem.getBoundingClientRect();
+
+		} else {
+			offset = this.offset();
+
+			// Account for the *real* offset parent, which can be the document or its root element
+			// when a statically positioned element is identified
+			doc = elem.ownerDocument;
+			offsetParent = elem.offsetParent || doc.documentElement;
+			while ( offsetParent &&
+				( offsetParent === doc.body || offsetParent === doc.documentElement ) &&
+				jQuery.css( offsetParent, "position" ) === "static" ) {
+
+				offsetParent = offsetParent.parentNode;
+			}
+			if ( offsetParent && offsetParent !== elem && offsetParent.nodeType === 1 ) {
+
+				// Incorporate borders into its offset, since they are outside its content origin
+				parentOffset = jQuery( offsetParent ).offset();
+				parentOffset.top += jQuery.css( offsetParent, "borderTopWidth", true );
+				parentOffset.left += jQuery.css( offsetParent, "borderLeftWidth", true );
+			}
+		}
+
+		// Subtract parent offsets and element margins
+		return {
+			top: offset.top - parentOffset.top - jQuery.css( elem, "marginTop", true ),
+			left: offset.left - parentOffset.left - jQuery.css( elem, "marginLeft", true )
+		};
+	},
+
+	// This method will return documentElement in the following cases:
+	// 1) For the element inside the iframe without offsetParent, this method will return
+	//    documentElement of the parent window
+	// 2) For the hidden or detached element
+	// 3) For body or html element, i.e. in case of the html node - it will return itself
+	//
+	// but those exceptions were never presented as a real life use-cases
+	// and might be considered as more preferable results.
+	//
+	// This logic, however, is not guaranteed and can change at any point in the future
+	offsetParent: function() {
+		return this.map( function() {
+			var offsetParent = this.offsetParent;
+
+			while ( offsetParent && jQuery.css( offsetParent, "position" ) === "static" ) {
+				offsetParent = offsetParent.offsetParent;
+			}
+
+			return offsetParent || documentElement;
+		} );
+	}
+} );
+
+// Create scrollLeft and scrollTop methods
+jQuery.each( { scrollLeft: "pageXOffset", scrollTop: "pageYOffset" }, function( method, prop ) {
+	var top = "pageYOffset" === prop;
+
+	jQuery.fn[ method ] = function( val ) {
+		return access( this, function( elem, method, val ) {
+
+			// Coalesce documents and windows
+			var win;
+			if ( isWindow( elem ) ) {
+				win = elem;
+			} else if ( elem.nodeType === 9 ) {
+				win = elem.defaultView;
+			}
+
+			if ( val === undefined ) {
+				return win ? win[ prop ] : elem[ method ];
+			}
+
+			if ( win ) {
+				win.scrollTo(
+					!top ? val : win.pageXOffset,
+					top ? val : win.pageYOffset
+				);
+
+			} else {
+				elem[ method ] = val;
+			}
+		}, method, val, arguments.length );
+	};
+} );
+
+// Support: Safari <=7 - 9.1, Chrome <=37 - 49
+// Add the top/left cssHooks using jQuery.fn.position
+// Webkit bug: https://bugs.webkit.org/show_bug.cgi?id=29084
+// Blink bug: https://bugs.chromium.org/p/chromium/issues/detail?id=589347
+// getComputedStyle returns percent when specified for top/left/bottom/right;
+// rather than make the css module depend on the offset module, just check for it here
+jQuery.each( [ "top", "left" ], function( i, prop ) {
+	jQuery.cssHooks[ prop ] = addGetHookIf( support.pixelPosition,
+		function( elem, computed ) {
+			if ( computed ) {
+				computed = curCSS( elem, prop );
+
+				// If curCSS returns percentage, fallback to offset
+				return rnumnonpx.test( computed ) ?
+					jQuery( elem ).position()[ prop ] + "px" :
+					computed;
+			}
+		}
+	);
+} );
+
+
+// Create innerHeight, innerWidth, height, width, outerHeight and outerWidth methods
+jQuery.each( { Height: "height", Width: "width" }, function( name, type ) {
+	jQuery.each( { padding: "inner" + name, content: type, "": "outer" + name },
+		function( defaultExtra, funcName ) {
+
+		// Margin is only for outerHeight, outerWidth
+		jQuery.fn[ funcName ] = function( margin, value ) {
+			var chainable = arguments.length && ( defaultExtra || typeof margin !== "boolean" ),
+				extra = defaultExtra || ( margin === true || value === true ? "margin" : "border" );
+
+			return access( this, function( elem, type, value ) {
+				var doc;
+
+				if ( isWindow( elem ) ) {
+
+					// $( window ).outerWidth/Height return w/h including scrollbars (gh-1729)
+					return funcName.indexOf( "outer" ) === 0 ?
+						elem[ "inner" + name ] :
+						elem.document.documentElement[ "client" + name ];
+				}
+
+				// Get document width or height
+				if ( elem.nodeType === 9 ) {
+					doc = elem.documentElement;
+
+					// Either scroll[Width/Height] or offset[Width/Height] or client[Width/Height],
+					// whichever is greatest
+					return Math.max(
+						elem.body[ "scroll" + name ], doc[ "scroll" + name ],
+						elem.body[ "offset" + name ], doc[ "offset" + name ],
+						doc[ "client" + name ]
+					);
+				}
+
+				return value === undefined ?
+
+					// Get width or height on the element, requesting but not forcing parseFloat
+					jQuery.css( elem, type, extra ) :
+
+					// Set width or height on the element
+					jQuery.style( elem, type, value, extra );
+			}, type, chainable ? margin : undefined, chainable );
+		};
+	} );
+} );
+
+
+jQuery.each( ( "blur focus focusin focusout resize scroll click dblclick " +
+	"mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " +
+	"change select submit keydown keypress keyup contextmenu" ).split( " " ),
+	function( i, name ) {
+
+	// Handle event binding
+	jQuery.fn[ name ] = function( data, fn ) {
+		return arguments.length > 0 ?
+			this.on( name, null, data, fn ) :
+			this.trigger( name );
+	};
+} );
+
+jQuery.fn.extend( {
+	hover: function( fnOver, fnOut ) {
+		return this.mouseenter( fnOver ).mouseleave( fnOut || fnOver );
+	}
+} );
+
+
+
+
+jQuery.fn.extend( {
+
+	bind: function( types, data, fn ) {
+		return this.on( types, null, data, fn );
+	},
+	unbind: function( types, fn ) {
+		return this.off( types, null, fn );
+	},
+
+	delegate: function( selector, types, data, fn ) {
+		return this.on( types, selector, data, fn );
+	},
+	undelegate: function( selector, types, fn ) {
+
+		// ( namespace ) or ( selector, types [, fn] )
+		return arguments.length === 1 ?
+			this.off( selector, "**" ) :
+			this.off( types, selector || "**", fn );
+	}
+} );
+
+// Bind a function to a context, optionally partially applying any
+// arguments.
+// jQuery.proxy is deprecated to promote standards (specifically Function#bind)
+// However, it is not slated for removal any time soon
+jQuery.proxy = function( fn, context ) {
+	var tmp, args, proxy;
+
+	if ( typeof context === "string" ) {
+		tmp = fn[ context ];
+		context = fn;
+		fn = tmp;
+	}
+
+	// Quick check to determine if target is callable, in the spec
+	// this throws a TypeError, but we will just return undefined.
+	if ( !isFunction( fn ) ) {
+		return undefined;
+	}
+
+	// Simulated bind
+	args = slice.call( arguments, 2 );
+	proxy = function() {
+		return fn.apply( context || this, args.concat( slice.call( arguments ) ) );
+	};
+
+	// Set the guid of unique handler to the same of original handler, so it can be removed
+	proxy.guid = fn.guid = fn.guid || jQuery.guid++;
+
+	return proxy;
+};
+
+jQuery.holdReady = function( hold ) {
+	if ( hold ) {
+		jQuery.readyWait++;
+	} else {
+		jQuery.ready( true );
+	}
+};
+jQuery.isArray = Array.isArray;
+jQuery.parseJSON = JSON.parse;
+jQuery.nodeName = nodeName;
+jQuery.isFunction = isFunction;
+jQuery.isWindow = isWindow;
+jQuery.camelCase = camelCase;
+jQuery.type = toType;
+
+jQuery.now = Date.now;
+
+jQuery.isNumeric = function( obj ) {
+
+	// As of jQuery 3.0, isNumeric is limited to
+	// strings and numbers (primitives or objects)
+	// that can be coerced to finite numbers (gh-2662)
+	var type = jQuery.type( obj );
+	return ( type === "number" || type === "string" ) &&
+
+		// parseFloat NaNs numeric-cast false positives ("")
+		// ...but misinterprets leading-number strings, particularly hex literals ("0x...")
+		// subtraction forces infinities to NaN
+		!isNaN( obj - parseFloat( obj ) );
+};
+
+
+
+
+// Register as a named AMD module, since jQuery can be concatenated with other
+// files that may use define, but not via a proper concatenation script that
+// understands anonymous AMD modules. A named AMD is safest and most robust
+// way to register. Lowercase jquery is used because AMD module names are
+// derived from file names, and jQuery is normally delivered in a lowercase
+// file name. Do this after creating the global so that if an AMD module wants
+// to call noConflict to hide this version of jQuery, it will work.
+
+// Note that for maximum portability, libraries that are not jQuery should
+// declare themselves as anonymous modules, and avoid setting a global if an
+// AMD loader is present. jQuery is a special case. For more information, see
+// https://github.com/jrburke/requirejs/wiki/Updating-existing-libraries#wiki-anon
+
+if ( typeof define === "function" && define.amd ) {
+	define( "jquery", [], function() {
+		return jQuery;
+	} );
+}
+
+
+
+
+var
+
+	// Map over jQuery in case of overwrite
+	_jQuery = window.jQuery,
+
+	// Map over the $ in case of overwrite
+	_$ = window.$;
+
+jQuery.noConflict = function( deep ) {
+	if ( window.$ === jQuery ) {
+		window.$ = _$;
+	}
+
+	if ( deep && window.jQuery === jQuery ) {
+		window.jQuery = _jQuery;
+	}
+
+	return jQuery;
+};
+
+// Expose jQuery and $ identifiers, even in AMD
+// (#7102#comment:10, https://github.com/jquery/jquery/pull/557)
+// and CommonJS for browser emulators (#13566)
+if ( !noGlobal ) {
+	window.jQuery = window.$ = jQuery;
+}
+
+
+
+
+return jQuery;
+} );
diff --git a/docs/_static/jquery.js b/docs/_static/jquery.js
index 644d35e274f..a1c07fd803b 100644
--- a/docs/_static/jquery.js
+++ b/docs/_static/jquery.js
@@ -1,4 +1,2 @@
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diff --git a/docs/change_log.html b/docs/change_log.html
index acd75563629..109ddd531f4 100644
--- a/docs/change_log.html
+++ b/docs/change_log.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -2584,7 +2583,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/contributing.html b/docs/contributing.html
index 6782a7037dc..c77edbd42b3 100644
--- a/docs/contributing.html
+++ b/docs/contributing.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -228,7 +227,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/genindex.html b/docs/genindex.html
index c706533a514..57802e1905c 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -14,10 +14,9 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="#" />
     <link rel="search" title="Search" href="search.html" />
-
+ 
 <script type="text/javascript">
   var _gaq = _gaq || [];
   _gaq.push(['_setAccount', 'UA-33990148-1']);
@@ -34,15 +33,15 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li> 
       </ul>
-    </div>
+    </div>  
 
     <div class="document">
       <div class="documentwrapper">
         <div class="bodywrapper">
           <div class="body" role="main">
-
+            
 
 <h1 id="index">Index</h1>
 
@@ -73,7 +72,7 @@ <h1 id="index">Index</h1>
  | <a href="#X"><strong>X</strong></a>
  | <a href="#Y"><strong>Y</strong></a>
  | <a href="#Z"><strong>Z</strong></a>
-
+ 
 </div>
 <h2 id="A">A</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
@@ -682,22 +681,22 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.transformations.site_transformations.html#pymatgen.transformations.site_transformations.ReplaceSiteSpeciesTransformation.apply_transformation">(ReplaceSiteSpeciesTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.RotationTransformation.apply_transformation">(RotationTransformation method)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.apply_transformation">(SQSTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.ScaleToRelaxedTransformation.apply_transformation">(ScaleToRelaxedTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SlabTransformation.apply_transformation">(SlabTransformation method)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.apply_transformation">(SQSTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstituteSurfaceSiteTransformation.apply_transformation">(SubstituteSurfaceSiteTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstitutionPredictorTransformation.apply_transformation">(SubstitutionPredictorTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SubstitutionTransformation.apply_transformation">(SubstitutionTransformation method)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.apply_transformation">(SuperTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SupercellTransformation.apply_transformation">(SupercellTransformation method)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.apply_transformation">(SuperTransformation method)</a>
 </li>
         <li><a href="pymatgen.transformations.site_transformations.html#pymatgen.transformations.site_transformations.TranslateSitesTransformation.apply_transformation">(TranslateSitesTransformation method)</a>
 </li>
@@ -790,8 +789,6 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AnglePlateauNbSetWeight.as_dict">(AnglePlateauNbSetWeight method)</a>
 </li>
         <li><a href="pymatgen.util.provenance.html#pymatgen.util.provenance.Author.as_dict">(Author method)</a>
-</li>
-        <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.BSVasprun.as_dict">(BSVasprun method)</a>
 </li>
         <li><a href="pymatgen.analysis.reaction_calculator.html#pymatgen.analysis.reaction_calculator.BalancedReaction.as_dict">(BalancedReaction method)</a>
 </li>
@@ -803,13 +800,13 @@ <h2 id="A">A</h2>
 </li>
         <li><a href="pymatgen.electronic_structure.boltztrap.html#pymatgen.electronic_structure.boltztrap.BoltztrapRunner.as_dict">(BoltztrapRunner method)</a>
 </li>
-        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CNBiasNbSetWeight.as_dict">(CNBiasNbSetWeight method)</a>
-</li>
-        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CSMFloat.as_dict">(CSMFloat method)</a>
+        <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.BSVasprun.as_dict">(BSVasprun method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.ChemicalEnvironments.as_dict">(ChemicalEnvironments method)</a>
 </li>
         <li><a href="pymatgen.io.cif.html#pymatgen.io.cif.CifParser.as_dict">(CifParser method)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CNBiasNbSetWeight.as_dict">(CNBiasNbSetWeight method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.Cohp.as_dict">(Cohp method)</a>
 </li>
@@ -842,6 +839,8 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html#pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.CoordinationGeometry.NeighborsSetsHints.as_dict">(CoordinationGeometry.NeighborsSetsHints method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.events.html#pymatgen.io.abinit.events.Correction.as_dict">(Correction method)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CSMFloat.as_dict">(CSMFloat method)</a>
 </li>
         <li><a href="pymatgen.analysis.defects.core.html#pymatgen.analysis.defects.core.DefectEntry.as_dict">(DefectEntry method)</a>
 </li>
@@ -900,18 +899,16 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.GaussianToComputedEntryDrone.as_dict">(GaussianToComputedEntryDrone method)</a>
 </li>
         <li><a href="pymatgen.analysis.gb.grain.html#pymatgen.analysis.gb.grain.GrainBoundary.as_dict">(GrainBoundary method)</a>
-</li>
-        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotPDEntry.as_dict">(GrandPotPDEntry method)</a>
 </li>
         <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotentialPhaseDiagram.as_dict">(GrandPotentialPhaseDiagram method)</a>
+</li>
+        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotPDEntry.as_dict">(GrandPotPDEntry method)</a>
 </li>
         <li><a href="pymatgen.util.provenance.html#pymatgen.util.provenance.HistoryNode.as_dict">(HistoryNode method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.HistoryRecord.as_dict">(HistoryRecord method)</a>
 </li>
         <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IMolecule.as_dict">(IMolecule method)</a>
-</li>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.as_dict">(IStructure method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Incar.as_dict">(Incar method)</a>
 </li>
@@ -929,13 +926,13 @@ <h2 id="A">A</h2>
 </li>
         <li><a href="pymatgen.analysis.molecule_matcher.html#pymatgen.analysis.molecule_matcher.IsomorphismMolAtomMapper.as_dict">(IsomorphismMolAtomMapper method)</a>
 </li>
-        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.KSampling.as_dict">(KSampling method)</a>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.as_dict">(IStructure method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.bandstructure.html#pymatgen.electronic_structure.bandstructure.Kpoint.as_dict">(Kpoint method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Kpoints.as_dict">(Kpoints method)</a>
 </li>
-        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.as_dict">(LMTOCtrl method)</a>
+        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.KSampling.as_dict">(KSampling method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.as_dict">(LammpsData method)</a>
 </li>
@@ -948,12 +945,12 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.LightStructureEnvironments.as_dict">(LightStructureEnvironments method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.LightStructureEnvironments.NeighborsSet.as_dict">(LightStructureEnvironments.NeighborsSet method)</a>
+</li>
+        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.as_dict">(LMTOCtrl method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.bandstructure.html#pymatgen.electronic_structure.bandstructure.LobsterBandStructureSymmLine.as_dict">(LobsterBandStructureSymmLine method)</a>
 </li>
         <li><a href="pymatgen.io.lobster.html#pymatgen.io.lobster.Lobsterin.as_dict">(Lobsterin method)</a>
-</li>
-        <li><a href="pymatgen.io.vasp.sets.html#pymatgen.io.vasp.sets.MVLSlabSet.as_dict">(MVLSlabSet method)</a>
 </li>
         <li><a href="pymatgen.core.operations.html#pymatgen.core.operations.MagSymmOp.as_dict">(MagSymmOp method)</a>
 </li>
@@ -967,33 +964,31 @@ <h2 id="A">A</h2>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.MultiWeightsChemenvStrategy.as_dict">(MultiWeightsChemenvStrategy method)</a>
 </li>
-        <li><a href="pymatgen.analysis.transition_state.html#pymatgen.analysis.transition_state.NEBAnalysis.as_dict">(NEBAnalysis method)</a>
+        <li><a href="pymatgen.io.vasp.sets.html#pymatgen.io.vasp.sets.MVLSlabSet.as_dict">(MVLSlabSet method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.NbSetWeight.as_dict">(NbSetWeight method)</a>
+</li>
+        <li><a href="pymatgen.analysis.transition_state.html#pymatgen.analysis.transition_state.NEBAnalysis.as_dict">(NEBAnalysis method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.NodeResults.as_dict">(NodeResults method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.NormalizedAngleDistanceNbSetWeight.as_dict">(NormalizedAngleDistanceNbSetWeight method)</a>
 </li>
         <li><a href="pymatgen.analysis.energy_models.html#pymatgen.analysis.energy_models.NsitesModel.as_dict">(NsitesModel method)</a>
+</li>
+        <li><a href="pymatgen.io.fiesta.html#pymatgen.io.fiesta.Nwchem2Fiesta.as_dict">(Nwchem2Fiesta method)</a>
 </li>
         <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.as_dict">(NwInput method)</a>
 </li>
         <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwTask.as_dict">(NwTask method)</a>
-</li>
-        <li><a href="pymatgen.io.fiesta.html#pymatgen.io.fiesta.Nwchem2Fiesta.as_dict">(Nwchem2Fiesta method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Oszicar.as_dict">(Oszicar method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Outcar.as_dict">(Outcar method)</a>
-</li>
-        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.PDEntry.as_dict">(PDEntry method)</a>
-</li>
-        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.PPModel.as_dict">(PPModel method)</a>
-</li>
-        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.as_dict">(PWInput method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.tasks.html#pymatgen.io.abinit.tasks.ParalHints.as_dict">(ParalHints method)</a>
+</li>
+        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.PDEntry.as_dict">(PDEntry method)</a>
 </li>
         <li><a href="pymatgen.core.sites.html#pymatgen.core.sites.PeriodicSite.as_dict">(PeriodicSite method)</a>
 </li>
@@ -1012,10 +1007,14 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.analysis.pourbaix_diagram.html#pymatgen.analysis.pourbaix_diagram.PourbaixDiagram.as_dict">(PourbaixDiagram method)</a>
 </li>
         <li><a href="pymatgen.analysis.pourbaix_diagram.html#pymatgen.analysis.pourbaix_diagram.PourbaixEntry.as_dict">(PourbaixEntry method)</a>
+</li>
+        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.PPModel.as_dict">(PPModel method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.pseudos.html#pymatgen.io.abinit.pseudos.Pseudo.as_dict">(Pseudo method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.pseudos.html#pymatgen.io.abinit.pseudos.PseudoTable.as_dict">(PseudoTable method)</a>
+</li>
+        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.as_dict">(PWInput method)</a>
 </li>
         <li><a href="pymatgen.io.qchem.outputs.html#pymatgen.io.qchem.outputs.QCOutput.as_dict">(QCOutput method)</a>
 </li>
@@ -1030,10 +1029,10 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html#pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.SeparationPlane.as_dict">(SeparationPlane property)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.SimpleAbundanceChemenvStrategy.as_dict">(SimpleAbundanceChemenvStrategy method)</a>
-</li>
-        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.SimpleVaspToComputedEntryDrone.as_dict">(SimpleVaspToComputedEntryDrone method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.SimplestChemenvStrategy.as_dict">(SimplestChemenvStrategy method)</a>
+</li>
+        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.SimpleVaspToComputedEntryDrone.as_dict">(SimpleVaspToComputedEntryDrone method)</a>
 </li>
         <li><a href="pymatgen.core.sites.html#pymatgen.core.sites.Site.as_dict">(Site method)</a>
 </li>
@@ -1062,10 +1061,10 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.util.provenance.html#pymatgen.util.provenance.StructureNL.as_dict">(StructureNL method)</a>
 </li>
         <li><a href="pymatgen.analysis.structure_prediction.substitutor.html#pymatgen.analysis.structure_prediction.substitutor.Substitutor.as_dict">(Substitutor method)</a>
-</li>
-        <li><a href="pymatgen.core.operations.html#pymatgen.core.operations.SymmOp.as_dict">(SymmOp method)</a>
 </li>
         <li><a href="pymatgen.analysis.energy_models.html#pymatgen.analysis.energy_models.SymmetryModel.as_dict">(SymmetryModel method)</a>
+</li>
+        <li><a href="pymatgen.core.operations.html#pymatgen.core.operations.SymmOp.as_dict">(SymmOp method)</a>
 </li>
         <li><a href="pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.Tags.as_dict">(Tags method)</a>
 </li>
@@ -1090,10 +1089,10 @@ <h2 id="A">A</h2>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.VaspInput.as_dict">(VaspInput method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.sets.html#pymatgen.io.vasp.sets.VaspInputSet.as_dict">(VaspInputSet method)</a>
-</li>
-        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.VaspToComputedEntryDrone.as_dict">(VaspToComputedEntryDrone method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Vasprun.as_dict">(Vasprun method)</a>
+</li>
+        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.VaspToComputedEntryDrone.as_dict">(VaspToComputedEntryDrone method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.WeightedNbSetChemenvStrategy.as_dict">(WeightedNbSetChemenvStrategy method)</a>
 </li>
@@ -1648,10 +1647,10 @@ <h2 id="C">C</h2>
         <li><a href="pymatgen.analysis.defects.core.html#pymatgen.analysis.defects.core.DefectEntry.charge">(DefectEntry property)</a>
 </li>
         <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IMolecule.charge">(IMolecule property)</a>
-</li>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.charge">(IStructure property)</a>
 </li>
         <li><a href="pymatgen.core.ion.html#pymatgen.core.ion.Ion.charge">(Ion property)</a>
+</li>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.charge">(IStructure property)</a>
 </li>
         <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.SiteCollection.charge">(SiteCollection property)</a>
 </li>
@@ -2120,10 +2119,10 @@ <h2 id="C">C</h2>
         <li><a href="pymatgen.analysis.defects.core.html#pymatgen.analysis.defects.core.DefectEntry.copy">(DefectEntry method)</a>
 </li>
         <li><a href="pymatgen.analysis.gb.grain.html#pymatgen.analysis.gb.grain.GrainBoundary.copy">(GrainBoundary method)</a>
-</li>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.copy">(IStructure method)</a>
 </li>
         <li><a href="pymatgen.analysis.interface.html#pymatgen.analysis.interface.Interface.copy">(Interface method)</a>
+</li>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.copy">(IStructure method)</a>
 </li>
         <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.copy">(Lattice method)</a>
 </li>
@@ -3218,7 +3217,7 @@ <h2 id="F">F</h2>
 </li>
       <li><a href="pymatgen.electronic_structure.boltztrap2.html#pymatgen.electronic_structure.boltztrap2.BztTransportProperties.find_mu_doping">find_mu_doping() (BztTransportProperties method)</a>
 </li>
-      <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.find_neighbors">find_neighbors() (in module pymatgen.core.structure)</a>
+      <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.find_neighbors">find_neighbors() (in module pymatgen.core.lattice)</a>
 </li>
       <li><a href="pymatgen.io.abinit.tasks.html#pymatgen.io.abinit.tasks.AbinitTask.find_optconf">find_optconf() (AbinitTask method)</a>
 </li>
@@ -3480,12 +3479,10 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.electronic_structure.bandstructure.html#pymatgen.electronic_structure.bandstructure.BandStructureSymmLine.from_dict">(BandStructureSymmLine class method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.boltztrap.html#pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.from_dict">(BoltztrapAnalyzer static method)</a>
-</li>
-        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CNBiasNbSetWeight.from_dict">(CNBiasNbSetWeight class method)</a>
-</li>
-        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CSMFloat.from_dict">(CSMFloat class method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.ChemicalEnvironments.from_dict">(ChemicalEnvironments class method)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CNBiasNbSetWeight.from_dict">(CNBiasNbSetWeight class method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.cohp.html#pymatgen.electronic_structure.cohp.Cohp.from_dict">(Cohp class method)</a>
 </li>
@@ -3518,6 +3515,8 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html#pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.CoordinationGeometry.NeighborsSetsHints.from_dict">(CoordinationGeometry.NeighborsSetsHints class method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.events.html#pymatgen.io.abinit.events.Correction.from_dict">(Correction class method)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.CSMFloat.from_dict">(CSMFloat class method)</a>
 </li>
         <li><a href="pymatgen.analysis.defects.core.html#pymatgen.analysis.defects.core.DefectEntry.from_dict">(DefectEntry class method)</a>
 </li>
@@ -3570,18 +3569,16 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.GaussianToComputedEntryDrone.from_dict">(GaussianToComputedEntryDrone class method)</a>
 </li>
         <li><a href="pymatgen.analysis.gb.grain.html#pymatgen.analysis.gb.grain.GrainBoundary.from_dict">(GrainBoundary class method)</a>
-</li>
-        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotPDEntry.from_dict">(GrandPotPDEntry class method)</a>
 </li>
         <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotentialPhaseDiagram.from_dict">(GrandPotentialPhaseDiagram class method)</a>
+</li>
+        <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.GrandPotPDEntry.from_dict">(GrandPotPDEntry class method)</a>
 </li>
         <li><a href="pymatgen.util.provenance.html#pymatgen.util.provenance.HistoryNode.from_dict">(HistoryNode static method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.HistoryRecord.from_dict">(HistoryRecord class method)</a>
 </li>
         <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IMolecule.from_dict">(IMolecule class method)</a>
-</li>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.from_dict">(IStructure class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Incar.from_dict">(Incar class method)</a>
 </li>
@@ -3597,11 +3594,11 @@ <h2 id="F">F</h2>
 </li>
         <li><a href="pymatgen.analysis.molecule_matcher.html#pymatgen.analysis.molecule_matcher.IsomorphismMolAtomMapper.from_dict">(IsomorphismMolAtomMapper class method)</a>
 </li>
-        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.KSampling.from_dict">(KSampling class method)</a>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.from_dict">(IStructure class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Kpoints.from_dict">(Kpoints class method)</a>
 </li>
-        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.from_dict">(LMTOCtrl class method)</a>
+        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.KSampling.from_dict">(KSampling class method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.from_dict">(LammpsData class method)</a>
 </li>
@@ -3612,6 +3609,8 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.LightStructureEnvironments.from_dict">(LightStructureEnvironments class method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.structure_environments.html#pymatgen.analysis.chemenv.coordination_environments.structure_environments.LightStructureEnvironments.NeighborsSet.from_dict">(LightStructureEnvironments.NeighborsSet class method)</a>
+</li>
+        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.from_dict">(LMTOCtrl class method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.bandstructure.html#pymatgen.electronic_structure.bandstructure.LobsterBandStructureSymmLine.from_dict">(LobsterBandStructureSymmLine class method)</a>
 </li>
@@ -3634,20 +3633,16 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.NodeResults.from_dict">(NodeResults class method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.NormalizedAngleDistanceNbSetWeight.from_dict">(NormalizedAngleDistanceNbSetWeight class method)</a>
+</li>
+        <li><a href="pymatgen.io.fiesta.html#pymatgen.io.fiesta.Nwchem2Fiesta.from_dict">(Nwchem2Fiesta class method)</a>
 </li>
         <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.from_dict">(NwInput class method)</a>
 </li>
         <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwTask.from_dict">(NwTask class method)</a>
 </li>
-        <li><a href="pymatgen.io.fiesta.html#pymatgen.io.fiesta.Nwchem2Fiesta.from_dict">(Nwchem2Fiesta class method)</a>
+        <li><a href="pymatgen.io.abinit.tasks.html#pymatgen.io.abinit.tasks.ParalHints.from_dict">(ParalHints class method)</a>
 </li>
         <li><a href="pymatgen.analysis.phase_diagram.html#pymatgen.analysis.phase_diagram.PDEntry.from_dict">(PDEntry class method)</a>
-</li>
-        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.PPModel.from_dict">(PPModel static method)</a>
-</li>
-        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_dict">(PWInput class method)</a>
-</li>
-        <li><a href="pymatgen.io.abinit.tasks.html#pymatgen.io.abinit.tasks.ParalHints.from_dict">(ParalHints class method)</a>
 </li>
         <li><a href="pymatgen.core.sites.html#pymatgen.core.sites.PeriodicSite.from_dict">(PeriodicSite class method)</a>
 </li>
@@ -3666,10 +3661,14 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.analysis.pourbaix_diagram.html#pymatgen.analysis.pourbaix_diagram.PourbaixDiagram.from_dict">(PourbaixDiagram class method)</a>
 </li>
         <li><a href="pymatgen.analysis.pourbaix_diagram.html#pymatgen.analysis.pourbaix_diagram.PourbaixEntry.from_dict">(PourbaixEntry class method)</a>
+</li>
+        <li><a href="pymatgen.io.abinit.abiobjects.html#pymatgen.io.abinit.abiobjects.PPModel.from_dict">(PPModel static method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.pseudos.html#pymatgen.io.abinit.pseudos.Pseudo.from_dict">(Pseudo class method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.pseudos.html#pymatgen.io.abinit.pseudos.PseudoTable.from_dict">(PseudoTable class method)</a>
+</li>
+        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_dict">(PWInput class method)</a>
 </li>
         <li><a href="pymatgen.analysis.reaction_calculator.html#pymatgen.analysis.reaction_calculator.Reaction.from_dict">(Reaction class method)</a>
 </li>
@@ -3680,10 +3679,10 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html#pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.SeparationPlane.from_dict">(SeparationPlane class method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.SimpleAbundanceChemenvStrategy.from_dict">(SimpleAbundanceChemenvStrategy class method)</a>
-</li>
-        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.SimpleVaspToComputedEntryDrone.from_dict">(SimpleVaspToComputedEntryDrone class method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.SimplestChemenvStrategy.from_dict">(SimplestChemenvStrategy class method)</a>
+</li>
+        <li><a href="pymatgen.apps.borg.hive.html#pymatgen.apps.borg.hive.SimpleVaspToComputedEntryDrone.from_dict">(SimpleVaspToComputedEntryDrone class method)</a>
 </li>
         <li><a href="pymatgen.core.sites.html#pymatgen.core.sites.Site.from_dict">(Site class method)</a>
 </li>
@@ -3790,26 +3789,24 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.Header.from_file">(Header static method)</a>
 </li>
         <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IMolecule.from_file">(IMolecule class method)</a>
-</li>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.from_file">(IStructure class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Incar.from_file">(Incar static method)</a>
+</li>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.from_file">(IStructure class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Kpoints.from_file">(Kpoints static method)</a>
+</li>
+        <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.from_file">(LammpsData class method)</a>
 </li>
         <li><a href="pymatgen.io.feff.outputs.html#pymatgen.io.feff.outputs.LDos.from_file">(LDos static method)</a>
 </li>
         <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.from_file">(LMTOCtrl class method)</a>
-</li>
-        <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.from_file">(LammpsData class method)</a>
 </li>
         <li><a href="pymatgen.io.lobster.html#pymatgen.io.lobster.Lobsterin.from_file">(Lobsterin class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Locpot.from_file">(Locpot static method)</a>
 </li>
         <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.from_file">(NwInput class method)</a>
-</li>
-        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_file">(PWInput static method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Poscar.from_file">(Poscar static method)</a>
 </li>
@@ -3820,6 +3817,8 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.Product.from_file">(Product class method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.pseudos.html#pymatgen.io.abinit.pseudos.Pseudo.from_file">(Pseudo static method)</a>
+</li>
+        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_file">(PWInput static method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.launcher.html#pymatgen.io.abinit.launcher.PyFlowScheduler.from_file">(PyFlowScheduler class method)</a>
 </li>
@@ -3838,12 +3837,12 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.core.trajectory.html#pymatgen.core.trajectory.Trajectory.from_file">(Trajectory class method)</a>
 </li>
         <li><a href="pymatgen.electronic_structure.boltztrap2.html#pymatgen.electronic_structure.boltztrap2.VasprunLoader.from_file">(VasprunLoader method)</a>
-</li>
-        <li><a href="pymatgen.io.xyz.html#pymatgen.io.xyz.XYZ.from_file">(XYZ static method)</a>
 </li>
         <li><a href="pymatgen.io.feff.outputs.html#pymatgen.io.feff.outputs.Xmu.from_file">(Xmu static method)</a>
 </li>
         <li><a href="pymatgen.io.xr.html#pymatgen.io.xr.Xr.from_file">(Xr static method)</a>
+</li>
+        <li><a href="pymatgen.io.xyz.html#pymatgen.io.xyz.XYZ.from_file">(XYZ static method)</a>
 </li>
         <li><a href="pymatgen.io.zeopp.html#pymatgen.io.zeopp.ZeoCssr.from_file">(ZeoCssr static method)</a>
 </li>
@@ -4038,16 +4037,16 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.io.abinit.qjobs.html#pymatgen.io.abinit.qjobs.JobStatus.from_string">(JobStatus class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Kpoints.from_string">(Kpoints static method)</a>
-</li>
-        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.from_string">(LMTOCtrl class method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.outputs.html#pymatgen.io.lammps.outputs.LammpsDump.from_string">(LammpsDump class method)</a>
 </li>
-        <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.from_string">(NwInput class method)</a>
+        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.from_string">(LMTOCtrl class method)</a>
 </li>
-        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_string">(PWInput static method)</a>
+        <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.from_string">(NwInput class method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Poscar.from_string">(Poscar static method)</a>
+</li>
+        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.from_string">(PWInput static method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.launcher.html#pymatgen.io.abinit.launcher.PyFlowScheduler.from_string">(PyFlowScheduler class method)</a>
 </li>
@@ -4058,12 +4057,12 @@ <h2 id="F">F</h2>
         <li><a href="pymatgen.io.abinit.nodes.html#pymatgen.io.abinit.nodes.Status.from_string">(Status class method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.tasks.html#pymatgen.io.abinit.tasks.TaskManager.from_string">(TaskManager class method)</a>
+</li>
+        <li><a href="pymatgen.io.xr.html#pymatgen.io.xr.Xr.from_string">(Xr static method)</a>
 </li>
         <li><a href="pymatgen.io.xcrysden.html#pymatgen.io.xcrysden.XSF.from_string">(XSF class method)</a>
 </li>
         <li><a href="pymatgen.io.xyz.html#pymatgen.io.xyz.XYZ.from_string">(XYZ static method)</a>
-</li>
-        <li><a href="pymatgen.io.xr.html#pymatgen.io.xr.Xr.from_string">(Xr static method)</a>
 </li>
         <li><a href="pymatgen.io.zeopp.html#pymatgen.io.zeopp.ZeoCssr.from_string">(ZeoCssr static method)</a>
 </li>
@@ -5231,6 +5230,10 @@ <h2 id="G">G</h2>
       <li><a href="pymatgen.symmetry.analyzer.html#pymatgen.symmetry.analyzer.PointGroupAnalyzer.get_pointgroup">get_pointgroup() (PointGroupAnalyzer method)</a>
 </li>
       <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.get_points_in_sphere">get_points_in_sphere() (Lattice method)</a>
+</li>
+      <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.get_points_in_sphere_old">get_points_in_sphere_old() (Lattice method)</a>
+</li>
+      <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.get_points_in_spheres">get_points_in_spheres() (in module pymatgen.core.lattice)</a>
 </li>
       <li><a href="pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.Polarization.get_polarization_change">get_polarization_change() (Polarization method)</a>
 </li>
@@ -5481,9 +5484,9 @@ <h2 id="G">G</h2>
       <li><a href="pymatgen.analysis.gb.grain.html#pymatgen.analysis.gb.grain.GrainBoundary.get_sorted_structure">get_sorted_structure() (GrainBoundary method)</a>
 
       <ul>
-        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.get_sorted_structure">(IStructure method)</a>
-</li>
         <li><a href="pymatgen.analysis.interface.html#pymatgen.analysis.interface.Interface.get_sorted_structure">(Interface method)</a>
+</li>
+        <li><a href="pymatgen.core.structure.html#pymatgen.core.structure.IStructure.get_sorted_structure">(IStructure method)</a>
 </li>
         <li><a href="pymatgen.core.surface.html#pymatgen.core.surface.Slab.get_sorted_structure">(Slab method)</a>
 </li>
@@ -5538,12 +5541,12 @@ <h2 id="G">G</h2>
 
       <ul>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Incar.get_string">(Incar method)</a>
-</li>
-        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.get_string">(LMTOCtrl method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsBox.get_string">(LammpsBox method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.get_string">(LammpsData method)</a>
+</li>
+        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.get_string">(LMTOCtrl method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Poscar.get_string">(Poscar method)</a>
 </li>
@@ -5645,8 +5648,6 @@ <h2 id="G">G</h2>
       <li><a href="pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html#pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.AllCoordinationGeometries.get_symbol_name_mapping">get_symbol_name_mapping() (AllCoordinationGeometries method)</a>
 </li>
       <li><a href="pymatgen.electronic_structure.boltztrap.html#pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.get_symm_bands">get_symm_bands() (BoltztrapAnalyzer method)</a>
-</li>
-      <li><a href="pymatgen.symmetry.groups.html#pymatgen.symmetry.groups._get_symm_data">_get_symm_data() (in module pymatgen.symmetry.groups)</a>
 </li>
       <li><a href="pymatgen.core.surface.html#pymatgen.core.surface.Slab.get_symmetric_site">get_symmetric_site() (Slab method)</a>
 </li>
@@ -6782,22 +6783,22 @@ <h2 id="I">I</h2>
         <li><a href="pymatgen.transformations.site_transformations.html#pymatgen.transformations.site_transformations.ReplaceSiteSpeciesTransformation.inverse">(ReplaceSiteSpeciesTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.RotationTransformation.inverse">(RotationTransformation property)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.inverse">(SQSTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.ScaleToRelaxedTransformation.inverse">(ScaleToRelaxedTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SlabTransformation.inverse">(SlabTransformation property)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.inverse">(SQSTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstituteSurfaceSiteTransformation.inverse">(SubstituteSurfaceSiteTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstitutionPredictorTransformation.inverse">(SubstitutionPredictorTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SubstitutionTransformation.inverse">(SubstitutionTransformation property)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.inverse">(SuperTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SupercellTransformation.inverse">(SupercellTransformation property)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.inverse">(SuperTransformation property)</a>
 </li>
         <li><a href="pymatgen.core.operations.html#pymatgen.core.operations.SymmOp.inverse">(SymmOp property)</a>
 </li>
@@ -7038,22 +7039,22 @@ <h2 id="I">I</h2>
         <li><a href="pymatgen.transformations.site_transformations.html#pymatgen.transformations.site_transformations.ReplaceSiteSpeciesTransformation.is_one_to_many">(ReplaceSiteSpeciesTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.RotationTransformation.is_one_to_many">(RotationTransformation property)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.is_one_to_many">(SQSTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.ScaleToRelaxedTransformation.is_one_to_many">(ScaleToRelaxedTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SlabTransformation.is_one_to_many">(SlabTransformation property)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SQSTransformation.is_one_to_many">(SQSTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstituteSurfaceSiteTransformation.is_one_to_many">(SubstituteSurfaceSiteTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SubstitutionPredictorTransformation.is_one_to_many">(SubstitutionPredictorTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SubstitutionTransformation.is_one_to_many">(SubstitutionTransformation property)</a>
-</li>
-        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.is_one_to_many">(SuperTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.standard_transformations.html#pymatgen.transformations.standard_transformations.SupercellTransformation.is_one_to_many">(SupercellTransformation property)</a>
+</li>
+        <li><a href="pymatgen.transformations.advanced_transformations.html#pymatgen.transformations.advanced_transformations.SuperTransformation.is_one_to_many">(SuperTransformation property)</a>
 </li>
         <li><a href="pymatgen.transformations.site_transformations.html#pymatgen.transformations.site_transformations.TranslateSitesTransformation.is_one_to_many">(TranslateSitesTransformation property)</a>
 </li>
@@ -8857,6 +8858,8 @@ <h2 id="P">P</h2>
       <li><a href="pymatgen.io.abinit.abitimer.html#pymatgen.io.abinit.abitimer.ParallelEfficiency">ParallelEfficiency (class in pymatgen.io.abinit.abitimer)</a>
 </li>
       <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Vasprun.parameters">parameters (Vasprun attribute)</a>
+</li>
+      <li><a href="pymatgen.core.lattice.html#pymatgen.core.lattice.Lattice.parameters">parameters() (Lattice property)</a>
 </li>
       <li><a href="pymatgen.io.shengbte.html#pymatgen.io.shengbte.Control.params_keys">params_keys (Control attribute)</a>
 </li>
@@ -9106,6 +9109,8 @@ <h2 id="P">P</h2>
         <li><a href="pymatgen.analysis.eos.html#pymatgen.analysis.eos.EOSBase.plot">(EOSBase method)</a>
 </li>
         <li><a href="pymatgen.analysis.defects.corrections.html#pymatgen.analysis.defects.corrections.FreysoldtCorrection.plot">(FreysoldtCorrection method)</a>
+</li>
+        <li><a href="pymatgen.cli.pmg_plot.html#pymatgen.cli.pmg_plot.plot">(in module pymatgen.cli.pmg_plot)</a>
 </li>
         <li><a href="pymatgen.analysis.interface_reactions.html#pymatgen.analysis.interface_reactions.InterfacialReactivity.plot">(InterfacialReactivity method)</a>
 </li>
@@ -9116,8 +9121,6 @@ <h2 id="P">P</h2>
         <li><a href="pymatgen.io.abinit.abiinspect.html#pymatgen.io.abinit.abiinspect.ScfCycle.plot">(ScfCycle method)</a>
 </li>
         <li><a href="pymatgen.io.abinit.utils.html#pymatgen.io.abinit.utils.SparseHistogram.plot">(SparseHistogram method)</a>
-</li>
-        <li><a href="pymatgen.cli.pmg_plot.html#pymatgen.cli.pmg_plot.plot">(in module pymatgen.cli.pmg_plot)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.io.abinit.abitimer.html#pymatgen.io.abinit.abitimer.AbinitTimerParser.plot_all">plot_all() (AbinitTimerParser method)</a>
@@ -9365,25 +9368,25 @@ <h2 id="P">P</h2>
       <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.CSMFiniteRatioFunction.power2_decreasing_exp">power2_decreasing_exp() (CSMFiniteRatioFunction method)</a>
 
       <ul>
-        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_decreasing_exp">(RatioFunction method)</a>
-</li>
         <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.power2_decreasing_exp">(in module pymatgen.analysis.chemenv.utils.math_utils)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_decreasing_exp">(RatioFunction method)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.CSMInfiniteRatioFunction.power2_inverse_decreasing">power2_inverse_decreasing() (CSMInfiniteRatioFunction method)</a>
 
       <ul>
-        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_inverse_decreasing">(RatioFunction method)</a>
-</li>
         <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.power2_inverse_decreasing">(in module pymatgen.analysis.chemenv.utils.math_utils)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_inverse_decreasing">(RatioFunction method)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.CSMInfiniteRatioFunction.power2_inverse_power2_decreasing">power2_inverse_power2_decreasing() (CSMInfiniteRatioFunction method)</a>
 
       <ul>
-        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_inverse_power2_decreasing">(RatioFunction method)</a>
-</li>
         <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.power2_inverse_power2_decreasing">(in module pymatgen.analysis.chemenv.utils.math_utils)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.power2_inverse_power2_decreasing">(RatioFunction method)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.power2_inverse_powern_decreasing">power2_inverse_powern_decreasing() (in module pymatgen.analysis.chemenv.utils.math_utils)</a>
@@ -11214,10 +11217,10 @@ <h2 id="S">S</h2>
 
       <ul>
         <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.DeltaCSMRatioFunction.smootherstep">(DeltaCSMRatioFunction method)</a>
-</li>
-        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.smootherstep">(RatioFunction method)</a>
 </li>
         <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.smootherstep">(in module pymatgen.analysis.chemenv.utils.math_utils)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.smootherstep">(RatioFunction method)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.analysis.ferroelectricity.polarization.html#pymatgen.analysis.ferroelectricity.polarization.EnergyTrend.smoothness">smoothness() (EnergyTrend method)</a>
@@ -11229,9 +11232,9 @@ <h2 id="S">S</h2>
       <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.CSMFiniteRatioFunction.smoothstep">smoothstep() (CSMFiniteRatioFunction method)</a>
 
       <ul>
-        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.smoothstep">(RatioFunction method)</a>
-</li>
         <li><a href="pymatgen.analysis.chemenv.utils.math_utils.html#pymatgen.analysis.chemenv.utils.math_utils.smoothstep">(in module pymatgen.analysis.chemenv.utils.math_utils)</a>
+</li>
+        <li><a href="pymatgen.analysis.chemenv.utils.func_utils.html#pymatgen.analysis.chemenv.utils.func_utils.RatioFunction.smoothstep">(RatioFunction method)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.io.qchem.inputs.html#pymatgen.io.qchem.inputs.QCInput.smx_template">smx_template() (QCInput static method)</a>
@@ -11552,10 +11555,10 @@ <h2 id="S">S</h2>
 
       <ul>
         <li><a href="pymatgen.io.gaussian.html#pymatgen.io.gaussian.GaussianOutput.structures">(GaussianOutput attribute)</a>
-</li>
-        <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Xdatcar.structures">(Xdatcar attribute)</a>
 </li>
         <li><a href="pymatgen.command_line.enumlib_caller.html#pymatgen.command_line.enumlib_caller.structures">(in module pymatgen.command_line.enumlib_caller)</a>
+</li>
+        <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Xdatcar.structures">(Xdatcar attribute)</a>
 </li>
       </ul></li>
       <li><a href="pymatgen.alchemy.materials.html#pymatgen.alchemy.materials.TransformedStructure.structures">structures() (TransformedStructure property)</a>
@@ -12620,14 +12623,12 @@ <h2 id="W">W</h2>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Incar.write_file">(Incar method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.Kpoints.write_file">(Kpoints method)</a>
-</li>
-        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.write_file">(LMTOCtrl method)</a>
 </li>
         <li><a href="pymatgen.io.lammps.data.html#pymatgen.io.lammps.data.LammpsData.write_file">(LammpsData method)</a>
 </li>
-        <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.write_file">(NwInput method)</a>
+        <li><a href="pymatgen.io.lmto.html#pymatgen.io.lmto.LMTOCtrl.write_file">(LMTOCtrl method)</a>
 </li>
-        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.write_file">(PWInput method)</a>
+        <li><a href="pymatgen.io.nwchem.html#pymatgen.io.nwchem.NwInput.write_file">(NwInput method)</a>
 </li>
         <li><a href="pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.Paths.write_file">(Paths method)</a>
 </li>
@@ -12638,18 +12639,20 @@ <h2 id="W">W</h2>
         <li><a href="pymatgen.io.vasp.inputs.html#pymatgen.io.vasp.inputs.PotcarSingle.write_file">(PotcarSingle method)</a>
 </li>
         <li><a href="pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.Potential.write_file">(Potential method)</a>
+</li>
+        <li><a href="pymatgen.io.pwscf.html#pymatgen.io.pwscf.PWInput.write_file">(PWInput method)</a>
 </li>
         <li><a href="pymatgen.io.qchem.inputs.html#pymatgen.io.qchem.inputs.QCInput.write_file">(QCInput method)</a>
 </li>
         <li><a href="pymatgen.io.feff.inputs.html#pymatgen.io.feff.inputs.Tags.write_file">(Tags method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.VolumetricData.write_file">(VolumetricData method)</a>
-</li>
-        <li><a href="pymatgen.io.xyz.html#pymatgen.io.xyz.XYZ.write_file">(XYZ method)</a>
 </li>
         <li><a href="pymatgen.io.vasp.outputs.html#pymatgen.io.vasp.outputs.Xdatcar.write_file">(Xdatcar method)</a>
 </li>
         <li><a href="pymatgen.io.xr.html#pymatgen.io.xr.Xr.write_file">(Xr method)</a>
+</li>
+        <li><a href="pymatgen.io.xyz.html#pymatgen.io.xyz.XYZ.write_file">(XYZ method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -12929,13 +12932,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li> 
       </ul>
     </div>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/index.html b/docs/index.html
index 4b648bc3937..1d5af9afdef 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Requirements" href="installation.html" />
@@ -51,7 +50,7 @@ <h3>Navigation</h3>
 <h1>Introduction<a class="headerlink" href="#introduction" title="Permalink to this headline">¶</a></h1>
 <img alt="https://circleci.com/gh/materialsproject/pymatgen.svg?style=shield&amp;circle-token=:circle-token" src="https://circleci.com/gh/materialsproject/pymatgen.svg?style=shield&amp;circle-token=:circle-token" />
 <img alt="https://ci.appveyor.com/api/projects/status/akdyke5jxg6gps45?svg=true" src="https://ci.appveyor.com/api/projects/status/akdyke5jxg6gps45?svg=true" />
-<img alt="https://anaconda.org/matsci/pymatgen/badges/downloads.svg" src="https://anaconda.org/matsci/pymatgen/badges/downloads.svg" /><img alt="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master" src="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master" />
+<img alt="https://anaconda.org/conda-forge/pymatgen/badges/downloads.svg" src="https://anaconda.org/conda-forge/pymatgen/badges/downloads.svg" /><img alt="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master" src="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master" />
 <p>Pymatgen (Python Materials Genomics) is a robust, open-source Python library
 for materials analysis. These are some of the main features:</p>
 <ol class="arabic simple">
@@ -176,12 +175,10 @@ <h1>Getting pymatgen<a class="headerlink" href="#getting-pymatgen" title="Permal
 <div class="section" id="via-conda-recommended">
 <h2>Via conda (recommended)<a class="headerlink" href="#via-conda-recommended" title="Permalink to this headline">¶</a></h2>
 <p>If you are absolutely new to Python and/or are using Windows, the easiest
-installation process is using <a class="reference external" href="http://conda.pydata.org">conda</a>. The
-<a class="reference external" href="http://www.materialsvirtuallab.org">Materials Virtual Lab</a> has started <a class="reference external" href="http://materials.sh">materials.sh</a>,
-a community initiative to build a comprehensive collection of materials science
-software, where pymatgen is available. If you already have conda installed,
-pymatgen can be installed from the <a class="reference external" href="https://anaconda.org/matsci">matsci channel on Anaconda cloud</a> using the following one line command:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">conda</span> <span class="n">install</span> <span class="o">--</span><span class="n">channel</span> <span class="n">matsci</span> <span class="n">pymatgen</span>
+installation process is using <a class="reference external" href="http://conda.pydata.org">conda</a>. If you
+already have conda installed, pymatgen can be installed from the <a class="reference external" href="https://anaconda.org/conda-forge">conda-forge
+channel</a> using the following command:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">conda</span> <span class="n">install</span> <span class="o">--</span><span class="n">channel</span> <span class="n">conda</span><span class="o">-</span><span class="n">forge</span> <span class="n">pymatgen</span>
 </pre></div>
 </div>
 <p>Pymatgen is under active development, and new features are added regularly. To
@@ -288,7 +285,7 @@ <h2>Shared cluster installation<a class="headerlink" href="#shared-cluster-insta
 
 # Install numpy and other pydata stack packages via conda.
 conda install --yes numpy scipy pandas
-conda install --yes --channel matsci pymatgen
+conda install --yes --channel conda-forge pymatgen
 </pre></div>
 </div>
 </div>
@@ -733,7 +730,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/installation.html b/docs/installation.html
index a856322b4c4..5cd27a5df0a 100644
--- a/docs/installation.html
+++ b/docs/installation.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Overview" href="usage.html" />
@@ -600,7 +599,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/latest_changes.html b/docs/latest_changes.html
index 490e72ca521..f4b40bd993e 100644
--- a/docs/latest_changes.html
+++ b/docs/latest_changes.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -103,7 +102,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/modules.html b/docs/modules.html
index 0b533083648..e3be77b9ee3 100644
--- a/docs/modules.html
+++ b/docs/modules.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -645,7 +644,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/objects.inv b/docs/objects.inv
index e221039ed76d157f045767741ea82370355a126c..62cc8641045a0d40036b05b1c32ddfe391e0e939 100644
GIT binary patch
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diff --git a/docs/py-modindex.html b/docs/py-modindex.html
index 0d38fb2f226..99176124a0d 100644
--- a/docs/py-modindex.html
+++ b/docs/py-modindex.html
@@ -13,7 +13,6 @@
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@@ -1394,7 +1393,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 243ed733986..2a3a5d5a89b 100644
--- a/docs/pymatgen.alchemy.filters.html
+++ b/docs/pymatgen.alchemy.filters.html
@@ -13,7 +13,6 @@
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@@ -311,7 +310,7 @@ <h3>Navigation</h3>
 
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index 7f88f1fa109..73025bd8e46 100644
--- a/docs/pymatgen.alchemy.html
+++ b/docs/pymatgen.alchemy.html
@@ -13,7 +13,6 @@
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@@ -118,7 +117,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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diff --git a/docs/pymatgen.alchemy.materials.html b/docs/pymatgen.alchemy.materials.html
index e68ea1cde5f..26cbf6214fc 100644
--- a/docs/pymatgen.alchemy.materials.html
+++ b/docs/pymatgen.alchemy.materials.html
@@ -13,7 +13,6 @@
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@@ -334,7 +333,7 @@ <h3>Navigation</h3>
 
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diff --git a/docs/pymatgen.alchemy.transmuters.html b/docs/pymatgen.alchemy.transmuters.html
index 0c3dd83434a..355db76fd7f 100644
--- a/docs/pymatgen.alchemy.transmuters.html
+++ b/docs/pymatgen.alchemy.transmuters.html
@@ -13,7 +13,6 @@
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@@ -108,6 +107,25 @@ <h3>Navigation</h3>
 </ul>
 </dd>
 </dl>
+<p>Initializes a transmuter from an initial list of
+<a class="reference internal" href="pymatgen.alchemy.materials.html#pymatgen.alchemy.materials.TransformedStructure" title="pymatgen.alchemy.materials.TransformedStructure"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.alchemy.materials.TransformedStructure</span></code></a>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>transformed_structures</strong> (<em>[</em><a class="reference internal" href="pymatgen.alchemy.materials.html#pymatgen.alchemy.materials.TransformedStructure" title="pymatgen.alchemy.materials.TransformedStructure"><em>TransformedStructure</em></a><em>]</em>) – Input transformed
+structures</p></li>
+<li><p><strong>transformations</strong> (<em>[</em><em>Transformations</em><em>]</em>) – New transformations to be
+applied to all structures.</p></li>
+<li><p><strong>extend_collection</strong> (<em>int</em>) – Whether to use more than one output
+structure from one-to-many transformations. extend_collection
+can be an int, which determines the maximum branching for each
+transformation.</p></li>
+<li><p><strong>ncores</strong> (<em>int</em>) – Number of cores to use for applying transformations.
+Uses multiprocessing.Pool. Default is None, which implies
+serial.</p></li>
+</ul>
+</dd>
+</dl>
 <dl class="method">
 <dt id="pymatgen.alchemy.transmuters.PoscarTransmuter.from_filenames">
 <em class="property">static </em><code class="sig-name descname">from_filenames</code><span class="sig-paren">(</span><em class="sig-param">poscar_filenames</em>, <em class="sig-param">transformations=None</em>, <em class="sig-param">extend_collection=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/alchemy/transmuters.html#PoscarTransmuter.from_filenames"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.alchemy.transmuters.PoscarTransmuter.from_filenames" title="Permalink to this definition">¶</a></dt>
@@ -372,7 +390,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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diff --git a/docs/pymatgen.analysis.adsorption.html b/docs/pymatgen.analysis.adsorption.html
index 55fc8b52e0a..d69bfadb21b 100644
--- a/docs/pymatgen.analysis.adsorption.html
+++ b/docs/pymatgen.analysis.adsorption.html
@@ -13,7 +13,6 @@
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@@ -453,7 +452,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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index 628f4ac5ebd..3b95158f00d 100644
--- a/docs/pymatgen.analysis.aflow_prototypes.html
+++ b/docs/pymatgen.analysis.aflow_prototypes.html
@@ -13,7 +13,6 @@
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@@ -141,7 +140,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
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diff --git a/docs/pymatgen.analysis.bond_dissociation.html b/docs/pymatgen.analysis.bond_dissociation.html
index e66eccc1267..e577ba36fa5 100644
--- a/docs/pymatgen.analysis.bond_dissociation.html
+++ b/docs/pymatgen.analysis.bond_dissociation.html
@@ -13,7 +13,6 @@
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@@ -175,7 +174,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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diff --git a/docs/pymatgen.analysis.bond_valence.html b/docs/pymatgen.analysis.bond_valence.html
index 854c9a932cc..d58464d5097 100644
--- a/docs/pymatgen.analysis.bond_valence.html
+++ b/docs/pymatgen.analysis.bond_valence.html
@@ -13,7 +13,6 @@
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@@ -239,7 +238,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html b/docs/pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html
index 003a6d74133..61bcb95f205 100644
--- a/docs/pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html
+++ b/docs/pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -1051,6 +1050,11 @@ <h3>Navigation</h3>
 parameters for the definition of neighbors in the Voronoi approach, with a bias for a given list of target
 environments. This can be useful in the case of, e.g. connectivity search of some given environment.
 The coordination environment is then given as the one with the lowest continuous symmetry measure</p>
+<p>Constructor for the SimpleAbundanceChemenvStrategy.
+:param structure_environments: StructureEnvironments object containing all the information on the</p>
+<blockquote>
+<div><p>coordination of the sites in a structure</p>
+</div></blockquote>
 <dl class="attribute">
 <dt id="pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.TargettedPenaltiedAbundanceChemenvStrategy.DEFAULT_TARGET_ENVIRONMENTS">
 <code class="sig-name descname">DEFAULT_TARGET_ENVIRONMENTS</code><em class="property"> = ['O:6']</em><a class="headerlink" href="#pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.TargettedPenaltiedAbundanceChemenvStrategy.DEFAULT_TARGET_ENVIRONMENTS" title="Permalink to this definition">¶</a></dt>
@@ -1244,7 +1248,7 @@ <h3>Navigation</h3>
 
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index ee0fdc41203..5b5be251ba2 100644
--- a/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html
+++ b/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.html
@@ -13,7 +13,6 @@
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@@ -529,7 +528,7 @@ <h3>Navigation</h3>
 
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index 8c784d9275d..74d917cc1b1 100644
--- a/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files.html
+++ b/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files.html
@@ -13,7 +13,6 @@
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@@ -99,7 +98,7 @@ <h3>Navigation</h3>
 
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index b7c1734dbb5..9b6ad1cb62d 100644
--- a/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.html
+++ b/docs/pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.html
@@ -13,7 +13,6 @@
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@@ -547,7 +546,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
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index 7ba97578026..07fc8bb3278 100644
--- a/docs/pymatgen.analysis.chemenv.coordination_environments.html
+++ b/docs/pymatgen.analysis.chemenv.coordination_environments.html
@@ -13,7 +13,6 @@
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index 5556cbe757e..e6087e6b870 100644
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index 2beb509d674..7e5fd704f27 100644
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index d907a3007e3..f22015a5b43 100644
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@@ -13,7 +13,6 @@
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index ba021098f45..c43c661fa1f 100644
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@@ -407,7 +406,7 @@ <h3>Navigation</h3>
 
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index 0ce01ac1bea..dcf52616a58 100644
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@@ -13,7 +13,6 @@
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@@ -51,6 +50,19 @@ <h3>Navigation</h3>
 <p>This class represents the compliance tensor, and exists
 primarily to keep the voigt-conversion scheme consistent
 since the compliance tensor has a unique vscale</p>
+<p>Create a Tensor object.  Note that the constructor uses __new__
+rather than __init__ according to the standard method of
+subclassing numpy ndarrays.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>input_array</strong> – (array-like with shape 3^N): array-like representing
+a tensor quantity in standard (i. e. non-voigt) notation</p></li>
+<li><p><strong>vscale</strong> – (N x M array-like): a matrix corresponding
+to the coefficients of the voigt-notation tensor</p></li>
+</ul>
+</dd>
+</dl>
 </dd></dl>
 
 <dl class="class">
@@ -538,6 +550,19 @@ <h3>Navigation</h3>
 <dd><p>Bases: <a class="reference internal" href="pymatgen.core.tensors.html#pymatgen.core.tensors.Tensor" title="pymatgen.core.tensors.Tensor"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.core.tensors.Tensor</span></code></a></p>
 <p>An object representing an nth-order tensor expansion
 of the stress-strain constitutive equations</p>
+<p>Create a Tensor object.  Note that the constructor uses __new__
+rather than __init__ according to the standard method of
+subclassing numpy ndarrays.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>input_array</strong> – (array-like with shape 3^N): array-like representing
+a tensor quantity in standard (i. e. non-voigt) notation</p></li>
+<li><p><strong>vscale</strong> – (N x M array-like): a matrix corresponding
+to the coefficients of the voigt-notation tensor</p></li>
+</ul>
+</dd>
+</dl>
 <dl class="attribute">
 <dt id="pymatgen.analysis.elasticity.elastic.NthOrderElasticTensor.GPa_to_eV_A3">
 <code class="sig-name descname">GPa_to_eV_A3</code><em class="property"> = 0.006241509125883258</em><a class="headerlink" href="#pymatgen.analysis.elasticity.elastic.NthOrderElasticTensor.GPa_to_eV_A3" title="Permalink to this definition">¶</a></dt>
@@ -810,7 +835,7 @@ <h3>Navigation</h3>
 
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index c06e0f515f6..b9fb2dc3f0c 100644
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index 06fa25d8b24..88d22751a17 100644
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+++ b/docs/pymatgen.analysis.elasticity.strain.html
@@ -13,7 +13,6 @@
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+++ b/docs/pymatgen.analysis.energy_models.html
@@ -13,7 +13,6 @@
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index d03b69d3f5e..8be08ac2690 100644
--- a/docs/pymatgen.analysis.ewald.html
+++ b/docs/pymatgen.analysis.ewald.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -377,7 +376,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.analysis.excitation.html b/docs/pymatgen.analysis.excitation.html
index d57fe2d5fcb..13c41b47bfd 100644
--- a/docs/pymatgen.analysis.excitation.html
+++ b/docs/pymatgen.analysis.excitation.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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@@ -57,6 +56,19 @@ <h3>Navigation</h3>
 </ul>
 </dd>
 </dl>
+<p>Args:
+x (ndarray): A ndarray of N values.
+y (ndarray): A ndarray of N x k values. The first dimension must be</p>
+<blockquote>
+<div><p>the same as that of x. Each of the k values are interpreted as</p>
+</div></blockquote>
+<dl class="simple">
+<dt><a href="#id1"><span class="problematic" id="id2">*</span></a>args: All subclasses should provide args other than x and y</dt><dd><p>when calling super, e.g., super().__init__(
+x, y, arg1, arg2, kwarg1=val1, ..). This guarantees the +, -, <a href="#id3"><span class="problematic" id="id4">*</span></a>,
+etc. operators work properly.</p>
+</dd>
+</dl>
+<p><a href="#id5"><span class="problematic" id="id6">**</span></a>kwargs: Same as that for <a href="#id7"><span class="problematic" id="id8">*</span></a>args.</p>
 <dl class="attribute">
 <dt id="pymatgen.analysis.excitation.ExcitationSpectrum.XLABEL">
 <code class="sig-name descname">XLABEL</code><em class="property"> = 'Energy (eV)'</em><a class="headerlink" href="#pymatgen.analysis.excitation.ExcitationSpectrum.XLABEL" title="Permalink to this definition">¶</a></dt>
@@ -113,7 +125,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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diff --git a/docs/pymatgen.analysis.ferroelectricity.html b/docs/pymatgen.analysis.ferroelectricity.html
index 2c2cd56745c..c5ee7545a35 100644
--- a/docs/pymatgen.analysis.ferroelectricity.html
+++ b/docs/pymatgen.analysis.ferroelectricity.html
@@ -13,7 +13,6 @@
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@@ -108,7 +107,7 @@ <h3>Navigation</h3>
 
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diff --git a/docs/pymatgen.analysis.ferroelectricity.polarization.html b/docs/pymatgen.analysis.ferroelectricity.polarization.html
index 8c1f1a0dd64..a4f34597af0 100644
--- a/docs/pymatgen.analysis.ferroelectricity.polarization.html
+++ b/docs/pymatgen.analysis.ferroelectricity.polarization.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -44,10 +43,53 @@ <h3>Navigation</h3>
             
   <div class="section" id="module-pymatgen.analysis.ferroelectricity.polarization">
 <span id="pymatgen-analysis-ferroelectricity-polarization-module"></span><h1>pymatgen.analysis.ferroelectricity.polarization module<a class="headerlink" href="#module-pymatgen.analysis.ferroelectricity.polarization" title="Permalink to this headline">¶</a></h1>
+<p>This module contains classes useful for analyzing ferroelectric candidates.
+The Polarization class can recover the spontaneous polarization using
+multiple calculations along a nonpolar to polar ferroelectric distortion.
+The EnergyTrend class is useful for assessing the trend in energy across
+the distortion.</p>
+<p>See Nicola Spaldin’s “A beginner’s guide to the modern theory of polarization”
+(<a class="reference external" href="https://arxiv.org/abs/1202.1831">https://arxiv.org/abs/1202.1831</a>) for an introduction to crystal polarization.</p>
+<p>VASP reports dipole moment values (used to derive polarization) along Cartesian
+directions (see pead.F around line 970 in the VASP source to confirm this).
+However, it is most convenient to perform the adjustments necessary to recover
+a same branch polarization by expressing the polarization along lattice directions.
+For this reason, calc_ionic calculates ionic contributions to the polarization
+along lattice directions. We provide the means to convert Cartesian direction
+polarizations to lattice direction polarizations in the Polarization class.</p>
+<p>We recommend using our calc_ionic function for calculating the ionic
+polarization rather than the values from OUTCAR. We find that the ionic
+dipole moment reported in OUTCAR differ from the naive calculation of
+\sum_i Z_i r_i where i is the index of the atom, Z_i is the ZVAL from the
+pseudopotential file, and r is the distance in Angstroms along the lattice vectors.
+Note, this difference is not simply due to VASP using Cartesian directions and
+calc_ionic using lattice direction but rather how the ionic polarization is
+computed. Compare calc_ionic to VASP SUBROUTINE POINT_CHARGE_DIPOL in dipol.F in
+the VASP source to see the differences. We are able to recover a smooth same
+branch polarization more frequently using the naive calculation in calc_ionic
+than using the ionic dipole moment reported in the OUTCAR.</p>
+<p>Some defintions of terms used in the comments below:</p>
+<p>A polar structure belongs to a polar space group. A polar space group has a
+one of the 10 polar point group:</p>
+<blockquote>
+<div><p>(1, 2, m, mm2, 4, 4mm, 3, 3m, 6, 6m)</p>
+</div></blockquote>
+<p>Being nonpolar is not equivalent to being centrosymmetric (having inversion
+symmetry). For example, any space group with point group 222 is nonpolar but
+not centrosymmetric.</p>
+<p>By symmetry the polarization of a nonpolar material modulo the quantum
+of polarization can only be zero or 1/2. We use a nonpolar structure to help
+determine the spontaneous polarization because it serves as a reference point.</p>
 <dl class="class">
 <dt id="pymatgen.analysis.ferroelectricity.polarization.EnergyTrend">
 <em class="property">class </em><code class="sig-name descname">EnergyTrend</code><span class="sig-paren">(</span><em class="sig-param">energies</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/ferroelectricity/polarization.html#EnergyTrend"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.ferroelectricity.polarization.EnergyTrend" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
+<p>Class for fitting trends to energies.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>energies</strong> – Energies</p>
+</dd>
+</dl>
 <dl class="method">
 <dt id="pymatgen.analysis.ferroelectricity.polarization.EnergyTrend.endpoints_minima">
 <code class="sig-name descname">endpoints_minima</code><span class="sig-paren">(</span><em class="sig-param">slope_cutoff=0.005</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/ferroelectricity/polarization.html#EnergyTrend.endpoints_minima"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.ferroelectricity.polarization.EnergyTrend.endpoints_minima" title="Permalink to this definition">¶</a></dt>
@@ -149,14 +191,14 @@ <h3>Navigation</h3>
 <p>Polarization is a lattice vector, meaning it is only defined modulo the
 quantum of polarization:</p>
 <blockquote>
-<div><p>P = P_0 + sum_i frac{n_i e R_i}{Omega}</p>
+<div><p>P = P_0 + \sum_i \frac{n_i e R_i}{\Omega}</p>
 </div></blockquote>
 <p>where n_i is an integer, e is the charge of the electron in microCoulombs,
-R_i is a lattice vector, and Omega is the unit cell volume in cm**3
+R_i is a lattice vector, and \Omega is the unit cell volume in cm**3
 (giving polarization units of microCoulomb per centimeter**2).</p>
 <p>The quantum of the dipole moment in electron Angstroms (as given by VASP) is:</p>
 <blockquote>
-<div><p>sum_i n_i e R_i</p>
+<div><p>\sum_i n_i e R_i</p>
 </div></blockquote>
 <p>where e, the electron charge, is 1 and R_i is a lattice vector, and n_i is an integer.</p>
 <p>Given N polarization calculations in order from nonpolar to polar, this algorithm
@@ -203,6 +245,7 @@ <h3>Navigation</h3>
 <dt id="pymatgen.analysis.ferroelectricity.polarization.PolarizationLattice">
 <em class="property">class </em><code class="sig-name descname">PolarizationLattice</code><span class="sig-paren">(</span><em class="sig-param">lattice: Union[List, numpy.ndarray, pymatgen.core.lattice.Lattice], species: List[Union[str, pymatgen.core.periodic_table.Element, pymatgen.core.periodic_table.Specie, pymatgen.core.periodic_table.DummySpecie, pymatgen.core.composition.Composition]], coords: Sequence[Sequence[float]], charge: float = None, validate_proximity: bool = False, to_unit_cell: bool = False, coords_are_cartesian: bool = False, site_properties: dict = None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/ferroelectricity/polarization.html#PolarizationLattice"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.ferroelectricity.polarization.PolarizationLattice" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="pymatgen.core.structure.html#pymatgen.core.structure.Structure" title="pymatgen.core.structure.Structure"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.core.structure.Structure</span></code></a></p>
+<p>Why is a Lattice inheriting a structure? This is ridiculous.</p>
 <p>Create a periodic structure.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -329,7 +372,7 @@ <h3>Navigation</h3>
 
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index 8cd5198f703..47a9063f7eb 100644
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+++ b/docs/pymatgen.analysis.find_dimension.html
@@ -13,7 +13,6 @@
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index ce85766a96e..3ba90605129 100644
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+++ b/docs/pymatgen.analysis.functional_groups.html
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index 643498c3ff4..b55abf2530d 100644
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index da9337c9e2c..ccb0ed0e19c 100644
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index 59f6e176978..943da201d14 100644
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index 48174360252..1f383532bbe 100644
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 0aea2012a38..5ab2dfa8bfe 100644
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+++ b/docs/pymatgen.analysis.interface.html
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@@ -607,7 +606,7 @@ <h3>Navigation</h3>
 
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@@ -239,7 +238,7 @@ <h3>Navigation</h3>
 
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@@ -303,7 +302,7 @@ <h3>Navigation</h3>
 
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@@ -287,7 +286,7 @@ <h3>Navigation</h3>
 
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@@ -13,7 +13,6 @@
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@@ -1134,7 +1133,7 @@ <h3>Navigation</h3>
 
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+++ b/docs/pymatgen.analysis.piezo.html
@@ -13,7 +13,6 @@
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@@ -112,7 +111,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -13,7 +13,6 @@
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@@ -368,7 +367,7 @@ <h3>Navigation</h3>
 
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diff --git a/docs/pymatgen.analysis.pourbaix_diagram.html b/docs/pymatgen.analysis.pourbaix_diagram.html
index 72e9e7022cf..92792ef77fc 100644
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+++ b/docs/pymatgen.analysis.pourbaix_diagram.html
@@ -13,7 +13,6 @@
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@@ -79,6 +78,20 @@ <h3>Navigation</h3>
 set to some other string for display purposes.</p>
 </dd></dl>
 
+<p>Args:
+composition (Composition): Composition
+energy (float): Energy for composition.
+name (str): Optional parameter to name the entry. Defaults to the</p>
+<blockquote>
+<div><p>reduced chemical formula.</p>
+</div></blockquote>
+<dl class="simple">
+<dt>attribute: Optional attribute of the entry. This can be used to</dt><dd><p>specify that the entry is a newly found compound, or to specify a
+particular label for the entry, or else … Used for further
+analysis and plotting purposes. An attribute can be anything
+but must be MSONable.</p>
+</dd>
+</dl>
 <dl class="method">
 <dt id="pymatgen.analysis.pourbaix_diagram.IonEntry.as_dict">
 <code class="sig-name descname">as_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/pourbaix_diagram.html#IonEntry.as_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.pourbaix_diagram.IonEntry.as_dict" title="Permalink to this definition">¶</a></dt>
@@ -624,7 +637,7 @@ <h3>Navigation</h3>
 
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@@ -13,7 +13,6 @@
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+++ b/docs/pymatgen.analysis.reaction_calculator.html
@@ -13,7 +13,6 @@
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index 834466640c1..29f0f672e74 100644
--- a/docs/pymatgen.analysis.structure_analyzer.html
+++ b/docs/pymatgen.analysis.structure_analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -450,7 +449,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_matcher.html b/docs/pymatgen.analysis.structure_matcher.html
index 90d4b604a4c..2e65d1a3f2a 100644
--- a/docs/pymatgen.analysis.structure_matcher.html
+++ b/docs/pymatgen.analysis.structure_matcher.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -77,13 +76,25 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.AbstractComparator.as_dict">
 <code class="sig-name descname">as_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/structure_matcher.html#AbstractComparator.as_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.structure_matcher.AbstractComparator.as_dict" title="Permalink to this definition">¶</a></dt>
-<dd><p>A JSON serializable dict representation of an object.</p>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>MSONable dict</p>
+</dd>
+</dl>
 </dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.AbstractComparator.from_dict">
 <em class="property">classmethod </em><code class="sig-name descname">from_dict</code><span class="sig-paren">(</span><em class="sig-param">d</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/structure_matcher.html#AbstractComparator.from_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.structure_matcher.AbstractComparator.from_dict" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>d</strong> – Dict representation</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>Comparator.</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.AbstractComparator.get_hash">
@@ -202,20 +213,15 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.OccupancyComparator.get_hash">
 <code class="sig-name descname">get_hash</code><span class="sig-paren">(</span><em class="sig-param">composition</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/structure_matcher.html#OccupancyComparator.get_hash"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.structure_matcher.OccupancyComparator.get_hash" title="Permalink to this definition">¶</a></dt>
-<dd><p>Defines a hash to group structures. This allows structures to be
-grouped efficiently for comparison. The hash must be invariant under
-supercell creation. (e.g. composition is not a good hash, but
-fractional_composition might be). Reduced formula is not a good formula,
-due to weird behavior with fractional occupancy.</p>
-<p>Composition is used here instead of structure because for anonymous
-matches it is much quicker to apply a substitution to a composition
-object than a structure object.</p>
-<dl class="field-list simple">
+<dd><dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>composition</strong> (<a class="reference internal" href="pymatgen.core.composition.html#pymatgen.core.composition.Composition" title="pymatgen.core.composition.Composition"><em>Composition</em></a>) – composition of the structure</p>
+<dd class="field-odd"><p><strong>composition</strong> – Composition.</p>
 </dd>
 <dt class="field-even">Returns</dt>
-<dd class="field-even"><p>A hashable object. Examples can be string formulas, integers etc.</p>
+<dd class="field-even"><p><ol class="arabic simple">
+<li><p>Difficult to define sensible hash</p></li>
+</ol>
+</p>
 </dd>
 </dl>
 </dd></dl>
@@ -463,7 +469,11 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.StructureMatcher.as_dict">
 <code class="sig-name descname">as_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/structure_matcher.html#StructureMatcher.as_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.structure_matcher.StructureMatcher.as_dict" title="Permalink to this definition">¶</a></dt>
-<dd><p>A JSON serializable dict representation of an object.</p>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>MSONable dict</p>
+</dd>
+</dl>
 </dd></dl>
 
 <dl class="method">
@@ -508,7 +518,15 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.StructureMatcher.from_dict">
 <em class="property">classmethod </em><code class="sig-name descname">from_dict</code><span class="sig-paren">(</span><em class="sig-param">d</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/analysis/structure_matcher.html#StructureMatcher.from_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.analysis.structure_matcher.StructureMatcher.from_dict" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>d</strong> – Dict representation</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>StructureMatcher</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.analysis.structure_matcher.StructureMatcher.get_all_anonymous_mappings">
@@ -744,7 +762,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_prediction.dopant_predictor.html b/docs/pymatgen.analysis.structure_prediction.dopant_predictor.html
index e8cea87e895..b381badbc3a 100644
--- a/docs/pymatgen.analysis.structure_prediction.dopant_predictor.html
+++ b/docs/pymatgen.analysis.structure_prediction.dopant_predictor.html
@@ -13,7 +13,6 @@
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -158,7 +157,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_prediction.html b/docs/pymatgen.analysis.structure_prediction.html
index 5e8106e3655..4bdfc3938a2 100644
--- a/docs/pymatgen.analysis.structure_prediction.html
+++ b/docs/pymatgen.analysis.structure_prediction.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -117,7 +116,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_prediction.substitution_probability.html b/docs/pymatgen.analysis.structure_prediction.substitution_probability.html
index 50c49b24745..aee4f2adec8 100644
--- a/docs/pymatgen.analysis.structure_prediction.substitution_probability.html
+++ b/docs/pymatgen.analysis.structure_prediction.substitution_probability.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -164,7 +163,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_prediction.substitutor.html b/docs/pymatgen.analysis.structure_prediction.substitutor.html
index 027481393d4..af3b0c2e04a 100644
--- a/docs/pymatgen.analysis.structure_prediction.substitutor.html
+++ b/docs/pymatgen.analysis.structure_prediction.substitutor.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -199,7 +198,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.structure_prediction.volume_predictor.html b/docs/pymatgen.analysis.structure_prediction.volume_predictor.html
index 63db47dafb2..84bdfc7889d 100644
--- a/docs/pymatgen.analysis.structure_prediction.volume_predictor.html
+++ b/docs/pymatgen.analysis.structure_prediction.volume_predictor.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -208,7 +207,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.substrate_analyzer.html b/docs/pymatgen.analysis.substrate_analyzer.html
index 60653a84fd5..5b13caa8bb6 100644
--- a/docs/pymatgen.analysis.substrate_analyzer.html
+++ b/docs/pymatgen.analysis.substrate_analyzer.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -368,7 +367,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.surface_analysis.html b/docs/pymatgen.analysis.surface_analysis.html
index 2520b0c48e5..c9521c1052e 100644
--- a/docs/pymatgen.analysis.surface_analysis.html
+++ b/docs/pymatgen.analysis.surface_analysis.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -1149,7 +1148,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.thermochemistry.html b/docs/pymatgen.analysis.thermochemistry.html
index 5c515ceeb15..a79c6a5d9e2 100644
--- a/docs/pymatgen.analysis.thermochemistry.html
+++ b/docs/pymatgen.analysis.thermochemistry.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -129,7 +128,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.transition_state.html b/docs/pymatgen.analysis.transition_state.html
index 1ebbad42f72..c3e2da8bfb1 100644
--- a/docs/pymatgen.analysis.transition_state.html
+++ b/docs/pymatgen.analysis.transition_state.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -252,7 +251,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.analysis.wulff.html b/docs/pymatgen.analysis.wulff.html
index ab65a2fe914..a56f58666c5 100644
--- a/docs/pymatgen.analysis.wulff.html
+++ b/docs/pymatgen.analysis.wulff.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -452,7 +451,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.analysis.xas.html b/docs/pymatgen.analysis.xas.html
index 98fc6eae0e7..0c9aadce451 100644
--- a/docs/pymatgen.analysis.xas.html
+++ b/docs/pymatgen.analysis.xas.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -114,7 +113,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.analysis.xas.spectrum.html b/docs/pymatgen.analysis.xas.spectrum.html
index 4d8de4f62e0..077ee9389b4 100644
--- a/docs/pymatgen.analysis.xas.spectrum.html
+++ b/docs/pymatgen.analysis.xas.spectrum.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -60,6 +59,19 @@ <h3>Navigation</h3>
 </ul>
 </dd>
 </dl>
+<p>Args:
+x (ndarray): A ndarray of N values.
+y (ndarray): A ndarray of N x k values. The first dimension must be</p>
+<blockquote>
+<div><p>the same as that of x. Each of the k values are interpreted as</p>
+</div></blockquote>
+<dl class="simple">
+<dt><a href="#id1"><span class="problematic" id="id2">*</span></a>args: All subclasses should provide args other than x and y</dt><dd><p>when calling super, e.g., super().__init__(
+x, y, arg1, arg2, kwarg1=val1, ..). This guarantees the +, -, <a href="#id3"><span class="problematic" id="id4">*</span></a>,
+etc. operators work properly.</p>
+</dd>
+</dl>
+<p><a href="#id5"><span class="problematic" id="id6">**</span></a>kwargs: Same as that for <a href="#id7"><span class="problematic" id="id8">*</span></a>args.</p>
 <dl class="attribute">
 <dt id="pymatgen.analysis.xas.spectrum.XANES.XLABEL">
 <code class="sig-name descname">XLABEL</code><em class="property"> = 'Energy'</em><a class="headerlink" href="#pymatgen.analysis.xas.spectrum.XANES.XLABEL" title="Permalink to this definition">¶</a></dt>
@@ -116,7 +128,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 9db7e0dec34..bc6dd1ca635 100644
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+++ b/docs/pymatgen.apps.battery.analyzer.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -195,7 +194,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index dee9e59d39d..c1db6f17923 100644
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+++ b/docs/pymatgen.apps.battery.battery_abc.html
@@ -13,7 +13,6 @@
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@@ -349,7 +348,7 @@ <h3>Navigation</h3>
 
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index f0f33bdb864..374531b3c3f 100644
--- a/docs/pymatgen.apps.battery.conversion_battery.html
+++ b/docs/pymatgen.apps.battery.conversion_battery.html
@@ -13,7 +13,6 @@
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@@ -343,7 +342,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 13403e660d5..196808d9629 100644
--- a/docs/pymatgen.apps.battery.html
+++ b/docs/pymatgen.apps.battery.html
@@ -13,7 +13,6 @@
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@@ -120,7 +119,7 @@ <h3>Navigation</h3>
 
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@@ -378,7 +377,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 5dd269ee3c1..77cc64dcdfd 100644
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+++ b/docs/pymatgen.apps.battery.plotter.html
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@@ -168,7 +167,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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index 79a9dec98f5..358fc173adb 100644
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@@ -342,7 +341,7 @@ <h3>Navigation</h3>
 
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index f845f99380f..841a5b7a792 100644
--- a/docs/pymatgen.apps.borg.html
+++ b/docs/pymatgen.apps.borg.html
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@@ -117,7 +116,7 @@ <h3>Navigation</h3>
 
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index 8015eafcb5a..0cbbe59967d 100644
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@@ -160,7 +159,7 @@ <h3>Navigation</h3>
 
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index 6a9abaab791..8094d0ac12d 100644
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+++ b/docs/pymatgen.apps.html
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@@ -136,7 +135,7 @@ <h3>Navigation</h3>
 
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index 1b5bc8b1ea2..0fd4159b79c 100644
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+++ b/docs/pymatgen.cli.feff_input_generation.html
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index 75f30a01374..572d2c853c1 100644
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@@ -95,7 +94,7 @@ <h3>Navigation</h3>
 
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index 612a41c877c..a7835ddaebd 100644
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@@ -99,7 +98,7 @@ <h3>Navigation</h3>
 
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index c2df75178f7..6faffc5cc51 100644
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@@ -382,7 +381,7 @@ <h3>Navigation</h3>
 
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index 6fb361c3150..3096c994804 100644
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@@ -122,7 +121,7 @@ <h3>Navigation</h3>
 
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index 781692efc1a..442c0ab38c1 100644
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diff --git a/docs/pymatgen.core.composition.html b/docs/pymatgen.core.composition.html
index 65ab845520c..f7da95018c0 100644
--- a/docs/pymatgen.core.composition.html
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@@ -195,9 +194,7 @@ <h3>Navigation</h3>
 <dl class="attribute">
 <dt id="pymatgen.core.composition.Composition.amount_tolerance">
 <code class="sig-name descname">amount_tolerance</code><em class="property"> = 1e-08</em><a class="headerlink" href="#pymatgen.core.composition.Composition.amount_tolerance" title="Permalink to this definition">¶</a></dt>
-<dd><p>Special formula handling for peroxides and certain elements. This is so
-that formula output does not write LiO instead of Li2O2 for example.</p>
-</dd></dl>
+<dd></dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.core.composition.Composition.anonymized_formula">
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index 1826b695377..fd39dab7c51 100644
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diff --git a/docs/pymatgen.core.lattice.html b/docs/pymatgen.core.lattice.html
index 7cce016fdae..bd41c5afbb0 100644
--- a/docs/pymatgen.core.lattice.html
+++ b/docs/pymatgen.core.lattice.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -256,20 +255,8 @@ <h3>Navigation</h3>
 
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.from_lengths_and_angles">
-<em class="property">static </em><code class="sig-name descname">from_lengths_and_angles</code><span class="sig-paren">(</span><em class="sig-param">abc: Sequence[float], ang: Sequence[float]</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/core/lattice.html#Lattice.from_lengths_and_angles"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.Lattice.from_lengths_and_angles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Create a Lattice using unit cell lengths and angles (in degrees).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>abc</strong> (<em>3x1 array</em>) – Lattice parameters, e.g. (4, 4, 5).</p></li>
-<li><p><strong>ang</strong> (<em>3x1 array</em>) – Lattice angles in degrees, e.g., (90,90,120).</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>A Lattice with the specified lattice parameters.</p>
-</dd>
-</dl>
-</dd></dl>
+<em class="property">static </em><code class="sig-name descname">from_lengths_and_angles</code><span class="sig-paren">(</span><em class="sig-param">*args</em>, <em class="sig-param">**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#pymatgen.core.lattice.Lattice.from_lengths_and_angles" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.from_parameters">
@@ -477,7 +464,7 @@ <h3>Navigation</h3>
 
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.get_points_in_sphere">
-<code class="sig-name descname">get_points_in_sphere</code><span class="sig-paren">(</span><em class="sig-param">frac_points: List[Union[List[float], numpy.ndarray]], center: Union[List[float], numpy.ndarray], r: float, zip_results=True</em><span class="sig-paren">)</span> &#x2192; Union[List[Tuple[numpy.ndarray, float, int, numpy.ndarray]], Tuple[List[numpy.ndarray], List[float], List[int], List[numpy.ndarray]]]<a class="reference internal" href="_modules/pymatgen/core/lattice.html#Lattice.get_points_in_sphere"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.Lattice.get_points_in_sphere" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">get_points_in_sphere</code><span class="sig-paren">(</span><em class="sig-param">frac_points: List[Union[List[float], numpy.ndarray]], center: Union[List[float], numpy.ndarray], r: float, zip_results=True</em><span class="sig-paren">)</span> &#x2192; Union[List[Tuple[numpy.ndarray, float, int, numpy.ndarray]], List[numpy.ndarray]]<a class="reference internal" href="_modules/pymatgen/core/lattice.html#Lattice.get_points_in_sphere"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.Lattice.get_points_in_sphere" title="Permalink to this definition">¶</a></dt>
 <dd><p>Find all points within a sphere from the point taking into account
 periodic boundary conditions. This includes sites in other periodic
 images.</p>
@@ -517,6 +504,11 @@ <h3>Navigation</h3>
 </dl>
 </dd></dl>
 
+<dl class="method">
+<dt id="pymatgen.core.lattice.Lattice.get_points_in_sphere_old">
+<code class="sig-name descname">get_points_in_sphere_old</code><span class="sig-paren">(</span><em class="sig-param">**kwargs</em><span class="sig-paren">)</span><a class="headerlink" href="#pymatgen.core.lattice.Lattice.get_points_in_sphere_old" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.get_recp_symmetry_operation">
 <code class="sig-name descname">get_recp_symmetry_operation</code><span class="sig-paren">(</span><em class="sig-param">symprec: float = 0.01</em><span class="sig-paren">)</span> &#x2192; List<a class="reference internal" href="_modules/pymatgen/core/lattice.html#Lattice.get_recp_symmetry_operation"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.Lattice.get_recp_symmetry_operation" title="Permalink to this definition">¶</a></dt>
@@ -623,8 +615,7 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.lengths_and_angles">
 <em class="property">property </em><code class="sig-name descname">lengths_and_angles</code><a class="headerlink" href="#pymatgen.core.lattice.Lattice.lengths_and_angles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns (lattice lengths, lattice angles).</p>
-</dd></dl>
+<dd></dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.lll_inverse">
@@ -729,6 +720,17 @@ <h3>Navigation</h3>
 </dl>
 </dd></dl>
 
+<dl class="method">
+<dt id="pymatgen.core.lattice.Lattice.parameters">
+<em class="property">property </em><code class="sig-name descname">parameters</code><a class="headerlink" href="#pymatgen.core.lattice.Lattice.parameters" title="Permalink to this definition">¶</a></dt>
+<dd><p>(a, b, c, alpha, beta, gamma).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type</dt>
+<dd class="field-odd"><p>Returns</p>
+</dd>
+</dl>
+</dd></dl>
+
 <dl class="method">
 <dt id="pymatgen.core.lattice.Lattice.reciprocal_lattice">
 <em class="property">property </em><code class="sig-name descname">reciprocal_lattice</code><a class="headerlink" href="#pymatgen.core.lattice.Lattice.reciprocal_lattice" title="Permalink to this definition">¶</a></dt>
@@ -804,6 +806,23 @@ <h3>Navigation</h3>
 
 </dd></dl>
 
+<dl class="function">
+<dt id="pymatgen.core.lattice.find_neighbors">
+<code class="sig-name descname">find_neighbors</code><span class="sig-paren">(</span><em class="sig-param">label: numpy.ndarray</em>, <em class="sig-param">nx: int</em>, <em class="sig-param">ny: int</em>, <em class="sig-param">nz: int</em><span class="sig-paren">)</span> &#x2192; List[numpy.ndarray]<a class="reference internal" href="_modules/pymatgen/core/lattice.html#find_neighbors"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.find_neighbors" title="Permalink to this definition">¶</a></dt>
+<dd><p>Given a cube index, find the neighbor cube indices</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>label</strong> – (array) (n,) or (n x 3) indice array</p></li>
+<li><p><strong>nx</strong> – (int) number of cells in y direction</p></li>
+<li><p><strong>ny</strong> – (int) number of cells in y direction</p></li>
+<li><p><strong>nz</strong> – (int) number of cells in z direction</p></li>
+</ul>
+</dd>
+</dl>
+<p>Returns: neighbor cell indices</p>
+</dd></dl>
+
 <dl class="function">
 <dt id="pymatgen.core.lattice.get_integer_index">
 <code class="sig-name descname">get_integer_index</code><span class="sig-paren">(</span><em class="sig-param">miller_index: Sequence[float], round_dp: int = 4, verbose: bool = True</em><span class="sig-paren">)</span> &#x2192; Tuple[int, int, int]<a class="reference internal" href="_modules/pymatgen/core/lattice.html#get_integer_index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.get_integer_index" title="Permalink to this definition">¶</a></dt>
@@ -826,6 +845,29 @@ <h3>Navigation</h3>
 </dl>
 </dd></dl>
 
+<dl class="function">
+<dt id="pymatgen.core.lattice.get_points_in_spheres">
+<code class="sig-name descname">get_points_in_spheres</code><span class="sig-paren">(</span><em class="sig-param">all_coords: numpy.ndarray</em>, <em class="sig-param">center_coords: numpy.ndarray</em>, <em class="sig-param">r: float</em>, <em class="sig-param">pbc: Union[bool</em>, <em class="sig-param">List[bool]] = True</em>, <em class="sig-param">numerical_tol: float = 1e-08</em>, <em class="sig-param">lattice: pymatgen.core.lattice.Lattice = None</em>, <em class="sig-param">return_fcoords: bool = False</em><span class="sig-paren">)</span> &#x2192; List[List[Tuple[numpy.ndarray, float, int, numpy.ndarray]]]<a class="reference internal" href="_modules/pymatgen/core/lattice.html#get_points_in_spheres"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.lattice.get_points_in_spheres" title="Permalink to this definition">¶</a></dt>
+<dd><p>For each point in <cite>center_coords</cite>, get all the neighboring points in <cite>all_coords</cite> that are within the
+cutoff radius <cite>r</cite>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>all_coords</strong> – (list of cartesian coordinates) all available points</p></li>
+<li><p><strong>center_coords</strong> – (list of cartesian coordinates) all centering points</p></li>
+<li><p><strong>r</strong> – (float) cutoff radius</p></li>
+<li><p><strong>pbc</strong> – (bool or a list of bool) whether to set periodic boundaries</p></li>
+<li><p><strong>numerical_tol</strong> – (float) numerical tolerance</p></li>
+<li><p><strong>lattice</strong> – (Lattice) lattice to consider when PBC is enabled</p></li>
+<li><p><strong>return_fcoords</strong> – (bool) whether to return fractional coords when pbc is set.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>List[List[Tuple[coords, distance, index, image]]]</p>
+</dd>
+</dl>
+</dd></dl>
+
 </div>
 
 
@@ -870,7 +912,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.core.libxcfunc.html b/docs/pymatgen.core.libxcfunc.html
index 511202f0e29..2992f3dea28 100644
--- a/docs/pymatgen.core.libxcfunc.html
+++ b/docs/pymatgen.core.libxcfunc.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -2007,7 +2006,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.core.molecular_orbitals.html b/docs/pymatgen.core.molecular_orbitals.html
index 22b785b2b9a..7769911cbef 100644
--- a/docs/pymatgen.core.molecular_orbitals.html
+++ b/docs/pymatgen.core.molecular_orbitals.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -172,7 +171,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.core.operations.html b/docs/pymatgen.core.operations.html
index e85328b0a60..7b255134bcb 100644
--- a/docs/pymatgen.core.operations.html
+++ b/docs/pymatgen.core.operations.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -494,7 +493,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.core.periodic_table.html b/docs/pymatgen.core.periodic_table.html
index 49db74756f2..3ba0e2a4808 100644
--- a/docs/pymatgen.core.periodic_table.html
+++ b/docs/pymatgen.core.periodic_table.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -1579,7 +1578,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.core.sites.html b/docs/pymatgen.core.sites.html
index 69605c31c1c..96fb69d0fda 100644
--- a/docs/pymatgen.core.sites.html
+++ b/docs/pymatgen.core.sites.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -459,7 +458,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.core.spectrum.html b/docs/pymatgen.core.spectrum.html
index 98ad8fab87f..52825f11603 100644
--- a/docs/pymatgen.core.spectrum.html
+++ b/docs/pymatgen.core.spectrum.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -178,7 +177,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.core.structure.html b/docs/pymatgen.core.structure.html
index e41865529df..53e7a771634 100644
--- a/docs/pymatgen.core.structure.html
+++ b/docs/pymatgen.core.structure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -2012,17 +2011,6 @@ <h3>Navigation</h3>
 Raised when the structure has problems, e.g., atoms that are too close.</p>
 </dd></dl>
 
-<dl class="function">
-<dt id="pymatgen.core.structure.find_neighbors">
-<code class="sig-name descname">find_neighbors</code><span class="sig-paren">(</span><em class="sig-param">label</em>, <em class="sig-param">nx</em>, <em class="sig-param">ny</em>, <em class="sig-param">nz</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/core/structure.html#find_neighbors"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.core.structure.find_neighbors" title="Permalink to this definition">¶</a></dt>
-<dd><p>Given a cube index, find the neighbor cube indices
-:param label: (array) (n,) or (n x 3) indice array
-:param nx: (int) number of cells in y direction
-:param ny: (int) number of cells in y direction
-:param nz: (int) number of cells in z direction
-:return: neighbor cell indices</p>
-</dd></dl>
-
 </div>
 
 
@@ -2067,7 +2055,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.core.surface.html b/docs/pymatgen.core.surface.html
index d75cb380a60..a3084e5166f 100644
--- a/docs/pymatgen.core.surface.html
+++ b/docs/pymatgen.core.surface.html
@@ -13,7 +13,6 @@
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@@ -1081,7 +1080,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.core.tensors.html b/docs/pymatgen.core.tensors.html
index 1469012b64e..0b947b3d844 100644
--- a/docs/pymatgen.core.tensors.html
+++ b/docs/pymatgen.core.tensors.html
@@ -13,7 +13,6 @@
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@@ -931,7 +930,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 69b9b611510..2baeb0c42fd 100644
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+++ b/docs/pymatgen.core.trajectory.html
@@ -13,7 +13,6 @@
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@@ -244,7 +243,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 77cbc60fd34..5e332876080 100644
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+++ b/docs/pymatgen.core.units.html
@@ -13,7 +13,6 @@
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@@ -494,7 +493,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 00d79698ff5..46eee6cb3bf 100644
--- a/docs/pymatgen.core.xcfunc.html
+++ b/docs/pymatgen.core.xcfunc.html
@@ -13,7 +13,6 @@
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@@ -212,7 +211,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 7d0b352b717..de91c7b1fc8 100644
--- a/docs/pymatgen.dao.html
+++ b/docs/pymatgen.dao.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -89,7 +88,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index e0c559a2b70..cb5fe6f56fe 100644
--- a/docs/pymatgen.electronic_structure.bandstructure.html
+++ b/docs/pymatgen.electronic_structure.bandstructure.html
@@ -13,7 +13,6 @@
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@@ -740,7 +739,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index c14d66eede2..9c4e4d3eeb9 100644
--- a/docs/pymatgen.electronic_structure.boltztrap.html
+++ b/docs/pymatgen.electronic_structure.boltztrap.html
@@ -13,7 +13,6 @@
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@@ -1042,7 +1041,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index df6619128f5..79b3c2ff666 100644
--- a/docs/pymatgen.electronic_structure.boltztrap2.html
+++ b/docs/pymatgen.electronic_structure.boltztrap2.html
@@ -13,7 +13,6 @@
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@@ -437,7 +436,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.electronic_structure.cohp.html b/docs/pymatgen.electronic_structure.cohp.html
index a8976403f94..fce775edb2b 100644
--- a/docs/pymatgen.electronic_structure.cohp.html
+++ b/docs/pymatgen.electronic_structure.cohp.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -44,17 +43,23 @@ <h3>Navigation</h3>
             
   <div class="section" id="module-pymatgen.electronic_structure.cohp">
 <span id="pymatgen-electronic-structure-cohp-module"></span><h1>pymatgen.electronic_structure.cohp module<a class="headerlink" href="#module-pymatgen.electronic_structure.cohp" title="Permalink to this headline">¶</a></h1>
+<p>This module defines classes to represent crystal orbital Hamilton
+populations (COHP) and integrated COHP (ICOHP), but can also be used
+for crystal orbital overlap populations (COOP).</p>
 <dl class="class">
 <dt id="pymatgen.electronic_structure.cohp.Cohp">
 <em class="property">class </em><code class="sig-name descname">Cohp</code><span class="sig-paren">(</span><em class="sig-param">efermi</em>, <em class="sig-param">energies</em>, <em class="sig-param">cohp</em>, <em class="sig-param">are_coops=False</em>, <em class="sig-param">icohp=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/electronic_structure/cohp.html#Cohp"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.electronic_structure.cohp.Cohp" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">monty.json.MSONable</span></code></p>
 <p>Basic COHP object.</p>
-<dl>
-<dt>Args/attributes:</dt><dd><p>are_coops: Indicates whether this object describes COHPs or COOPs.</p>
-<p>efermi: Fermi energy.</p>
-<p>energies: A sequence of energies.</p>
-<p>cohp ({Spin: np.array}): representing the COHP for each spin.</p>
-<p>icohp ({Spin: np.array}): representing the ICOHP for each spin.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>are_coops</strong> – Indicates whether this object describes COHPs or COOPs.</p></li>
+<li><p><strong>efermi</strong> – Fermi energy.</p></li>
+<li><p><strong>energies</strong> – A sequence of energies.</p></li>
+<li><p><strong>(</strong><strong>{Spin</strong> (<em>icohp</em>) – np.array}): representing the COHP for each spin.</p></li>
+<li><p><strong>(</strong><strong>{Spin</strong> – np.array}): representing the ICOHP for each spin.</p></li>
+</ul>
 </dd>
 </dl>
 <dl class="method">
@@ -262,6 +267,20 @@ <h3>Navigation</h3>
 <em class="property">class </em><code class="sig-name descname">IcohpCollection</code><span class="sig-paren">(</span><em class="sig-param">list_labels</em>, <em class="sig-param">list_atom1</em>, <em class="sig-param">list_atom2</em>, <em class="sig-param">list_length</em>, <em class="sig-param">list_translation</em>, <em class="sig-param">list_num</em>, <em class="sig-param">list_icohp</em>, <em class="sig-param">is_spin_polarized</em>, <em class="sig-param">are_coops=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/electronic_structure/cohp.html#IcohpCollection"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpCollection" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">monty.json.MSONable</span></code></p>
 <p>Class to store IcohpValues</p>
+<dl class="attribute">
+<dt id="pymatgen.electronic_structure.cohp.IcohpCollection.are_coops">
+<code class="sig-name descname">are_coops</code><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpCollection.are_coops" title="Permalink to this definition">¶</a></dt>
+<dt>
+<code class="sig-name descname">Boolean to indicate whether ICOHPs or ICOOPs are stored</code></dt>
+<dd></dd></dl>
+
+<dl class="attribute">
+<dt id="pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized">
+<code class="sig-name descname">is_spin_polarized</code><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized" title="Permalink to this definition">¶</a></dt>
+<dt>
+<code class="sig-name descname">Boolean to indicate if the Lobster calculation was done spin polarized or not</code></dt>
+<dd></dd></dl>
+
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><ul class="simple">
@@ -278,24 +297,16 @@ <h3>Navigation</h3>
 </ul>
 </dd>
 </dl>
-<dl class="attribute">
-<dt id="pymatgen.electronic_structure.cohp.IcohpCollection.are_coops">
-<code class="sig-name descname">are_coops</code><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpCollection.are_coops" title="Permalink to this definition">¶</a></dt>
-<dt>
-<code class="sig-name descname">Boolean to indicate whether ICOHPs or ICOOPs are stored</code></dt>
-<dd></dd></dl>
-
-<dl class="attribute">
-<dt id="pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized">
-<code class="sig-name descname">is_spin_polarized</code><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized" title="Permalink to this definition">¶</a></dt>
-<dt>
-<code class="sig-name descname">Boolean to indicate if the Lobster calculation was done spin polarized or not</code></dt>
-<dd></dd></dl>
-
 <dl class="method">
 <dt>
 <em class="property">property </em><code class="sig-name descname">are_coops</code></dt>
-<dd></dd></dl>
+<dd><p>Whether this is coops.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type</dt>
+<dd class="field-odd"><p>return</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.electronic_structure.cohp.IcohpCollection.extremum_icohpvalue">
@@ -390,7 +401,13 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt>
 <em class="property">property </em><code class="sig-name descname">is_spin_polarized</code></dt>
-<dd></dd></dl>
+<dd><p>Whether it is spin polarized.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type</dt>
+<dd class="field-odd"><p>return</p>
+</dd>
+</dl>
+</dd></dl>
 
 </dd></dl>
 
@@ -398,14 +415,7 @@ <h3>Navigation</h3>
 <dt id="pymatgen.electronic_structure.cohp.IcohpValue">
 <em class="property">class </em><code class="sig-name descname">IcohpValue</code><span class="sig-paren">(</span><em class="sig-param">label</em>, <em class="sig-param">atom1</em>, <em class="sig-param">atom2</em>, <em class="sig-param">length</em>, <em class="sig-param">translation</em>, <em class="sig-param">num</em>, <em class="sig-param">icohp</em>, <em class="sig-param">are_coops=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/electronic_structure/cohp.html#IcohpValue"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpValue" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">monty.json.MSONable</span></code></p>
-<p>Class to store information on an ICOHP or ICOOP value
-:param label: label for the icohp
-:param atom1: str of atom that is contributing to the bond
-:param atom2: str of second atom that is contributing to the bond
-:param length: float of bond lengths
-:param translation: translation list, e.g. [0,0,0]
-:param num: integer describing how often the bond exists
-:param icohp: dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</p>
+<p>Class to store information on an ICOHP or ICOOP value</p>
 <dl class="attribute">
 <dt id="pymatgen.electronic_structure.cohp.IcohpValue.num_bonds">
 <code class="sig-name descname">num_bonds</code><a class="headerlink" href="#pymatgen.electronic_structure.cohp.IcohpValue.num_bonds" title="Permalink to this definition">¶</a></dt>
@@ -434,6 +444,19 @@ <h3>Navigation</h3>
 <code class="sig-name descname">sum of icohp/icoop of both spin channels</code></dt>
 <dd></dd></dl>
 
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>label</strong> – label for the icohp</p></li>
+<li><p><strong>atom1</strong> – str of atom that is contributing to the bond</p></li>
+<li><p><strong>atom2</strong> – str of second atom that is contributing to the bond</p></li>
+<li><p><strong>length</strong> – float of bond lengths</p></li>
+<li><p><strong>translation</strong> – translation list, e.g. [0,0,0]</p></li>
+<li><p><strong>num</strong> – integer describing how often the bond exists</p></li>
+<li><p><strong>icohp</strong> – dict={Spin.up: icohpvalue for spin.up, Spin.down: icohpvalue for spin.down}</p></li>
+</ul>
+</dd>
+</dl>
 <dl class="method">
 <dt>
 <em class="property">property </em><code class="sig-name descname">are_coops</code></dt>
@@ -529,7 +552,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index c5bfcd7a039..d895d52470d 100644
--- a/docs/pymatgen.electronic_structure.core.html
+++ b/docs/pymatgen.electronic_structure.core.html
@@ -13,7 +13,6 @@
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index c2ad9f5594c..32074701954 100644
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+++ b/docs/pymatgen.electronic_structure.dos.html
@@ -13,7 +13,6 @@
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@@ -734,7 +733,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 9220c4af712..7d300eff436 100644
--- a/docs/pymatgen.electronic_structure.html
+++ b/docs/pymatgen.electronic_structure.html
@@ -13,7 +13,6 @@
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@@ -121,7 +120,7 @@ <h3>Navigation</h3>
 
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         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -549,7 +548,7 @@ <h3>Navigation</h3>
 
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@@ -836,7 +835,7 @@ <h3>Navigation</h3>
 
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@@ -671,7 +670,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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@@ -160,7 +159,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.abinit.events.html b/docs/pymatgen.io.abinit.events.html
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@@ -190,6 +189,7 @@ <h3>Navigation</h3>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.io.abinit.events.ErrorHandler</span></code></p>
 <p>Handle DilatmxError. Abinit produces a netcdf file with the last structure before aborting
 The handler changes the structure in the input with the last configuration and modify the value of dilatmx.</p>
+<p>Simple init for compatibility with introspection in as_dict/from_dict</p>
 <dl class="method">
 <dt id="pymatgen.io.abinit.events.DilatmxErrorHandler.as_dict">
 <code class="sig-name descname">as_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/abinit/events.html#DilatmxErrorHandler.as_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.abinit.events.DilatmxErrorHandler.as_dict" title="Permalink to this definition">¶</a></dt>
@@ -281,7 +281,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.flows.html b/docs/pymatgen.io.abinit.flows.html
index 111d205099f..b74431f00ac 100644
--- a/docs/pymatgen.io.abinit.flows.html
+++ b/docs/pymatgen.io.abinit.flows.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -1426,7 +1425,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.helpers.html b/docs/pymatgen.io.abinit.helpers.html
index 55131ccd0a9..90871152d0f 100644
--- a/docs/pymatgen.io.abinit.helpers.html
+++ b/docs/pymatgen.io.abinit.helpers.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -147,7 +146,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.html b/docs/pymatgen.io.abinit.html
index 7c3b6406f38..eb5d2bd898c 100644
--- a/docs/pymatgen.io.abinit.html
+++ b/docs/pymatgen.io.abinit.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -134,7 +133,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.launcher.html b/docs/pymatgen.io.abinit.launcher.html
index 290c6083b59..a7fc6ce4df1 100644
--- a/docs/pymatgen.io.abinit.launcher.html
+++ b/docs/pymatgen.io.abinit.launcher.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -413,7 +412,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.netcdf.html b/docs/pymatgen.io.abinit.netcdf.html
index 00fa7981869..cd4c1e11e81 100644
--- a/docs/pymatgen.io.abinit.netcdf.html
+++ b/docs/pymatgen.io.abinit.netcdf.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -256,7 +255,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.nodes.html b/docs/pymatgen.io.abinit.nodes.html
index 21ff190dc19..ca83bb9087c 100644
--- a/docs/pymatgen.io.abinit.nodes.html
+++ b/docs/pymatgen.io.abinit.nodes.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -310,7 +309,7 @@ <h3>Navigation</h3>
 <p>Nodes are hashable and can be tested for equality</p>
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.ALL_STATUS">
-<code class="sig-name descname">ALL_STATUS</code><em class="property"> = [&lt;Status: Initialized, at 120882245952&gt;, &lt;Status: Locked, at 120882246032&gt;, &lt;Status: Ready, at 120882246112&gt;, &lt;Status: Submitted, at 120882246352&gt;, &lt;Status: Running, at 120882246592&gt;, &lt;Status: Done, at 120882248192&gt;, &lt;Status: AbiCritical, at 120882248272&gt;, &lt;Status: QCritical, at 120882247152&gt;, &lt;Status: Unconverged, at 120882248672&gt;, &lt;Status: Error, at 120882247312&gt;, &lt;Status: Completed, at 120882246512&gt;]</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.ALL_STATUS" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">ALL_STATUS</code><em class="property"> = [&lt;Status: Initialized, at 120768604192&gt;, &lt;Status: Locked, at 120771305216&gt;, &lt;Status: Ready, at 120771302976&gt;, &lt;Status: Submitted, at 120771303776&gt;, &lt;Status: Running, at 120771301776&gt;, &lt;Status: Done, at 120771301616&gt;, &lt;Status: AbiCritical, at 120771304176&gt;, &lt;Status: QCritical, at 120771304256&gt;, &lt;Status: Unconverged, at 120771303456&gt;, &lt;Status: Error, at 120771305376&gt;, &lt;Status: Completed, at 120771304576&gt;]</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.ALL_STATUS" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
@@ -327,57 +326,57 @@ <h3>Navigation</h3>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_ABICRITICAL">
-<code class="sig-name descname">S_ABICRITICAL</code><em class="property"> = &lt;Status: AbiCritical, at 120882248272&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_ABICRITICAL" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_ABICRITICAL</code><em class="property"> = &lt;Status: AbiCritical, at 120771304176&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_ABICRITICAL" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_DONE">
-<code class="sig-name descname">S_DONE</code><em class="property"> = &lt;Status: Done, at 120882248192&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_DONE" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_DONE</code><em class="property"> = &lt;Status: Done, at 120771301616&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_DONE" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_ERROR">
-<code class="sig-name descname">S_ERROR</code><em class="property"> = &lt;Status: Error, at 120882247312&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_ERROR" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_ERROR</code><em class="property"> = &lt;Status: Error, at 120771305376&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_ERROR" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_INIT">
-<code class="sig-name descname">S_INIT</code><em class="property"> = &lt;Status: Initialized, at 120882245952&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_INIT" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_INIT</code><em class="property"> = &lt;Status: Initialized, at 120768604192&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_INIT" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_LOCKED">
-<code class="sig-name descname">S_LOCKED</code><em class="property"> = &lt;Status: Locked, at 120882246032&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_LOCKED" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_LOCKED</code><em class="property"> = &lt;Status: Locked, at 120771305216&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_LOCKED" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_OK">
-<code class="sig-name descname">S_OK</code><em class="property"> = &lt;Status: Completed, at 120882246512&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_OK" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_OK</code><em class="property"> = &lt;Status: Completed, at 120771304576&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_OK" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_QCRITICAL">
-<code class="sig-name descname">S_QCRITICAL</code><em class="property"> = &lt;Status: QCritical, at 120882247152&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_QCRITICAL" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_QCRITICAL</code><em class="property"> = &lt;Status: QCritical, at 120771304256&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_QCRITICAL" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_READY">
-<code class="sig-name descname">S_READY</code><em class="property"> = &lt;Status: Ready, at 120882246112&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_READY" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_READY</code><em class="property"> = &lt;Status: Ready, at 120771302976&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_READY" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_RUN">
-<code class="sig-name descname">S_RUN</code><em class="property"> = &lt;Status: Running, at 120882246592&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_RUN" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_RUN</code><em class="property"> = &lt;Status: Running, at 120771301776&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_RUN" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_SUB">
-<code class="sig-name descname">S_SUB</code><em class="property"> = &lt;Status: Submitted, at 120882246352&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_SUB" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_SUB</code><em class="property"> = &lt;Status: Submitted, at 120771303776&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_SUB" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.nodes.Node.S_UNCONVERGED">
-<code class="sig-name descname">S_UNCONVERGED</code><em class="property"> = &lt;Status: Unconverged, at 120882248672&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_UNCONVERGED" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_UNCONVERGED</code><em class="property"> = &lt;Status: Unconverged, at 120771303456&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.nodes.Node.S_UNCONVERGED" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
@@ -950,7 +949,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.pseudos.html b/docs/pymatgen.io.abinit.pseudos.html
index d6cf7982a75..2c6e4dea8e3 100644
--- a/docs/pymatgen.io.abinit.pseudos.html
+++ b/docs/pymatgen.io.abinit.pseudos.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -511,7 +510,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.qadapters.html b/docs/pymatgen.io.abinit.qadapters.html
index 41b23fd1aab..f6b2ea44495 100644
--- a/docs/pymatgen.io.abinit.qadapters.html
+++ b/docs/pymatgen.io.abinit.qadapters.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -109,7 +108,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.qjobs.html b/docs/pymatgen.io.abinit.qjobs.html
index 8da691e4c41..a752e812181 100644
--- a/docs/pymatgen.io.abinit.qjobs.html
+++ b/docs/pymatgen.io.abinit.qjobs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -142,7 +141,7 @@ <h3>Navigation</h3>
 </dl>
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.PbsProJob.PBSSTAT_TO_SLURM">
-<code class="sig-name descname">PBSSTAT_TO_SLURM</code><em class="property"> = {'E': &lt;JobStatus: FAILED, at 120890278048&gt;, 'F': &lt;JobStatus: COMPLETED, at 120890281008&gt;, 'Q': &lt;JobStatus: PENDING, at 112282211344&gt;, 'R': &lt;JobStatus: RUNNING, at 120890281248&gt;, 'S': &lt;JobStatus: SUSPENDED, at 120890281088&gt;}</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.PbsProJob.PBSSTAT_TO_SLURM" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">PBSSTAT_TO_SLURM</code><em class="property"> = {'E': &lt;JobStatus: FAILED, at 120775450448&gt;, 'F': &lt;JobStatus: COMPLETED, at 120775449248&gt;, 'Q': &lt;JobStatus: PENDING, at 120775450704&gt;, 'R': &lt;JobStatus: RUNNING, at 120775447008&gt;, 'S': &lt;JobStatus: SUSPENDED, at 120775449648&gt;}</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.PbsProJob.PBSSTAT_TO_SLURM" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
@@ -184,57 +183,57 @@ <h3>Navigation</h3>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_CANCELLED">
-<code class="sig-name descname">S_CANCELLED</code><em class="property"> = &lt;JobStatus: CANCELLED, at 120890279328&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_CANCELLED" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_CANCELLED</code><em class="property"> = &lt;JobStatus: CANCELLED, at 120775449968&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_CANCELLED" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_COMPLETED">
-<code class="sig-name descname">S_COMPLETED</code><em class="property"> = &lt;JobStatus: COMPLETED, at 120890281008&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_COMPLETED" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">S_COMPLETED</code><em class="property"> = &lt;JobStatus: COMPLETED, at 120775449248&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_COMPLETED" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
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+<code class="sig-name descname">S_FAILED</code><em class="property"> = &lt;JobStatus: FAILED, at 120775450448&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_FAILED" title="Permalink to this definition">¶</a></dt>
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 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_NODEFAIL">
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+<code class="sig-name descname">S_NODEFAIL</code><em class="property"> = &lt;JobStatus: NODEFAIL, at 120775448688&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_NODEFAIL" title="Permalink to this definition">¶</a></dt>
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 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_PENDING">
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+<code class="sig-name descname">S_PENDING</code><em class="property"> = &lt;JobStatus: PENDING, at 120775450704&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_PENDING" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_PREEMPTED">
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+<code class="sig-name descname">S_PREEMPTED</code><em class="property"> = &lt;JobStatus: PREEMPTED, at 120775450288&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_PREEMPTED" title="Permalink to this definition">¶</a></dt>
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 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_RESIZING">
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+<code class="sig-name descname">S_RESIZING</code><em class="property"> = &lt;JobStatus: RESIZING, at 120775450528&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_RESIZING" title="Permalink to this definition">¶</a></dt>
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 <dl class="attribute">
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+<code class="sig-name descname">S_RUNNING</code><em class="property"> = &lt;JobStatus: RUNNING, at 120775447008&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_RUNNING" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_SUSPENDED">
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+<code class="sig-name descname">S_SUSPENDED</code><em class="property"> = &lt;JobStatus: SUSPENDED, at 120775449648&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_SUSPENDED" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_TIMEOUT">
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+<code class="sig-name descname">S_TIMEOUT</code><em class="property"> = &lt;JobStatus: TIMEOUT, at 120775450208&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_TIMEOUT" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="attribute">
 <dt id="pymatgen.io.abinit.qjobs.QueueJob.S_UNKNOWN">
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+<code class="sig-name descname">S_UNKNOWN</code><em class="property"> = &lt;JobStatus: UNKNOWN, at 120775452304&gt;</em><a class="headerlink" href="#pymatgen.io.abinit.qjobs.QueueJob.S_UNKNOWN" title="Permalink to this definition">¶</a></dt>
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.qutils.html b/docs/pymatgen.io.abinit.qutils.html
index 03c8f4cecc7..05ef8c601d5 100644
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diff --git a/docs/pymatgen.io.abinit.scheduler_error_handlers.html b/docs/pymatgen.io.abinit.scheduler_error_handlers.html
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.scheduler_error_parsers.html b/docs/pymatgen.io.abinit.scheduler_error_parsers.html
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@@ -405,7 +404,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.tasks.html b/docs/pymatgen.io.abinit.tasks.html
index 8559bf54376..e3951413abe 100644
--- a/docs/pymatgen.io.abinit.tasks.html
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@@ -1420,7 +1419,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.utils.html b/docs/pymatgen.io.abinit.utils.html
index 3c109b33534..881e322264c 100644
--- a/docs/pymatgen.io.abinit.utils.html
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@@ -585,7 +584,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.works.html b/docs/pymatgen.io.abinit.works.html
index ae0c2a6e127..7e20f2bbfc1 100644
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@@ -840,7 +839,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.abinit.wrappers.html b/docs/pymatgen.io.abinit.wrappers.html
index 134effdd4fd..ec3b7ec649d 100644
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@@ -195,7 +194,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.adf.html b/docs/pymatgen.io.adf.html
index f6342de1651..8ef1ace3ad4 100644
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@@ -572,7 +571,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.aiida.html b/docs/pymatgen.io.aiida.html
index 2c7d5557469..6fd1a53aa24 100644
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@@ -97,7 +96,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.ase.html b/docs/pymatgen.io.ase.html
index 649e7839822..f4f4a78d9fe 100644
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@@ -131,7 +130,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.atat.html b/docs/pymatgen.io.atat.html
index 8de77ca74e4..ebbf472a5ca 100644
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@@ -123,7 +122,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.babel.html b/docs/pymatgen.io.babel.html
index 41bcfbafc0a..d7f9f20ab89 100644
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@@ -325,7 +324,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.io.cif.html b/docs/pymatgen.io.cif.html
index 35505db2018..63fa55d19b4 100644
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@@ -339,7 +338,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.io.cssr.html b/docs/pymatgen.io.cssr.html
index 1f57496941d..d3448113883 100644
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -44,6 +43,7 @@ <h3>Navigation</h3>
             
   <div class="section" id="module-pymatgen.io.cssr">
 <span id="pymatgen-io-cssr-module"></span><h1>pymatgen.io.cssr module<a class="headerlink" href="#module-pymatgen.io.cssr" title="Permalink to this headline">¶</a></h1>
+<p>This module provides input and output from the CSSR file format.</p>
 <dl class="class">
 <dt id="pymatgen.io.cssr.Cssr">
 <em class="property">class </em><code class="sig-name descname">Cssr</code><span class="sig-paren">(</span><em class="sig-param">structure</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/cssr.html#Cssr"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.cssr.Cssr" title="Permalink to this definition">¶</a></dt>
@@ -140,7 +140,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.exciting.html b/docs/pymatgen.io.exciting.html
index 282351a65b6..6bce3948d4e 100644
--- a/docs/pymatgen.io.exciting.html
+++ b/docs/pymatgen.io.exciting.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -116,7 +115,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.exciting.inputs.html b/docs/pymatgen.io.exciting.inputs.html
index a50c903f0ca..ffb9a398cc5 100644
--- a/docs/pymatgen.io.exciting.inputs.html
+++ b/docs/pymatgen.io.exciting.inputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -239,7 +238,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.feff.html b/docs/pymatgen.io.feff.html
index ddda4757e09..06b1b9d19cd 100644
--- a/docs/pymatgen.io.feff.html
+++ b/docs/pymatgen.io.feff.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -118,7 +117,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.feff.inputs.html b/docs/pymatgen.io.feff.inputs.html
index 8693e1d758f..37cb2a884d2 100644
--- a/docs/pymatgen.io.feff.inputs.html
+++ b/docs/pymatgen.io.feff.inputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -44,6 +43,10 @@ <h3>Navigation</h3>
             
   <div class="section" id="module-pymatgen.io.feff.inputs">
 <span id="pymatgen-io-feff-inputs-module"></span><h1>pymatgen.io.feff.inputs module<a class="headerlink" href="#module-pymatgen.io.feff.inputs" title="Permalink to this headline">¶</a></h1>
+<p>This module defines classes for reading/manipulating/writing the main sections
+of FEFF input file(feff.inp), namely HEADER, ATOMS, POTENTIAL and the program
+control tags.</p>
+<p>XANES and EXAFS input files, are available, for non-spin case at this time.</p>
 <dl class="class">
 <dt id="pymatgen.io.feff.inputs.Atoms">
 <em class="property">class </em><code class="sig-name descname">Atoms</code><span class="sig-paren">(</span><em class="sig-param">struct</em>, <em class="sig-param">absorbing_atom</em>, <em class="sig-param">radius</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/feff/inputs.html#Atoms"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.feff.inputs.Atoms" title="Permalink to this definition">¶</a></dt>
@@ -138,7 +141,7 @@ <h3>Navigation</h3>
 
 <dl class="exception">
 <dt id="pymatgen.io.feff.inputs.FeffParserError">
-<em class="property">exception </em><code class="sig-name descname">FeffParserError</code><span class="sig-paren">(</span><em class="sig-param">msg</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/feff/inputs.html#FeffParserError"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.feff.inputs.FeffParserError" title="Permalink to this definition">¶</a></dt>
+<em class="property">exception </em><code class="sig-name descname">FeffParserError</code><a class="reference internal" href="_modules/pymatgen/io/feff/inputs.html#FeffParserError"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.feff.inputs.FeffParserError" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Exception</span></code></p>
 <p>Exception class for Structure.
 Raised when the structure has problems, e.g., atoms that are too close.</p>
@@ -546,7 +549,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.feff.outputs.html b/docs/pymatgen.io.feff.outputs.html
index 901a32d6ace..cbd40522ee2 100644
--- a/docs/pymatgen.io.feff.outputs.html
+++ b/docs/pymatgen.io.feff.outputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -322,7 +321,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.feff.sets.html b/docs/pymatgen.io.feff.sets.html
index 8a99d190888..17bc9606d84 100644
--- a/docs/pymatgen.io.feff.sets.html
+++ b/docs/pymatgen.io.feff.sets.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -381,7 +380,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.fiesta.html b/docs/pymatgen.io.fiesta.html
index 0fa94042d1e..902d7c5bdf4 100644
--- a/docs/pymatgen.io.fiesta.html
+++ b/docs/pymatgen.io.fiesta.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -403,7 +402,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.gaussian.html b/docs/pymatgen.io.gaussian.html
index 5bec61797cd..f32dc8abbbd 100644
--- a/docs/pymatgen.io.gaussian.html
+++ b/docs/pymatgen.io.gaussian.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -649,7 +648,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.html b/docs/pymatgen.io.html
index 67869141e1b..e6df8aa433c 100644
--- a/docs/pymatgen.io.html
+++ b/docs/pymatgen.io.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -237,7 +236,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.lammps.data.html b/docs/pymatgen.io.lammps.data.html
index 12b2567e074..78030cc89b2 100644
--- a/docs/pymatgen.io.lammps.data.html
+++ b/docs/pymatgen.io.lammps.data.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -653,7 +652,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.lammps.html b/docs/pymatgen.io.lammps.html
index 431fec14b58..c16802a9091 100644
--- a/docs/pymatgen.io.lammps.html
+++ b/docs/pymatgen.io.lammps.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -117,7 +116,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.lammps.inputs.html b/docs/pymatgen.io.lammps.inputs.html
index aa0b45a5aca..c310697d770 100644
--- a/docs/pymatgen.io.lammps.inputs.html
+++ b/docs/pymatgen.io.lammps.inputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -236,7 +235,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.lammps.outputs.html b/docs/pymatgen.io.lammps.outputs.html
index 2007df527ce..9b78c4a93ea 100644
--- a/docs/pymatgen.io.lammps.outputs.html
+++ b/docs/pymatgen.io.lammps.outputs.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -164,7 +163,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.lammps.utils.html b/docs/pymatgen.io.lammps.utils.html
index 11f0e94c0ea..02b54632d03 100644
--- a/docs/pymatgen.io.lammps.utils.html
+++ b/docs/pymatgen.io.lammps.utils.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -225,7 +224,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.io.lmto.html b/docs/pymatgen.io.lmto.html
index 3af401199c9..2065f76ed37 100644
--- a/docs/pymatgen.io.lmto.html
+++ b/docs/pymatgen.io.lmto.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -208,7 +207,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.io.lobster.html b/docs/pymatgen.io.lobster.html
index 87d971145cd..bb9593ec959 100644
--- a/docs/pymatgen.io.lobster.html
+++ b/docs/pymatgen.io.lobster.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -581,7 +580,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.nwchem.html b/docs/pymatgen.io.nwchem.html
index a08e2a0d4b7..f315cad20e0 100644
--- a/docs/pymatgen.io.nwchem.html
+++ b/docs/pymatgen.io.nwchem.html
@@ -13,7 +13,6 @@
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@@ -374,7 +373,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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 Google Analytics</a> to collect statistics. You can disable it by blocking
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index 6fb2cbe2d1c..6e20a33a088 100644
--- a/docs/pymatgen.io.phonopy.html
+++ b/docs/pymatgen.io.phonopy.html
@@ -13,7 +13,6 @@
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@@ -240,7 +239,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 29725edaff8..7e996eb4523 100644
--- a/docs/pymatgen.io.prismatic.html
+++ b/docs/pymatgen.io.prismatic.html
@@ -13,7 +13,6 @@
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@@ -112,7 +111,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
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index 3e8f600c160..56429e1a7f2 100644
--- a/docs/pymatgen.io.pwscf.html
+++ b/docs/pymatgen.io.pwscf.html
@@ -13,7 +13,6 @@
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@@ -264,7 +263,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.io.qchem.html b/docs/pymatgen.io.qchem.html
index 6ac03b86d07..ddaa4d6476f 100644
--- a/docs/pymatgen.io.qchem.html
+++ b/docs/pymatgen.io.qchem.html
@@ -13,7 +13,6 @@
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@@ -118,7 +117,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.qchem.inputs.html b/docs/pymatgen.io.qchem.inputs.html
index abbff1cf9f9..f7d132169a1 100644
--- a/docs/pymatgen.io.qchem.inputs.html
+++ b/docs/pymatgen.io.qchem.inputs.html
@@ -13,7 +13,6 @@
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@@ -209,7 +208,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.io.qchem.outputs.html b/docs/pymatgen.io.qchem.outputs.html
index bd55739f5e4..64140aa07d5 100644
--- a/docs/pymatgen.io.qchem.outputs.html
+++ b/docs/pymatgen.io.qchem.outputs.html
@@ -13,7 +13,6 @@
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@@ -124,7 +123,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.io.qchem.sets.html b/docs/pymatgen.io.qchem.sets.html
index cc0efd6d2bd..d429153cb40 100644
--- a/docs/pymatgen.io.qchem.sets.html
+++ b/docs/pymatgen.io.qchem.sets.html
@@ -13,7 +13,6 @@
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@@ -49,6 +48,22 @@ <h3>Navigation</h3>
 <em class="property">class </em><code class="sig-name descname">FreqSet</code><span class="sig-paren">(</span><em class="sig-param">molecule</em>, <em class="sig-param">dft_rung=3</em>, <em class="sig-param">basis_set='def2-tzvppd'</em>, <em class="sig-param">pcm_dielectric=None</em>, <em class="sig-param">smd_solvent=None</em>, <em class="sig-param">custom_smd=None</em>, <em class="sig-param">scf_algorithm='diis'</em>, <em class="sig-param">max_scf_cycles=200</em>, <em class="sig-param">overwrite_inputs=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/qchem/sets.html#FreqSet"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.qchem.sets.FreqSet" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#pymatgen.io.qchem.sets.QChemDictSet" title="pymatgen.io.qchem.sets.QChemDictSet"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.io.qchem.sets.QChemDictSet</span></code></a></p>
 <p>QChemDictSet for a single point calculation</p>
+<p>Args:
+molecule (Pymatgen molecule object)
+job_type (str)
+basis_set (str)
+scf_algorithm (str)
+dft_rung (int)
+pcm_dielectric (str)
+max_scf_cycles (int)
+geom_opt_max_cycles (int)
+overwrite_inputs (dict): This is dictionary of QChem input sections to add or overwrite variables,
+the available sections are currently rem, pcm, and solvent. So the accepted keys are rem, pcm, or solvent
+and the value is a dictionary of key value pairs relevant to the section. An example would be adding a
+new variable to the rem section that sets symmetry to false.
+ex. overwrite_inputs = {“rem”: {“symmetry”: “false”}}
+<strong>*It should be noted that if something like basis is added to the rem dict it will overwrite
+the default basis.*</strong></p>
 </dd></dl>
 
 <dl class="class">
@@ -56,6 +71,22 @@ <h3>Navigation</h3>
 <em class="property">class </em><code class="sig-name descname">OptSet</code><span class="sig-paren">(</span><em class="sig-param">molecule</em>, <em class="sig-param">dft_rung=3</em>, <em class="sig-param">basis_set='def2-tzvppd'</em>, <em class="sig-param">pcm_dielectric=None</em>, <em class="sig-param">smd_solvent=None</em>, <em class="sig-param">custom_smd=None</em>, <em class="sig-param">scf_algorithm='diis'</em>, <em class="sig-param">max_scf_cycles=200</em>, <em class="sig-param">geom_opt_max_cycles=200</em>, <em class="sig-param">overwrite_inputs=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/qchem/sets.html#OptSet"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.qchem.sets.OptSet" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#pymatgen.io.qchem.sets.QChemDictSet" title="pymatgen.io.qchem.sets.QChemDictSet"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.io.qchem.sets.QChemDictSet</span></code></a></p>
 <p>QChemDictSet for a geometry optimization</p>
+<p>Args:
+molecule (Pymatgen molecule object)
+job_type (str)
+basis_set (str)
+scf_algorithm (str)
+dft_rung (int)
+pcm_dielectric (str)
+max_scf_cycles (int)
+geom_opt_max_cycles (int)
+overwrite_inputs (dict): This is dictionary of QChem input sections to add or overwrite variables,
+the available sections are currently rem, pcm, and solvent. So the accepted keys are rem, pcm, or solvent
+and the value is a dictionary of key value pairs relevant to the section. An example would be adding a
+new variable to the rem section that sets symmetry to false.
+ex. overwrite_inputs = {“rem”: {“symmetry”: “false”}}
+<strong>*It should be noted that if something like basis is added to the rem dict it will overwrite
+the default basis.*</strong></p>
 </dd></dl>
 
 <dl class="class">
@@ -96,6 +127,22 @@ <h3>Navigation</h3>
 <em class="property">class </em><code class="sig-name descname">SinglePointSet</code><span class="sig-paren">(</span><em class="sig-param">molecule</em>, <em class="sig-param">dft_rung=3</em>, <em class="sig-param">basis_set='def2-tzvppd'</em>, <em class="sig-param">pcm_dielectric=None</em>, <em class="sig-param">smd_solvent=None</em>, <em class="sig-param">custom_smd=None</em>, <em class="sig-param">scf_algorithm='diis'</em>, <em class="sig-param">max_scf_cycles=200</em>, <em class="sig-param">overwrite_inputs=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/io/qchem/sets.html#SinglePointSet"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.io.qchem.sets.SinglePointSet" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#pymatgen.io.qchem.sets.QChemDictSet" title="pymatgen.io.qchem.sets.QChemDictSet"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.io.qchem.sets.QChemDictSet</span></code></a></p>
 <p>QChemDictSet for a single point calculation</p>
+<p>Args:
+molecule (Pymatgen molecule object)
+job_type (str)
+basis_set (str)
+scf_algorithm (str)
+dft_rung (int)
+pcm_dielectric (str)
+max_scf_cycles (int)
+geom_opt_max_cycles (int)
+overwrite_inputs (dict): This is dictionary of QChem input sections to add or overwrite variables,
+the available sections are currently rem, pcm, and solvent. So the accepted keys are rem, pcm, or solvent
+and the value is a dictionary of key value pairs relevant to the section. An example would be adding a
+new variable to the rem section that sets symmetry to false.
+ex. overwrite_inputs = {“rem”: {“symmetry”: “false”}}
+<strong>*It should be noted that if something like basis is added to the rem dict it will overwrite
+the default basis.*</strong></p>
 </dd></dl>
 
 </div>
@@ -142,7 +189,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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index 40ea521582a..f6590fcdc47 100644
--- a/docs/pymatgen.io.qchem.utils.html
+++ b/docs/pymatgen.io.qchem.utils.html
@@ -13,7 +13,6 @@
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@@ -199,7 +198,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 218e9ff9377..6419a1ad5fb 100644
--- a/docs/pymatgen.io.shengbte.html
+++ b/docs/pymatgen.io.shengbte.html
@@ -13,7 +13,6 @@
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@@ -196,7 +195,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.vasp.html b/docs/pymatgen.io.vasp.html
index e377da99f31..4643e448bad 100644
--- a/docs/pymatgen.io.vasp.html
+++ b/docs/pymatgen.io.vasp.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -120,7 +119,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.vasp.inputs.html b/docs/pymatgen.io.vasp.inputs.html
index 02aa5a7be95..9d717a80812 100644
--- a/docs/pymatgen.io.vasp.inputs.html
+++ b/docs/pymatgen.io.vasp.inputs.html
@@ -13,7 +13,6 @@
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@@ -1261,7 +1260,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.io.vasp.outputs.html b/docs/pymatgen.io.vasp.outputs.html
index 15d6e1d272d..a3c1f43e3b5 100644
--- a/docs/pymatgen.io.vasp.outputs.html
+++ b/docs/pymatgen.io.vasp.outputs.html
@@ -13,7 +13,6 @@
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@@ -2084,7 +2083,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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index cdc00dfe04a..43cc28e8090 100644
--- a/docs/pymatgen.io.vasp.sets.html
+++ b/docs/pymatgen.io.vasp.sets.html
@@ -13,7 +13,6 @@
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@@ -1271,7 +1270,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 74c526b4553..34cedb49c57 100644
--- a/docs/pymatgen.io.xcrysden.html
+++ b/docs/pymatgen.io.xcrysden.html
@@ -13,7 +13,6 @@
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@@ -117,7 +116,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 4b14ab7a965..30716e7d6fd 100644
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+++ b/docs/pymatgen.io.xr.html
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@@ -176,7 +175,7 @@ <h3>Navigation</h3>
 
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 6940898e4d8..2b5ed42deab 100644
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+++ b/docs/pymatgen.io.xyz.html
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@@ -160,7 +159,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 9db63882f1d..6ffd578f2c7 100644
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+++ b/docs/pymatgen.io.zeopp.html
@@ -13,7 +13,6 @@
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@@ -341,7 +340,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index afae3b52a5f..e70178936e4 100644
--- a/docs/pymatgen.optimization.html
+++ b/docs/pymatgen.optimization.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -115,7 +114,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 23145554e25..3a75bbe028b 100644
--- a/docs/pymatgen.optimization.linear_assignment.html
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@@ -13,7 +13,6 @@
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@@ -111,7 +110,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
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-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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index 8b210ad9af8..fd6183e26e8 100644
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+++ b/docs/pymatgen.optimization.linear_assignment_numpy.html
@@ -13,7 +13,6 @@
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@@ -120,7 +119,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
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diff --git a/docs/pymatgen.phonon.bandstructure.html b/docs/pymatgen.phonon.bandstructure.html
index 423be26f633..d2b27628293 100644
--- a/docs/pymatgen.phonon.bandstructure.html
+++ b/docs/pymatgen.phonon.bandstructure.html
@@ -13,7 +13,6 @@
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@@ -360,7 +359,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.phonon.dos.html b/docs/pymatgen.phonon.dos.html
index d7321a84676..c6281685a3d 100644
--- a/docs/pymatgen.phonon.dos.html
+++ b/docs/pymatgen.phonon.dos.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -329,7 +328,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.phonon.html b/docs/pymatgen.phonon.html
index da46d836c65..08d4e94f9c3 100644
--- a/docs/pymatgen.phonon.html
+++ b/docs/pymatgen.phonon.html
@@ -13,7 +13,6 @@
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@@ -116,7 +115,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.phonon.plotter.html b/docs/pymatgen.phonon.plotter.html
index 857cdfbfdea..7ba7a0ca143 100644
--- a/docs/pymatgen.phonon.plotter.html
+++ b/docs/pymatgen.phonon.plotter.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -663,7 +662,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.symmetry.analyzer.html b/docs/pymatgen.symmetry.analyzer.html
index 5a2678f92c7..2c342942e09 100644
--- a/docs/pymatgen.symmetry.analyzer.html
+++ b/docs/pymatgen.symmetry.analyzer.html
@@ -13,7 +13,6 @@
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
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@@ -724,7 +723,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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diff --git a/docs/pymatgen.symmetry.bandstructure.html b/docs/pymatgen.symmetry.bandstructure.html
index 80db0dbfbd4..aa533e97142 100644
--- a/docs/pymatgen.symmetry.bandstructure.html
+++ b/docs/pymatgen.symmetry.bandstructure.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -44,6 +43,8 @@ <h3>Navigation</h3>
             
   <div class="section" id="module-pymatgen.symmetry.bandstructure">
 <span id="pymatgen-symmetry-bandstructure-module"></span><h1>pymatgen.symmetry.bandstructure module<a class="headerlink" href="#module-pymatgen.symmetry.bandstructure" title="Permalink to this headline">¶</a></h1>
+<p>Created on March 25, 2013</p>
+<p>&#64;author: geoffroy</p>
 <dl class="class">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath">
 <em class="property">class </em><code class="sig-name descname">HighSymmKpath</code><span class="sig-paren">(</span><em class="sig-param">structure</em>, <em class="sig-param">symprec=0.01</em>, <em class="sig-param">angle_tolerance=5</em>, <em class="sig-param">atol=1e-08</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath" title="Permalink to this definition">¶</a></dt>
@@ -77,17 +78,35 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.bcc">
 <code class="sig-name descname">bcc</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.bcc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.bcc" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Bcc HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.bctet1">
 <code class="sig-name descname">bctet1</code><span class="sig-paren">(</span><em class="sig-param">c</em>, <em class="sig-param">a</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.bctet1"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.bctet1" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>BCT1 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.bctet2">
 <code class="sig-name descname">bctet2</code><span class="sig-paren">(</span><em class="sig-param">c</em>, <em class="sig-param">a</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.bctet2"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.bctet2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>BCT2 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.conventional">
@@ -99,12 +118,24 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.cubic">
 <code class="sig-name descname">cubic</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.cubic"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.cubic" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Cubic HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.fcc">
 <code class="sig-name descname">fcc</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.fcc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.fcc" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Fcc HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.get_kpoints">
@@ -120,7 +151,13 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.hex">
 <code class="sig-name descname">hex</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.hex"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.hex" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Hexagonal HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.kpath">
@@ -132,62 +169,134 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mcl">
 <code class="sig-name descname">mcl</code><span class="sig-paren">(</span><em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">beta</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mcl"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mcl" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic 1 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mclc1">
 <code class="sig-name descname">mclc1</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mclc1"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc1" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic C1 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mclc2">
 <code class="sig-name descname">mclc2</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mclc2"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic C2 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mclc3">
 <code class="sig-name descname">mclc3</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mclc3"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc3" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic C3 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mclc4">
 <code class="sig-name descname">mclc4</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mclc4"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc4" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic C4 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.mclc5">
 <code class="sig-name descname">mclc5</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em>, <em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.mclc5"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.mclc5" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Monoclinic C5 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orc">
 <code class="sig-name descname">orc</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orc" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orcc">
 <code class="sig-name descname">orcc</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orcc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orcc" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic C HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orcf1">
 <code class="sig-name descname">orcf1</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orcf1"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf1" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic f1 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orcf2">
 <code class="sig-name descname">orcf2</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orcf2"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic f2 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orcf3">
 <code class="sig-name descname">orcf3</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orcf3"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orcf3" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic f3 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.orci">
 <code class="sig-name descname">orci</code><span class="sig-paren">(</span><em class="sig-param">a</em>, <em class="sig-param">b</em>, <em class="sig-param">c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.orci"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.orci" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Orthorhombic I HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.prim">
@@ -206,12 +315,24 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.rhl1">
 <code class="sig-name descname">rhl1</code><span class="sig-paren">(</span><em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.rhl1"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.rhl1" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Rhombohedral 1 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.rhl2">
 <code class="sig-name descname">rhl2</code><span class="sig-paren">(</span><em class="sig-param">alpha</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.rhl2"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.rhl2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Rhombohedral 2 HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.structure">
@@ -223,17 +344,35 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.tet">
 <code class="sig-name descname">tet</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.tet"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.tet" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Tetragonal HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.tria">
 <code class="sig-name descname">tria</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.tria"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.tria" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Trigonal a HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 <dl class="method">
 <dt id="pymatgen.symmetry.bandstructure.HighSymmKpath.trib">
 <code class="sig-name descname">trib</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/bandstructure.html#HighSymmKpath.trib"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.bandstructure.HighSymmKpath.trib" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Trigonal b HighSymmKPath</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p>Dict</p>
+</dd>
+</dl>
+</dd></dl>
 
 </dd></dl>
 
@@ -281,7 +420,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.symmetry.groups.html b/docs/pymatgen.symmetry.groups.html
index de24d36d5db..0af41ab956f 100644
--- a/docs/pymatgen.symmetry.groups.html
+++ b/docs/pymatgen.symmetry.groups.html
@@ -13,10 +13,9 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-
+ 
 <script type="text/javascript">
   var _gaq = _gaq || [];
   _gaq.push(['_setAccount', 'UA-33990148-1']);
@@ -33,17 +32,20 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li> 
       </ul>
-    </div>
+    </div>  
 
     <div class="document">
       <div class="documentwrapper">
         <div class="bodywrapper">
           <div class="body" role="main">
-
+            
   <div class="section" id="module-pymatgen.symmetry.groups">
 <span id="pymatgen-symmetry-groups-module"></span><h1>pymatgen.symmetry.groups module<a class="headerlink" href="#module-pymatgen.symmetry.groups" title="Permalink to this headline">¶</a></h1>
+<p>Defines SymmetryGroup parent class and PointGroup and SpaceGroup classes.
+Shyue Ping Ong thanks Marc De Graef for his generous sharing of his
+SpaceGroup data as published in his textbook “Structure of Materials”.</p>
 <dl class="class">
 <dt id="pymatgen.symmetry.groups.PointGroup">
 <em class="property">class </em><code class="sig-name descname">PointGroup</code><span class="sig-paren">(</span><em class="sig-param">*args</em>, <em class="sig-param">**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/groups.html#PointGroup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.groups.PointGroup" title="Permalink to this definition">¶</a></dt>
@@ -106,6 +108,7 @@ <h3>Navigation</h3>
 <dt id="pymatgen.symmetry.groups.SymmetryGroup">
 <em class="property">class </em><code class="sig-name descname">SymmetryGroup</code><a class="reference internal" href="_modules/pymatgen/symmetry/groups.html#SymmetryGroup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.groups.SymmetryGroup" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">collections.abc.Sequence</span></code></p>
+<p>Abstract class representation a symmetry group.</p>
 <dl class="method">
 <dt id="pymatgen.symmetry.groups.SymmetryGroup.is_subgroup">
 <code class="sig-name descname">is_subgroup</code><span class="sig-paren">(</span><em class="sig-param">supergroup</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/groups.html#SymmetryGroup.is_subgroup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.groups.SymmetryGroup.is_subgroup" title="Permalink to this definition">¶</a></dt>
@@ -137,14 +140,15 @@ <h3>Navigation</h3>
 <dl class="method">
 <dt id="pymatgen.symmetry.groups.SymmetryGroup.symmetry_ops">
 <em class="property">abstract property </em><code class="sig-name descname">symmetry_ops</code><a class="headerlink" href="#pymatgen.symmetry.groups.SymmetryGroup.symmetry_ops" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
+<dd><p>List of symmetry operations</p>
+<dl class="field-list simple">
+<dt class="field-odd">Type</dt>
+<dd class="field-odd"><p>return</p>
+</dd>
+</dl>
 </dd></dl>
 
-<dl class="function">
-<dt id="pymatgen.symmetry.groups._get_symm_data">
-<code class="sig-name descname">_get_symm_data</code><span class="sig-paren">(</span><em class="sig-param">name</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/groups.html#_get_symm_data"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.groups._get_symm_data" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+</dd></dl>
 
 <dl class="function">
 <dt id="pymatgen.symmetry.groups.in_array_list">
@@ -223,13 +227,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">pymatgen 2019.9.16 documentation</a> &#187;</li> 
       </ul>
     </div>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
 Google Analytics</a> to collect statistics. You can disable it by blocking
diff --git a/docs/pymatgen.symmetry.html b/docs/pymatgen.symmetry.html
index cf6e45169c6..a4a1a4b86dd 100644
--- a/docs/pymatgen.symmetry.html
+++ b/docs/pymatgen.symmetry.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script type="text/javascript" src="_static/language_data.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
  
@@ -122,7 +121,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
 <div class="footer">This page uses <a href="http://analytics.google.com/">
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diff --git a/docs/pymatgen.symmetry.maggroups.html b/docs/pymatgen.symmetry.maggroups.html
index 957f1593897..645b9a2ddfa 100644
--- a/docs/pymatgen.symmetry.maggroups.html
+++ b/docs/pymatgen.symmetry.maggroups.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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@@ -96,7 +95,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.symmetry.settings.html b/docs/pymatgen.symmetry.settings.html
index 43258962b15..4d6423f2a7b 100644
--- a/docs/pymatgen.symmetry.settings.html
+++ b/docs/pymatgen.symmetry.settings.html
@@ -13,7 +13,6 @@
     <script type="text/javascript" src="_static/doctools.js"></script>
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     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
-    <link rel="shortcut icon" href="_static/favicon.ico"/>
     <link rel="index" title="Index" href="genindex.html" />
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@@ -202,7 +201,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
     </div>
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index ca2b3fdc96a..2628f6ccbb4 100644
--- a/docs/pymatgen.symmetry.site_symmetries.html
+++ b/docs/pymatgen.symmetry.site_symmetries.html
@@ -13,7 +13,6 @@
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@@ -125,7 +124,7 @@ <h3>Navigation</h3>
 
     <div class="footer" role="contentinfo">
         &#169; Copyright 2011, Pymatgen Development Team.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.1.2.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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diff --git a/docs/pymatgen.symmetry.structure.html b/docs/pymatgen.symmetry.structure.html
index e34238cbdf3..2e2414a8f37 100644
--- a/docs/pymatgen.symmetry.structure.html
+++ b/docs/pymatgen.symmetry.structure.html
@@ -13,7 +13,6 @@
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@@ -62,6 +61,43 @@ <h3>Navigation</h3>
 </ul>
 </dd>
 </dl>
+<p>Create a periodic structure.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>lattice</strong> – The lattice, either as a pymatgen.core.lattice.Lattice or
+simply as any 2D array. Each row should correspond to a lattice
+vector. E.g., [[10,0,0], [20,10,0], [0,0,30]] specifies a
+lattice with lattice vectors [10,0,0], [20,10,0] and [0,0,30].</p></li>
+<li><p><strong>species</strong> – <p>List of species on each site. Can take in flexible input,
+including:</p>
+<ol class="lowerroman simple">
+<li><p>A sequence of element / specie specified either as string
+symbols, e.g. [“Li”, “Fe2+”, “P”, …] or atomic numbers,
+e.g., (3, 56, …) or actual Element or Specie objects.</p></li>
+<li><p>List of dict of elements/species and occupancies, e.g.,
+[{“Fe” : 0.5, “Mn”:0.5}, …]. This allows the setup of
+disordered structures.</p></li>
+</ol>
+</p></li>
+<li><p><strong>coords</strong> (<em>Nx3 array</em>) – list of fractional/cartesian coordinates of
+each species.</p></li>
+<li><p><strong>charge</strong> (<em>int</em>) – overall charge of the structure. Defaults to behavior
+in SiteCollection where total charge is the sum of the oxidation
+states.</p></li>
+<li><p><strong>validate_proximity</strong> (<em>bool</em>) – Whether to check if there are sites
+that are less than 0.01 Ang apart. Defaults to False.</p></li>
+<li><p><strong>to_unit_cell</strong> (<em>bool</em>) – Whether to map all sites into the unit cell,
+i.e., fractional coords between 0 and 1. Defaults to False.</p></li>
+<li><p><strong>coords_are_cartesian</strong> (<em>bool</em>) – Set to True if you are providing
+coordinates in cartesian coordinates. Defaults to False.</p></li>
+<li><p><strong>site_properties</strong> (<em>dict</em>) – Properties associated with the sites as a
+dict of sequences, e.g., {“magmom”:[5,5,5,5]}. The sequences
+have to be the same length as the atomic species and
+fractional_coords. Defaults to None for no properties.</p></li>
+</ul>
+</dd>
+</dl>
 <dl class="method">
 <dt id="pymatgen.symmetry.structure.SymmetrizedStructure.find_equivalent_sites">
 <code class="sig-name descname">find_equivalent_sites</code><span class="sig-paren">(</span><em class="sig-param">site</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/symmetry/structure.html#SymmetrizedStructure.find_equivalent_sites"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.symmetry.structure.SymmetrizedStructure.find_equivalent_sites" title="Permalink to this definition">¶</a></dt>
@@ -125,7 +161,7 @@ <h3>Navigation</h3>
 
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index 72c5a5b1e4e..21e56c44efd 100644
--- a/docs/pymatgen.transformations.advanced_transformations.html
+++ b/docs/pymatgen.transformations.advanced_transformations.html
@@ -13,7 +13,6 @@
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@@ -1093,7 +1092,7 @@ <h3>Navigation</h3>
 
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index 4717d9158fd..9a1745b6742 100644
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+++ b/docs/pymatgen.transformations.defect_transformations.html
@@ -13,7 +13,6 @@
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@@ -134,7 +133,7 @@ <h3>Navigation</h3>
 
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index dd1fdcf4a41..5d4676c1767 100644
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@@ -120,7 +119,7 @@ <h3>Navigation</h3>
 
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index a91440b7137..2f5715bd29f 100644
--- a/docs/pymatgen.transformations.site_transformations.html
+++ b/docs/pymatgen.transformations.site_transformations.html
@@ -13,7 +13,6 @@
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@@ -496,7 +495,7 @@ <h3>Navigation</h3>
 
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index a8016411f5e..de177d29fa9 100644
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@@ -13,7 +13,6 @@
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index d9493262475..7aa2f2e2b6f 100644
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@@ -13,7 +13,6 @@
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index 8bb3e965d18..3e28d616879 100644
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@@ -239,7 +238,7 @@ <h3>Navigation</h3>
 
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index f1ffc438db0..65a1c31e8ed 100644
--- a/docs/pymatgen.util.coord.html
+++ b/docs/pymatgen.util.coord.html
@@ -13,7 +13,6 @@
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@@ -439,7 +438,7 @@ <h3>Navigation</h3>
 
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index 21ca8fe5e8d..8599fe9abdd 100644
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@@ -13,7 +13,6 @@
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@@ -292,7 +291,7 @@ <h3>Navigation</h3>
 
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+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.0.
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index 791cc2c0dd8..2e355354aef 100644
--- a/docs/pymatgen.util.sequence.html
+++ b/docs/pymatgen.util.sequence.html
@@ -13,7 +13,6 @@
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@@ -109,7 +108,7 @@ <h3>Navigation</h3>
 
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index 2374e006326..3168cb713bb 100644
--- a/docs/pymatgen.util.serialization.html
+++ b/docs/pymatgen.util.serialization.html
@@ -13,7 +13,6 @@
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@@ -174,7 +173,7 @@ <h3>Navigation</h3>
 
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index d8d0618af2c..ecf827f2971 100644
--- a/docs/pymatgen.util.string.html
+++ b/docs/pymatgen.util.string.html
@@ -13,7 +13,6 @@
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@@ -251,7 +250,7 @@ <h3>Navigation</h3>
 
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index 6051f98de2b..a2a19ff6e19 100644
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+++ b/docs/pymatgen.util.testing.html
@@ -13,7 +13,6 @@
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@@ -190,7 +189,7 @@ <h3>Navigation</h3>
 
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index 5920b1470e4..acdd3c4ec12 100644
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+++ b/docs/pymatgen.util.typing.html
@@ -13,7 +13,6 @@
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@@ -88,7 +87,7 @@ <h3>Navigation</h3>
 
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index 5c538564fa0..f770b01ee77 100644
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@@ -13,7 +13,6 @@
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@@ -118,7 +117,7 @@ <h3>Navigation</h3>
 
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index e7b511a950a..27fab1bdf61 100644
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+++ b/docs/pymatgen.vis.plotters.html
@@ -13,7 +13,6 @@
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index 30373829a1f..65ab60bce33 100644
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+++ b/docs/pymatgen.vis.structure_chemview.html
@@ -13,7 +13,6 @@
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@@ -111,7 +110,7 @@ <h3>Navigation</h3>
 
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index df59a31d9cc..4e5df9d1fc0 100644
--- a/docs/pymatgen.vis.structure_vtk.html
+++ b/docs/pymatgen.vis.structure_vtk.html
@@ -13,7 +13,6 @@
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@@ -60,6 +59,47 @@ <h3>Navigation</h3>
 <dt id="pymatgen.vis.structure_vtk.MultiStructuresVis">
 <em class="property">class </em><code class="sig-name descname">MultiStructuresVis</code><span class="sig-paren">(</span><em class="sig-param">element_color_mapping=None</em>, <em class="sig-param">show_unit_cell=True</em>, <em class="sig-param">show_bonds=False</em>, <em class="sig-param">show_polyhedron=False</em>, <em class="sig-param">poly_radii_tol_factor=0.5</em>, <em class="sig-param">excluded_bonding_elements=None</em>, <em class="sig-param">animated_movie_options={'looping_type': 'restart'</em>, <em class="sig-param">'number_of_loops': 1</em>, <em class="sig-param">'time_between_frames': 0.1</em>, <em class="sig-param">'time_between_loops': 1.0}</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/pymatgen/vis/structure_vtk.html#MultiStructuresVis"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pymatgen.vis.structure_vtk.MultiStructuresVis" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#pymatgen.vis.structure_vtk.StructureVis" title="pymatgen.vis.structure_vtk.StructureVis"><code class="xref py py-class docutils literal notranslate"><span class="pre">pymatgen.vis.structure_vtk.StructureVis</span></code></a></p>
+<p>Constructs a Structure Visualization.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>element_color_mapping</strong> – Optional color mapping for the elements,
+as a dict of {symbol: rgb tuple}. For example, {“Fe”: (255,
+123,0), ….} If None is specified, a default based on
+Jmol”s color scheme is used.</p></li>
+<li><p><strong>show_unit_cell</strong> – Set to False to not show the unit cell
+boundaries. Defaults to True.</p></li>
+<li><p><strong>show_bonds</strong> – Set to True to show bonds. Defaults to True.</p></li>
+<li><p><strong>show_polyhedron</strong> – Set to True to show polyhedrons. Defaults to
+False.</p></li>
+<li><p><strong>poly_radii_tol_factor</strong> – The polyhedron and bonding code uses the
+ionic radii of the elements or species to determine if two
+atoms are bonded. This specifies a tolerance scaling factor
+such that atoms which are (1 + poly_radii_tol_factor) * sum
+of ionic radii apart are still considered as bonded.</p></li>
+<li><p><strong>excluded_bonding_elements</strong> – List of atom types to exclude from
+bonding determination. Defaults to an empty list. Useful
+when trying to visualize a certain atom type in the
+framework (e.g., Li in a Li-ion battery cathode material).</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="simple">
+<dt>Useful keyboard shortcuts implemented.</dt><dd><p>h : Show help
+A/a : Increase/decrease cell by one unit vector in a-direction
+B/b : Increase/decrease cell by one unit vector in b-direction
+C/c : Increase/decrease cell by one unit vector in c-direction
+# : Toggle showing of polyhedrons
+- : Toggle showing of bonds
+[ : Decrease poly_radii_tol_factor by 0.05
+] : Increase poly_radii_tol_factor by 0.05
+r : Reset camera direction
+o : Orthogonalize structure
+Up/Down : Rotate view along Up direction by 90 clock/anticlockwise
+Left/right : Rotate view along camera direction by 90
+clock/anticlockwise</p>
+</dd>
+</dl>
 <dl class="attribute">
 <dt id="pymatgen.vis.structure_vtk.MultiStructuresVis.DEFAULT_ANIMATED_MOVIE_OPTIONS">
 <code class="sig-name descname">DEFAULT_ANIMATED_MOVIE_OPTIONS</code><em class="property"> = {'looping_type': 'restart', 'number_of_loops': 1, 'time_between_frames': 0.1, 'time_between_loops': 1.0}</em><a class="headerlink" href="#pymatgen.vis.structure_vtk.MultiStructuresVis.DEFAULT_ANIMATED_MOVIE_OPTIONS" title="Permalink to this definition">¶</a></dt>
@@ -470,7 +510,7 @@ <h3>Navigation</h3>
 
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@@ -13,7 +13,6 @@
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@@ -15,7 +15,6 @@
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@@ -62,7 +61,7 @@ <h1 id="search-documentation">Search</h1>
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+++ b/docs/searchindex.js
@@ -1 +1 @@
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130,131,133,136,137,138,139,140,141,142,143,148,149,150,151,152,153,154,156,157,158,159,164,167,168,169,170,171,173,175,176,177,178,181,184,185,186,187,188,190,192,193,196,198,199,200,201,202,204,205,208,209,210,211,213,217,218,219,221,222,223,224,225,227,232,234,236,238,244,246,247,251,253,254,255,259,260,263,264,265],"enum":[0,3,63,71,124,134,137,152,168,221,244],"export":[2,3,158,175,204,226,256],"fe\u2082o\u2083":259,"final":[0,3,14,36,38,46,58,68,78,82,83,84,88,94,123,124,127,133,141,157,164,173,177,184,185,186,188,202,207,218,222,223,244,255,268],"float":[0,1,8,9,12,15,18,34,36,37,38,41,42,44,45,46,47,48,50,51,53,54,55,58,63,64,67,68,69,71,72,73,78,80,81,82,83,84,85,87,90,91,92,93,95,100,101,102,124,126,128,130,131,133,136,137,138,139,140,141,142,143,144,148,149,151,152,153,154,156,157,158,163,164,167,180,181,188,192,193,198,200,204,205,207,209,210,211,213,218,219,221,222,223,225,227,234,236,237,238,240,241,244,247,251,254,255,259,263,264,265],"function":[0,1,2,3,10,12,14,18,27,28,30,37,41,42,48,50,51,54,55,59,60,61,63,64,67,68,69,71,77,78,81,82,84,85,88,89,92,100,108,122,127,131,133,134,135,137,139,140,141,142,143,144,145,148,149,150,152,153,154,156,158,164,167,168,170,171,173,175,177,178,183,184,185,186,188,192,193,198,199,202,207,209,210,213,218,221,222,223,227,230,232,233,234,238,244,250,253,254,255,259,260,263,264,266,267,268],"gra\u017euli":161,"import":[0,1,2,3,55,60,61,64,69,133,140,149,158,169,173,177,178,179,181,184,220,221,226,244,256,268],"int":[0,10,12,18,36,37,42,44,47,48,50,54,55,58,60,61,63,64,67,69,71,80,81,84,85,87,91,92,94,107,127,128,131,133,136,137,138,140,141,142,143,148,149,151,153,154,161,163,164,173,175,177,178,180,188,192,198,199,200,204,205,206,207,208,209,210,217,219,221,222,223,236,238,244,246,247,255,259,265],"j\u00f3nsson":266,"jes\u00fa":150,"long":[0,1,37,75,137,218,222,268],"lua\u00f1a":124,"mart\u00edn":124,"n\u00f8rskov":145,"new":[0,1,3,9,10,36,41,44,47,48,54,55,59,60,63,64,67,76,77,85,88,89,90,101,103,124,133,140,141,142,144,150,152,154,164,167,168,169,173,175,177,178,180,184,185,186,187,188,202,209,215,217,221,222,223,234,247,255,256,268],"null":69,"okuli\u010d":161,"pend\u00e1":124,"public":[1,2,13,37,48,141,184,223,255,266],"quir\u00f3":161,"return":[0,1,2,6,8,9,10,12,13,14,15,18,19,21,23,24,28,31,34,36,37,38,39,41,42,44,45,46,47,48,50,51,52,53,54,55,58,60,61,63,64,67,68,69,71,72,73,74,76,77,78,80,81,82,83,84,85,87,88,89,90,91,92,94,95,100,101,102,103,104,106,107,123,124,126,127,128,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,148,149,150,151,152,153,154,156,157,158,159,161,162,164,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,190,191,192,193,194,196,198,199,200,201,202,204,206,207,208,209,210,211,212,213,218,219,221,222,223,224,225,226,227,230,232,233,234,236,237,238,240,241,242,244,245,246,247,248,250,251,252,253,254,255,256,258,259,260,263,264],"rodr\u00edguez":136,"short":[37,69,130,173,223,227],"static":[0,9,10,63,64,68,69,72,73,75,77,81,82,83,84,88,92,94,102,130,131,133,136,137,142,149,152,164,168,178,180,183,185,188,190,191,192,193,194,196,198,199,200,202,209,210,213,215,216,221,222,223,225,226,227,240,244,247,255,256,260,268],"super":[64,91,139,141,185],"switch":[0,1,154,173,184,244],"throw":[50,79,222,247],"transient":164,"true":[8,9,10,12,14,18,19,21,23,24,28,32,36,37,38,41,42,44,45,46,48,50,53,54,58,60,61,63,64,67,68,69,71,73,74,75,77,78,79,81,82,85,88,89,90,92,94,95,100,101,102,103,106,124,125,126,128,131,133,134,136,137,138,140,141,142,143,148,149,150,151,152,153,154,156,158,164,167,168,169,170,173,175,176,177,178,182,183,184,185,186,187,188,192,193,198,200,201,202,204,205,207,208,209,211,216,218,221,222,223,225,232,234,236,237,238,244,246,247,248,250,251,252,253,254,255,259,260,264,265],"try":[0,3,9,40,50,60,64,71,124,149,153,164,175,178,184,221,222,244,265],"var":[173,184],"void":[0,227],"while":[8,18,23,28,38,58,63,69,74,75,92,100,140,141,154,185,186,204,206,221,222,227,247,268],AND:[2,8,137,141,185,222,223],ASE:[0,3,54,190],Added:0,And:[1,69,222],Axes:[44,54,154,169,173,255],BNS:140,BUT:2,Bus:180,But:[0,2,42,63,227,236,244,246,268],DLS:90,DOS:[0,111,139,149,150,153,154,164,186,209,233,234,263],Dos:[41,149,150,153,154,164,209,211,233,234,263,268],ECs:50,EOS:[0,54],EPS:[154,202,234,263],FMS:200,FOR:[2,141],For:[0,1,2,3,8,9,15,18,23,28,34,36,37,42,46,47,48,50,58,63,64,67,69,78,83,84,85,87,91,92,93,94,101,102,103,106,124,126,130,131,132,133,136,137,140,141,144,145,149,152,153,154,156,157,158,159,160,162,164,168,169,171,178,182,186,192,202,205,209,210,213,218,221,222,223,227,236,238,244,246,247,256,262,263,265,266,268],GBs:[63,141,244],Gus:[0,3,246],Has:[41,78,106,140,198,222,247],IDE:1,IDs:164,Ising:53,Its:[173,211],MOs:135,NOT:[2,34,36,42,64,78,204,222,223],Near:164,Not:[3,78,140,168,180,204,244],ONE:204,OPs:[0,69],OSes:3,One:[2,28,48,59,101,154,167,168,177,221,222,227,234,236,244],PBS:[180,183,184],PDs:[0,78,92],POS:208,PRs:0,Pls:0,QPS:184,RLS:90,RMS:[0,85],SQS:[127,244],Such:75,Sys:180,THE:[2,141],THe:153,That:[63,69,84,139],The:[0,1,2,3,6,8,9,10,12,13,15,18,19,21,23,24,28,35,38,39,40,41,42,44,45,46,47,48,50,53,54,55,58,60,61,63,64,66,67,68,69,74,75,77,78,79,81,82,83,84,85,87,88,89,91,92,93,94,95,101,102,103,104,105,106,107,123,124,127,130,131,132,133,135,136,137,138,139,140,141,143,144,145,146,148,149,150,151,152,153,154,156,157,161,162,163,164,167,168,172,173,175,176,177,178,179,180,181,183,184,185,186,188,190,192,193,198,199,200,201,202,204,205,206,207,208,209,210,211,213,215,218,221,222,223,227,229,230,232,233,234,235,236,237,238,243,244,246,247,249,253,254,255,256,260,262,263,265,266],Their:[74,130],Then:[1,3,72,236,260],There:[0,1,2,64,89,92,106,133,140,141,148,152,175,209,232,244,268],These:[2,19,48,50,55,64,78,94,162,164,193,202,209,222,223,268],USE:[2,247],Use:[0,1,2,44,45,46,47,50,55,64,69,94,131,134,136,138,140,141,152,156,158,162,164,167,168,173,175,177,178,186,192,221,223,244,246,247,256,265],Used:[47,53,78,92,123,143,149,152,173,200,202,222,240,247],Useful:[0,2,36,47,63,81,85,92,95,124,131,138,140,141,144,152,154,164,167,173,178,184,198,205,213,221,222,227,236,247,265],Uses:[10,37,54,69,92,94,107,167,168,192,213,221,222,223,236,254],Using:[67,140,145,156,162,164],WILL:141,WITH:[2,141,148,232,247],Will:[0,55,64,71,73,141,198,209,244,247,259],With:[0,1,2,3,69,193,236,250],XAS:[0,263],XES:200,Yes:185,__abinitflow__:173,__call__:67,__class__:[177,268],__eq__:260,__future__:1,__getitem__:131,__hash__:0,__init__:[10,50,51,52,63,76,79,80,139,140,141,142,161,172,173,215,223],__main__:0,__module__:268,__name__:[0,177,268],__new__:[50,51,52,76,79,80,142,144],__rmul__:0,__slots__:258,__str__:[198,202,215,221],_additional_condit:18,_angle_cutoff:18,_bp:222,_calculate_possible_shift:141,_cgraph:0,_continuous_symmetry_measure_cutoff:18,_defect_sit:3,_del:200,_den:[184,185],_distance_cutoff:18,_ev:222,_extrema_df:42,_get_nn_shell_info:69,_io:[169,173,177,178],_map:78,_materialsproject:[164,256],_matrix:55,_parse_bool:221,_parse_float:221,_parse_int:221,_parse_list:221,_parse_str:221,_path:168,_pickl:258,_proj_height:141,_reset:184,_set:223,_setup:186,_site:140,_sp:89,_threshold:89,a1604:50,a1826:50,a1fdb1089d0727f415416ec8082246ba:223,a1fit:188,a2b2:0,a2c9485ea86b2a7cf175077e6e5c7b3:223,a32:63,a35:69,a38:63,a395eb3aaf2fcab12fac3030a1146f61:223,a40:63,a45:63,a604ea3c6a9cc23c739b762f625cf449:223,a67:223,a6fd9a46aec185f4ad2acd0cbe4ae2fa:223,a74:223,a9182d436a13194b744640ac940ab9b0:223,a_1:[133,140,222],a_1a:222,a_1c:222,a_1p:222,a_2:[133,140],a_3:[133,140],a_i:46,a_pw:222,a_tot:222,a_vib:82,a_xb_1:13,a_xi:254,a_xx:254,a_xz:254,a_yi:254,a_yz:254,a_zz:254,aa_i:28,ab_shift:[63,67,244],abandon:0,abbrevi:[71,150,233],abc3:131,abc:[2,44,51,54,101,131,133,138,140,142,144,154,158,167,169,173,178,184,185,198,234,238,246,247,260],abcd:28,abcdefghijklmnopqrstuvwxyz0123456789:250,abcissa:202,abi_extens:185,abi_splitext:185,abicrit:[177,184],abiinput:172,abiinspect:[5,6,165,166],abil:[0,41],abinit:[0,2,5,6,133,145,164,165,267],abinit_build:184,abinitbuild:184,abinitcriticalwarn:172,abiniterror:172,abinitev:[172,177],abinitflow:185,abinithead:176,abinitinput:[173,184,186],abinitio:0,abinitixc_to_libxc:145,abinittask:[173,184,186],abinittim:169,abinittimerpars:[169,173,184,186],abinittimerparsererror:169,abinittimersect:169,abiobject:[5,6,165,166],abiopen:177,abipi:[170,173,175,184,186],abirun:[170,173],abitim:[5,6,165,166],abivalid:173,abivalidate_input:173,abivar:[63,133,140,168],abl:[3,41,63,74,137,167,244],abo3:[78,268],abo:[169,184],abo_:184,aborpt:199,abort:[172,180],about:[0,1,21,23,28,34,63,67,69,92,124,136,140,141,145,148,149,153,209,222,226,256],abov:[1,2,3,12,14,18,50,61,67,68,73,78,81,82,141,168,223,247,268],abs:[81,131,153,222,244,251,254],abs_cap:254,abs_tol:153,abscissa:202,absenc:193,absent:50,absent_sym:50,absolut:[1,2,28,36,44,45,46,71,78,101,131,136,141,142,144,153,173,175,177,184,185,186,187,199,222,223,236,237,251,254],absorb:[141,164,198,199,200,244],absorbing_atom:[198,199,200],absorbing_el:164,absorpt:[0,141,164,199,200,222,263],absorption_speci:97,abstractchemenvalgorithm:19,abstractchemenverror:27,abstractchemenvstrategi:18,abstractcompar:85,abstractdiffractionpatterncalcul:[44,45,46],abstractdron:[106,107],abstractelectrod:[101,102,103,104],abstracterror:183,abstracterrorpars:183,abstractfeffinputset:200,abstractgeometri:21,abstractmolatommapp:74,abstractratiofunct:30,abstractstructurefilt:[8,9],abstracttransform:[244,245,246,247,248],abstractvoltagepair:[101,102,103],abund:18,ac_:3,acc_err:149,acc_factor:[53,55],acc_thr:149,acceler:266,accept:[1,10,133,152,153,168,173,177,178,181,184,186,204,217,222,234,246,247,251,255],acceptor:37,access:[0,26,69,161,164,173,178,180,185,209,213,218,221,222,247,253],accommod:100,accomod:141,accord:[12,19,48,50,51,52,67,69,76,78,79,80,81,92,130,137,140,142,148,149,169,176,178,184,204,207,211,222,232,236,254],accordingli:[47,75,141],account:[0,1,19,36,41,42,46,69,71,92,133,135,140,141,148,149,150,173,186,222,232,236,251,252],accur:[0,63,64,71,149,164,222,223,244,246],accuraci:[0,55,149,170,178,223,227,246,247],acel:[133,168],acet:61,achiev:[142,149,173,219,247],acid:161,acknowledg:[2,75,222,266],aconvasp:[3,122],aconvasp_cal:[3,5,6,121],aconvasperror:122,acoust:[80,232],across:[69,78,101,102,103,131,200,223],acs:[21,41,71,81,162],act:[84,136],acta:[19,63,69,133],actanid:[131,137],actinoid:[131,137],action:[0,2,4,172,177,180],activ:[2,3,73,95,100,152,180,186,255],actual:[0,8,41,42,55,58,60,63,64,67,69,78,100,109,133,137,138,140,141,143,157,162,173,198,201,213,221,222,236,246,247,248,260,268],actual_kpoint:222,actual_kpoints_weight:222,adam:133,adap:37,adapt:[1,3,37,54,71,92,173,182,210,255],adaptor:[0,125,189,190,192,268],add:[0,1,3,9,10,12,15,21,23,28,44,50,51,54,55,60,63,64,67,73,78,92,104,131,139,140,141,143,150,151,154,158,164,167,169,173,175,177,185,186,188,192,211,215,217,221,223,227,234,244,246,255,258,263,265,268],add_adsorb:12,add_adsorbate_atom:141,add_bond:265,add_charges_from_oxi_state_guess:131,add_cohp:154,add_cohp_dict:154,add_com:175,add_config_var:116,add_coord_geom:23,add_dens:153,add_dep:177,add_do:[154,234],add_dos_dict:[154,234],add_edg:[64,265],add_electrod:104,add_emptylin:175,add_eq:50,add_error:184,add_fac:265,add_fig_kwarg:[154,255],add_filechild:177,add_flow:175,add_gg_gap:174,add_hydrogen:192,add_label_cycl:167,add_lin:[175,265],add_m_list:55,add_neighbors_set:23,add_opposit:19,add_opt:188,add_oxidation_st:55,add_oxidation_state_by_el:140,add_oxidation_state_by_guess:140,add_oxidation_state_by_sit:140,add_oxidation_state_by_site_fract:15,add_partial_spher:265,add_pick:265,add_picker_fix:265,add_polyhedron:265,add_sit:265,add_site_properti:140,add_sourc:23,add_spectra:263,add_spectrum:263,add_spin_by_el:140,add_spin_by_sit:140,add_strategy_visualization_to_subplot:18,add_subkei:188,add_tag:10,add_text:265,add_triangl:265,addadsorbatetransform:244,addditiona:186,added:[0,2,3,9,23,36,40,42,47,51,61,64,90,101,131,141,154,164,170,173,177,185,186,192,204,211,217,223,234,244,246,259,264,268],added_kpoint:223,adding:[12,61,140,141,184,217,223,244,268],addit:[0,2,3,9,10,18,21,23,29,36,42,54,60,63,64,67,83,91,126,131,132,136,139,140,141,144,157,164,173,176,193,202,204,210,211,223,227,232,244,256,259],addition:[14,223],additional_argu:2,additional_condit:[18,21,23,24,26],additional_info:[18,19],additionalcondit:[18,23,24,29],additionalconditionint:18,addon:92,address:[0,164,266],addsitepropertytransform:246,adengz:0,adf:[0,5,6,165],adf_run:188,adfinput:188,adfinputerror:188,adfkei:188,adfoutput:188,adfoutputerror:188,adftask:188,adjac:[48,58,101,102,103],adjacent_onli:[102,103],adjust:[67,69,92,149,156,164,200,207,222],administr:180,adn:3,adopt:[1,2,222],ads_coord:12,ads_entries_dict:92,ads_entry1:92,ads_entry2:92,adsorb:[12,92,141,244],adsorb_both_surfac:12,adsorbatesitefind:[0,12,244],adsorpt:[0,5,6,11,92,141],adsorption_sit:12,adsorptionsitefind:244,adv:223,advanc:[2,3,124,152,156,164,244,266,268],advanced_transform:[3,5,6,243],advantag:[0,2],advis:[37,244,267],aea79f322180fa6f0bfa74cb2a156dcf:223,aecar0:[123,124],aecar2:[123,124],aeccar0:[123,124],aeccar2:[123,124],aeccar:[123,124],affect:[0,140],affin:[136,140],affine_matrix:136,affine_transform:136,affine_transformation_matrix:136,afloat:259,aflow:[0,13,106],aflow_prototyp:[5,6,11],aflowlib:122,aflowprototypematch:13,afm:[71,72,168],afm_:72,afm_struct:72,afresh:69,after:[2,3,9,14,21,36,41,42,47,53,55,63,64,67,85,89,136,137,141,149,154,164,170,177,184,186,187,193,202,222,244,253],afterward:3,ag_sv_gw:223,again:[3,156,164,256],against:[0,37,47,92,130,156,164],agent:[0,164],aggreg:42,agka1:46,agka2:46,agka:46,agkb1:46,agr:95,agte3:81,aid:[1,260],aiida:[0,5,6,165],aiidastructureadaptor:189,aim:[60,73,192,244],aimd:47,ainput:184,ajjackson:0,aka:[60,133],al2o3:164,al3:244,al3sc:39,al_gw:223,al_structur:168,alan:[0,266,267],alarm:180,alat:208,albalu:0,albeit:185,alchemi:[0,2,5,6,246,247,248,260],alexand:253,algebra:41,algo:[0,21,23,55,64,90,133,168,192,223,246,247],algo_:[246,247],algo_best_first:[55,246,247],algo_complet:[55,246,247],algo_enumer:[246,247],algo_fast:[55,246,247],algo_time_limit:55,algorith:168,algorithm:[0,1,8,12,15,19,21,23,40,41,42,45,46,48,50,58,61,63,64,67,69,72,77,78,84,85,88,89,100,123,133,140,141,153,168,170,173,184,192,210,221,222,223,229,230,236,244,246,247,251,266],algorithm_typ:19,alia:[64,69,76,140,144,167,169,172,173,175,176,177,184,221,234],alias:[0,2,145],align:[12,21,28,37,67,76,133,154,198,221,227,259],align_x:67,aligned_lattic:133,aligned_matrix:133,alio_tol:244,alireza:0,alkali:[131,137,223],alkalin:[131,137],all:[0,1,2,3,8,9,10,12,14,15,18,19,21,23,28,29,31,36,37,38,41,42,44,45,46,47,48,50,54,55,58,60,61,63,64,67,68,69,71,74,77,78,81,83,85,89,90,91,92,94,95,99,100,101,102,103,104,106,124,125,130,131,133,137,138,139,140,141,142,143,144,148,149,150,151,152,153,154,156,157,158,159,161,163,164,167,168,169,173,175,176,177,178,180,182,183,184,185,186,188,192,193,200,201,202,204,205,207,209,210,211,213,215,217,218,221,222,223,226,232,233,234,236,241,242,244,2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sevi:255,elsewher:[14,218],elsymbol:222,elt_ord:154,email:[48,164,175,256],emax:150,embed:199,emerg:135,emin:150,emit:[177,258],emmin:221,empi:173,empir:[3,75,131,137],emploi:[54,169,184,225],empti:[0,64,69,131,148,151,154,164,167,173,175,177,184,185,186,208,251,253,265],emul:[0,69],enabl:[2,10,12,150,164,173,184,223,244],enantiom:64,enclos:[41,69,218,222],encod:[0,24,169,173,177,178,253,268],encompass:[68,78,81,92],encount:[3,60,69,256,258],encourag:2,encut:[42,221,222,223],end:[19,77,88,94,102,107,128,132,140,141,143,167,185,198,202,218,221,222,265],end_index:[148,232],end_monom:207,end_struct:77,end_structur:140,end_t:128,end_tag:169,end_temp:223,end_tim:169,endpoint:[0,58,77,78,140,164,223],endpoints_minima:58,energet:92,energi:[0,2,3,6,12,14,36,37,39,41,42,50,53,54,55,56,58,68,71,72,78,81,82,83,91,92,94,95,97,101,103,126,128,131,135,137,141,143,144,148,149,150,151,153,154,156,157,158,164,167,168,170,178,184,186,188,192,199,200,201,202,208,209,210,213,218,221,222,223,233,234,244,246,247,255,263,266],energy1:83,energy2:83,energy_at_condit:81,energy_colormap:78,energy_correct:36,energy_cutoff:[37,192],energy_dens:50,energy_grid:149,energy_hkl:95,energy_level:154,energy_model:[5,6,11,244],energy_per_atom:[78,81,157,164],energy_rang:150,energy_span_around_fermi:149,energyarrai:144,energymodel:53,energytrend:58,enforc:[0,69,85,142,218,222,236,247],engin:[112,173,177,185,210],enhanc:[0,256],enmax:[221,223],enmin:221,enough:[61,63,140,222,236,244],ens:41,ensembl:[0,12,84,221,223],ensemble_cent:12,ensur:[0,1,2,3,36,51,54,64,81,90,102,137,138,139,141,142,149,152,156,164,200,218,221,222,223,246],enter:[78,131,268],enthalpi:[93,202,266],enthapli:93,entir:[1,2,10,41,60,101,107,133,149,150,164,173,177,185,246,268],entireti:2,entiti:157,entri:[0,2,5,6,13,14,34,36,37,38,41,50,64,69,76,78,81,83,92,101,102,103,108,127,137,142,164,167,169,170,173,176,177,184,204,223,244,255],entries_charg:102,entries_discharg:102,entries_in_chemsi:102,entropi:[93,233],entrpi:234,entry1:[78,103,158],entry2:[78,103,158],entry3:158,entry4:158,entry5:158,entry_dict_from_list:92,entry_id:[36,81,92,157],entry_list:81,entry_tool:[0,5,6,155],entryset:[0,158],enum34:0,enum_possible_plane_cub:63,enum_precision_paramet:[125,244],enum_sigma_cub:63,enum_sigma_hex:63,enum_sigma_ort:63,enum_sigma_rho:63,enum_sigma_tet:63,enumer:[0,3,12,53,72,92,124,125,134,168,244,247,254],enumerate_defectsit:42,enumeratestructuretransform:[0,3,244,246],enumerror:125,enumlib:[0,2,125,244,246],enumlib_cal:[0,3,5,6,121,244],enumlibadaptor:[0,125,244],env:[0,173,175,185],enviorn:135,environ:[0,2,18,19,21,23,64,69,73,137,164,175,190,227],environment:[0,3],eos:[5,6,11,82],eos_fit:54,eos_nam:54,eosbas:54,eoserror:54,eph:[0,186],ephtask:184,epilogslurmctld:180,epitaxi:67,epjconf:136,eps:[44,54,104,154,167,169,173,185,219,234,263],epsdegen:124,epsilon:[42,150,219,229,230,236],epsilon_:168,epsilon_ion:222,epsilon_stat:222,epsilon_static_wolf:222,eq_set:236,eq_strain:50,eq_stress:50,eqival:63,eqqon:1,equal:[0,28,36,69,72,74,81,85,91,92,131,133,136,137,140,141,142,143,144,148,149,151,153,158,177,188,209,222,233,236,251,254,260],equat:[37,41,50,54,72,82,92,168],equatori:69,equidist:247,equil_timestep:128,equilibr:[19,41,128],equilibrated_through_cent:19,equilibria:81,equilibrium:[50,78,92,153],equival:[12,15,23,36,40,46,50,51,63,71,74,80,82,83,85,121,124,133,140,141,142,145,148,151,152,156,157,158,164,190,193,204,218,232,236,242,244,247],equivalent_indic:19,equivalent_posit:242,equivalent_sit:23,equivalent_site_index_and_transform:18,equivalentsitesearcherror:27,er3:223,er_3:223,er_bp:222,er_bp_tot:222,er_ev:222,er_ev_tot:222,erase_info:265,erase_warn:265,ernzerhof:145,err:[182,183,221],err_fil:[182,183,221],err_msg:260,errmsg:[183,184],error:[0,1,2,3,27,28,47,50,63,78,79,101,122,126,131,141,142,144,149,153,154,161,164,167,169,172,173,175,176,177,180,182,183,184,188,193,202,210,215,222,227,244,247,254,255],error_def:202,error_definit:183,errorclass:183,errored_task:173,errorhandl:[172,182],ertl:61,erturn:178,escap:193,esp:[0,15,37,47,210,213,222,247],esp_task:210,especi:[0,3,42,47,64,149,213,222,268],espottesmith:0,espresso:219,essenti:[0,10,12,36,60,78,81,101,102,131,133,138,139,140,144,153,155,167,204,210,221,222,226,236,268],establish:[2,3,171],ester:0,estim:[15,21,34,47,50,66,69,71,72,73,84,128,180,223,246],estimate_band_connect:232,estimate_exchang:72,estimated_start_tim:180,eta:[53,55,149,222],eta_from_seebeck:149,etc:[0,1,2,3,4,36,47,50,61,63,64,69,71,72,74,78,85,100,101,108,123,136,137,138,139,140,142,143,144,152,153,158,160,163,164,173,175,184,185,198,199,200,209,212,213,221,222,223,235,236,244,255,268],ethyl:61,etot:[167,184],etsf:176,etsf_read:176,eu2:[0,223],eu3:[0,223],eu_2:223,euler:51,ev_to_k:42,ev_to_kj_per_mol:68,eval:[2,222],evalu:[30,38,39,42,50,55,69,81,82,173,185,188,209,210,222],evaluate_rpn:185,evaluate_wavefunc:222,evan:128,even:[0,3,48,59,77,85,101,107,131,140,164,168,184,221,222,238,246,247,251,268],event:[2,5,6,165,166,173,177,180,184,255,256,265],event_class:172,event_handl:177,eventhandl:177,eventreport:172,eventspars:172,eventsparsererror:172,eventu:[14,141],everi:[2,9,41,47,84,124,133,149,175,177,183,185,186,205,209,222],everyth:[1,148,268],evolut:[78,167,173,184],ewald:[0,1,5,6,11,37,42,53,244,246,247,268],ewaldelectrostaticmodel:53,ewaldminim:55,ewaldpap:55,ewaldsum:53,ewaldsumm:[0,53,55],ex_mat:72,ex_param:[72,128],exact:[8,74,75,85,140,141,158,221,223,238],exactdens:188,exactli:[0,63,85,141,149,168,221,247],exaf:[139,199,200],exampl:[0,1,3,8,9,10,15,21,34,36,41,47,48,55,58,64,69,74,78,83,84,85,87,92,93,94,100,101,102,103,106,109,130,131,133,136,137,139,140,141,144,145,149,150,153,154,156,157,158,160,164,168,169,171,173,177,178,185,186,200,202,205,210,213,217,218,220,221,222,223,225,236,240,244,246,247,251,255,256,262,263,265],exc:172,exc_dft_opt:201,exc_info:177,exc_typ:168,exce:[85,244],exceed:[180,183],excel:[0,123,236,266],except:[0,1,27,42,51,54,64,69,77,78,83,85,89,122,125,126,131,136,137,140,144,149,153,156,164,167,169,172,175,177,180,185,186,188,193,198,210,213,218,221,222,223,236,250],exception:89,exception_on_bad_xml:222,excess:37,exchamiltonian:168,exchang:[0,64,71,72,128,134,145,168,170,188,200,210],exchange_const:64,excit:[5,6,11,165,199,201,202,210],excitationspectrum:[56,210],excitinginput:196,exclud:[8,21,37,42,78,80,140,141,156,173,178,183,207,265],exclude_dir:[173,178],exclude_ext:173,exclude_nod:[183,184],exclude_ok_task:173,exclude_wildard:186,exclude_wildcard:186,excluded_atom:21,excluded_bonding_el:265,exclus:[145,173,177],exe:3,exec_arg:184,execut:[3,8,123,124,126,128,150,161,172,173,175,180,184,187,208,253,260],execwrapp:187,exelf:200,exercis:222,exhf:222,exist:[0,2,3,8,19,21,23,37,38,41,42,47,50,54,64,71,75,77,78,81,85,89,130,140,141,151,152,154,173,177,178,184,185,186,188,200,205,208,221,250,255,268],existing_structur:8,exit:[77,173,175,180,184,185,222],exitcod:180,exp:[42,46,47,50,164,211,222],exp_cos_aa:69,exp_entri:[5,6,155],expand:[0,1,3,63,174,186,244],expand_tim:[63,244],expans:[50,137,142],expect:[1,3,8,28,39,47,63,69,73,94,126,137,144,152,153,179,223,236,237,244],expected_charg:14,expens:[0,55,222,247],expentri:[159,164],experi:[3,205],experiment:[15,21,69,78,93,154,159,164,173,233,244,247],exphp:0,expir:180,explain:[0,149,154,156],explan:[0,63,131,154,156,164,180,268],explicit:[18,21,167,168,177,186,192,221,222],explicit_indic:21,explicit_optimized_permut:19,explicit_path:168,explicit_permut:19,explicitli:[1,48,69,180],explicitpermutationsalgorithm:19,explictli:28,explor:[2,42,124,268],expnorm:42,expon:[69,149],exponenti:[42,250],export_envar:175,export_msdt:47,expr:50,express:[2,28,50,133,142,183,184,185,186,218,222],expression1:185,expression2:185,expressionn:185,exsit:188,ext:[0,5,6,169,173,177,178,185,186,268],extend:[9,10,12,34,42,50,52,76,77,131,136,139,140,143,153,157,159,173,176,184,200,217,233,244,260,268],extend_collect:10,extend_structur:64,extend_transform:[9,10],extens:[0,2,3,47,64,95,106,137,138,140,154,159,169,173,177,178,184,185,186,201,207,222,268],extern:[0,3,160,177,180,221,256,258],extra:[2,38,41,71,76,100,168,170,185,212,222,227,250,264],extra_abivar:170,extra_nn_info:69,extract:[0,3,9,63,64,67,71,72,140,141,149,167,169,172,184,211,222,234,244,268],extract_clust:140,extract_metadata:183,extracted_vasp_potcar:3,extrapol:[47,153],extrapolate_reciproc:250,extrapolate_simple_reciproc:250,extras_requir:2,extrem:[0,2,40,55,63,90,140,154,164,222,223,234,238,246,247,263,268],extrema:[42,94,149],extrema_coord:42,extrema_df:42,extremum_icohpvalu:151,extrins:[100,101],eye:[133,168],f1d01e845dccc52d448679911f301a73:223,f4ff16a495dd361ff5824ee61b418bb0:223,f_1:[152,154],f_2:[152,154],f_3:[152,154],f_constant:202,f_gw:223,f_h:223,f_j:46,f_lower:28,f_upper:28,f_x:153,f_xyz:153,f_xz:153,f_y:153,f_yz:153,f_z:153,fac_aa:69,face:[12,19,69,84,91,227,265],face_dist:69,faces_color_overrid:32,facet:[19,21,28,44,46,69,78,84,91,92,95,133,251],facili:181,facilit:[154,173,177,234],facmaxdl:42,fact:[2,69,148,232,268],factor:[0,15,21,31,36,42,45,46,47,63,69,81,83,91,95,131,133,140,141,142,144,149,150,154,208,211,222,223,234,247,265],factori:[51,167,170,183],faghaninia:0,fail:[0,1,3,8,38,60,64,82,137,153,173,180,183,184,221],failur:[0,180,183],fairli:[1,2,3,64,236,265],faith:240,fake:[150,169],fall:[78,133,140,244,265],fallback:21,fallback_to_sourc:18,fals:[0,8,9,10,12,14,18,19,21,23,28,31,32,37,38,40,41,42,44,45,46,47,48,50,51,54,55,58,60,61,63,64,67,68,69,71,73,77,78,81,82,84,85,87,88,89,90,91,92,94,95,101,102,106,123,124,125,126,128,131,133,135,136,138,140,141,142,143,148,149,150,151,153,154,156,158,164,167,168,169,172,173,174,177,178,182,183,184,185,186,188,192,193,196,198,202,204,207,208,209,211,213,217,218,221,222,223,232,234,236,237,244,246,247,250,251,254,255,260,263,264,265],famili:[44,134,141,154,178],familiar:124,fan:128,far:[0,90,107,168,175,209,221,222],farid:168,farther:77,fashion:200,fast:[0,2,42,55,81,123,192,223,266,268],fast_norm:91,faster:[0,47,48,69,78,91,92,106,140,244,246],fastest:268,fatband:[0,154,20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substitution_structur:12,generate_surface_vector:91,genfmt:198,genom:[2,6,266],genrecip:42,geo_subkei:188,geoffroi:[0,2,21,267],geograph:66,geom:205,geom_opt_max_cycl:217,geometr:[69,74,77,100,266],geometri:[0,19,21,23,51,60,91,188,192,202,210,217,266],geometrically_equidist:18,geometry_info:18,geometry_opt:210,geometryoptim:188,geomstep:192,georg:[149,150],gerbrand:[2,77],germain:[0,154,267],get:[0,3,6,12,13,15,18,23,34,36,37,38,41,42,47,48,50,51,58,63,67,68,69,72,73,74,78,81,82,87,92,95,101,103,122,123,126,130,131,133,137,138,140,141,142,149,150,151,152,153,154,162,163,164,171,173,177,179,180,184,186,193,199,202,208,209,221,222,223,233,234,236,241,244,246,247,251,256,259,263,268],get_00t_magmom_with_xyz_saxi:152,get_13_bond:75,get_absorbing_atom_symbol_index:198,get_adjusted_fermi_level:222,get_all_anonymous_map:85,get_all_chempot:78,get_all_dist:133,get_all_entri:103,get_all_functional_group:61,get_all_neighbor:[0,140],get_all_neighbors_old:140,get_all_nn:69,get_all_nn_info:69,get_all_sit:69,get_all_statu:186,get_all_substr:164,get_all_voronoi_polyhedra:69,get_allowed_speci:89,get_alpha:222,get_analysi:73,get_analysis_and_structur:73,get_angl:[140,251],get_arrhenius_plot:47,get_asum_fcm:80,get_atom:190,get_atom_map:198,get_atomic_fract:[2,131],get_available_model:162,get_average_along_axi:222,get_average_eff_mass:149,get_average_voltag:101,get_ax3d_fig_plt:255,get_ax_fig_plt:255,get_axarray_fig_plt:255,get_axis_grid:222,get_band_gap:148,get_band_structur:[150,222],get_band_structure_from_vasp_multiple_branch:222,get_bandstructur:209,get_bandstructure_by_material_id:[164,268],get_basic_functional_group:61,get_bec_oper:80,get_best_electronegativity_anonymous_map:85,get_bibtex_str:193,get_bond_length:130,get_bond_ord:130,get_bonded_structur:[0,48,69,87],get_box_shift:204,get_boxed_structur:140,get_branch:[148,232],get_brillouin_zon:133,get_capacity_grav:101,get_capacity_vol:101,get_carrier_concentr:149,get_cart_coord:202,get_cartesian_coord:133,get_cbm:148,get_cbm_vbm:153,get_celldm:213,get_center_of_arc:31,get_centered_molecul:140,get_central_sit:19,get_charg:123,get_charge_transf:123,get_chempot_correct:68,get_chempot_range_map:[78,92],get_chempot_range_map_plot:78,get_chempot_range_stability_phas:78,get_chgint_plot:117,get_children:177,get_chunk:257,get_cluster_graph:185,get_cn:69,get_cn_dict:69,get_cod_id:161,get_coeff:83,get_cohesive_energi:164,get_cohp:151,get_cohp_by_label:151,get_cohp_dict:154,get_collect:[171,184],get_complete_do:149,get_complete_ph_do:211,get_complexity_factor:149,get_compliance_expans:50,get_composition_chempot:78,get_compound_pd:78,get_computed_entri:222,get_conduct:149,get_connect:84,get_connected_sit:64,get_consistent_set:152,get_consistent_set_and_saxi:152,get_contour_pd_plot:78,get_conv_struct:122,get_conventional_standard_structur:236,get_conventional_to_primitive_transformation_matrix:236,get_conversion_factor:[47,144],get_coordinating_elements_cn:42,get_coordination_environ:23,get_coordination_numb:19,get_coordination_of_sit:64,get_coordination_symmetry_measur:21,get_coordination_symmetry_measures_optim:21,get_correct:[36,37,156],get_corrections_dict:156,get_cost_per_kg:34,get_cost_per_mol:34,get_covalent_bond:140,get_critical_composit:78,get_critical_original_kink_ratio:68,get_critical_point_for_sit:124,get_crystal_field_spin:137,get_crystal_system:236,get_csm:23,get_csm_and_map:23,get_d:141,get_data:[107,164,268],get_datafram:169,get_decomp_and_e_above_hul:78,get_decomposit:78,get_decomposition_energi:81,get_default_basis_set:188,get_default_geo:188,get_default_scf:188,get_default_unit:188,get_default_xc:188,get_defectsite_multipl:42,get_deformation_matrix:51,get_delta_etim:175,get_dens:153,get_deriv:250,get_dict_for_mongodb_queri:173,get_diff_coeff:50,get_dihedr:140,get_dimension:0,get_dimensionality_cheon:48,get_dimensionality_gorai:48,get_dimensionality_larsen:48,get_direct_band_gap:148,get_direct_band_gap_dict:148,get_displaced_structur:211,get_dist:140,get_distance_and_imag:133,get_do:150,get_doc:[164,209],get_dop:153,get_dopability_limit:41,get_dopants_from_shannon_radii:87,get_dopants_from_substitution_prob:87,get_dos_by_material_id:[164,268],get_dos_dict:[154,234],get_dos_plot:117,get_drift_corrected_structur:47,get_e_above_hul:[0,78],get_effective_csm:18,get_effective_ec:50,get_el_amount:83,get_el_amt_dict:131,get_el_sp:137,get_element_do:[153,233,234],get_element_fract:81,get_element_profil:78,get_element_spd_do:153,get_elements_between_band:222,get_elt_projected_plot:154,get_elt_projected_plots_color:154,get_energi:[53,112,115,126,131],get_energy_buckingham:126,get_energy_dens:101,get_energy_relax_structure_buckingham:126,get_energy_tersoff:126,get_entri:[0,34,164],get_entries_in_chemsi:[0,164,268],get_entry_by_material_id:164,get_environ:[5,6,108],get_environments_figur:23,get_equilibrium_reaction_energi:78,get_equiv_transform:91,get_equivalent_atom:236,get_equivalent_kpoint:148,get_equivalent_qpoint:232,get_event_handler_class:172,get_exchang:72,get_exchange_group_info:71,get_excitation_spectrum:210,get_exp_entri:164,get_exp_thermo_data:164,get_explanation_dict:156,get_extended_surface_mesh:12,get_extrapolated_conduct:47,get_extrapolated_diffus:47,get_extrem:149,get_extrema:94,get_facet:78,get_factor:91,get_fcm_oper:80,get_fermi:153,get_fermi_interextrapol:[0,153],get_ferromagnetic_structur:71,get_filepaths_and_ext:177,get_film_indic:67,get_final_structur:184,get_form_energi:78,get_form_energy_per_atom:78,get_frac_coords_from_ll:133,get_fract:131,get_fractional_coord:133,get_framework_rms_plot:[0,47],get_free_sphere_param:227,get_from_hint:21,get_gap:153,get_gb_data:164,get_geometri:19,get_geometry_from_iucr_symbol:19,get_geometry_from_iupac_symbol:19,get_geometry_from_mp_symbol:19,get_geometry_from_nam:19,get_ggt:50,get_graphviz:173,get_graphviz_dirtre:177,get_grouped_indic:142,get_gruneisen_paramet:50,get_hal:236,get_hall_carrier_concentr:149,get_hash:85,get_heat_capac:50,get_heteroatom:61,get_high_accuracy_voronoi_nod:227,get_hull_energi:[78,81],get_icohp:151,get_icohp_by_label:151,get_icohp_dict_by_bondlength:151,get_icohp_dict_of_sit:151,get_ieee_rot:142,get_implemented_geometri:19,get_info:180,get_integer_formula_and_factor:131,get_integer_index:133,get_integrated_diff:222,get_interaction_graph:72,get_interface_react:164,get_interpolated_gap:153,get_interpolated_valu:[139,151,153,233],get_ir_mesh:0,get_ir_reciprocal_mesh:236,get_ist_oper:80,get_kink:68,get_kpoint:[163,223,237],get_kpoint_degeneraci:148,get_kpoint_weight:236,get_label:92,get_lattic:193,get_lattice_quanta:58,get_lattice_typ:236,get_lattvec:150,get_lin:198,get_line_in_facet:95,get_linear_interpolated_valu:251,get_linearly_independent_vector:31,get_lll_frac_coord:133,get_lll_reduced_lattic:133,get_local_extrema:42,get_local_order_paramet:69,get_locpot_along_slab_plot:92,get_low_energy_ord:72,get_lower_and_upper_f:28,get_lowest_decomposit:34,get_magnet:115,get_magnitude_of_effect_from_speci:73,get_magnitude_of_effect_from_spin_config:73,get_magsymop:193,get_map:85,get_mass:144,get_materials_id:164,get_materials_id_from_task_id:164,get_materials_id_refer:[0,164],get_max_bond_dist:69,get_max_bond_length:84,get_max_capgrav:100,get_max_capvol:100,get_max_inst:103,get_max_muo2:103,get_mdf_robot:186,get_messag:177,get_mft_temperatur:72,get_mi_vec:12,get_miller_index_from_coord:133,get_miller_index_from_site_index:140,get_min_inst:103,get_min_muo2:103,get_minkowski_r:122,get_molecule_hash:74,get_moment:152,get_moment_relative_to_crystal_ax:152,get_mongo_info:173,get_monolay:92,get_motif_typ:42,get_mp_structur:260,get_msd_plot:47,get_mu_bound:149,get_multipl:36,get_nac_eigendisplacements_along_dir:232,get_nac_frequencies_along_dir:232,get_nam:19,get_nearest_sit:58,get_neighb_voronoi_indic:23,get_neighbor:140,get_neighbors_in_shel:140,get_neighbors_of_site_with_index:69,get_neighbors_old:140,get_newnode_id:177,get_next_index:55,get_niggli_reduced_lattic:133,get_njobs_in_queu:[173,184],get_nmr_quadrupole_mo:137,get_nn:69,get_nn_data:69,get_nn_imag:69,get_nn_info:69,get_nn_shell_info:69,get_no_mixing_energi:68,get_nod:180,get_nonmagnetic_structur:71,get_noppmodel:168,get_not_implemented_geometri:19,get_num_division_kpoint:122,get_occup:222,get_okeeffe_distance_predict:69,get_okeeffe_param:69,get_op_valu:42,get_orbital_derivative_between_st:222,get_orbital_resolved_cohp:151,get_order_paramet:69,get_ordered_with_polici:184,get_oriented_slab:67,get_ortho_ax:67,get_orthogonal_c_slab:141,get_oxi_state_decorated_structur:15,get_oxidation_state_decorated_structur:123,get_par:177,get_paramet:69,get_parchg:222,get_pars:183,get_partial_dos:150,get_pattern:[44,45,46],get_pelecs_and_pion:58,get_percentage_bond_dist_chang:84,get_percentage_lattice_parameter_chang:84,get_percentage_volume_chang:84,get_perturbed_indic:51,get_ph_bs_symm_lin:211,get_ph_bs_symm_line_from_dict:211,get_ph_do:211,get_phonon_bandstructure_by_material_id:164,get_phonon_ddb_by_material_id:164,get_phonon_dos_by_material_id:164,get_phonon_frequ:222,get_phonopy_structur:211,get_piezo:80,get_plot:[44,78,94,95,104,154,234,263],get_plot_data:104,get_pmesh:19,get_pmg_structur:211,get_point_group_oper:236,get_point_group_symbol:236,get_pointgroup:236,get_points_in_spher:133,get_polarization_chang:58,get_polarization_change_norm:58,get_potcar:222,get_potcar_hash:221,get_potential_shift:37,get_pourbaix_domain:81,get_pourbaix_entri:164,get_pourbaix_plot:81,get_power_factor:149,get_predicted_structur:90,get_prim_struct:122,get_primitive_standard:0,get_primitive_standard_structur:[236,237],get_primitive_structur:140,get_product:68,get_projected_plots_dot:154,get_projected_plots_dots_patom_pmorb:154,get_projection_on_el:[148,222],get_projections_on_elements_and_orbit:148,get_prototyp:13,get_pseudos_for_structur:178,get_q2:69,get_q4:69,get_q6:69,get_rand_bec:80,get_rand_fcm:80,get_rand_ist:80,get_ratio:63,get_rdf_figur:24,get_react:164,get_real_summ:37,get_reasonable_repetit:232,get_recip_summ:37,get_reconstructed_band_structur:148,get_recp_symmetry_oper:133,get_reduced_composition_and_factor:131,get_reduced_formula_and_factor:131,get_reduced_structur:140,get_refined_structur:236,get_relaxed_structur:126,get_removals_int_oxid:100,get_result:[173,177,184],get_rms_anonym:85,get_rms_dist:85,get_rmsd:74,get_rot:12,get_rotation_angle_from_sigma:[63,244],get_s2_like_s1:85,get_sadf_figur:24,get_same_branch_polarization_data:58,get_scal:142,get_scan_plot:202,get_scissors_build:184,get_script_str:175,get_sect:169,get_seebeck:149,get_seebeck_eff_mass:149,get_self_interact:37,get_set:0,get_shannon_radiu:137,get_shared_symmetry_oper:241,get_shear_reduced_slab:67,get_site_ce_fractions_and_neighbor:18,get_site_coordination_environ:18,get_site_coordination_environments_fract:18,get_site_do:[153,233],get_site_energi:55,get_site_info_for_specie_allc:23,get_site_info_for_specie_c:23,get_site_neighbor:18,get_site_orbital_do:153,get_site_spd_do:153,get_site_symmetri:241,get_site_t2g_eg_resolved_do:153,get_sitej:84,get_sites_in_spher:140,get_slab:141,get_slab_region:141,get_smeared_dens:[153,233],get_sorted_structur:[0,63,67,140,141],get_space_group_info:140,get_space_group_numb:236,get_space_group_oper:236,get_space_group_symbol:236,get_spacegroup_symbol:2,get_spd:[154,263],get_spd_do:[153,154],get_special_carbon:61,get_specific_energi:101,get_spectre_plot:202,get_stability_criteria:50,get_stabl:[0,164],get_stable_entri:[81,103],get_stable_entry_at_u:92,get_stable_fcm:80,get_stat:[180,185],get_statist:23,get_str:[143,198,204,208,221,222],get_strain_from_stress:50,get_strain_state_dict:50,get_structur:[0,21,143,164,190,193,260,268],get_structure_by_formula:161,get_structure_by_id:161,get_structure_by_material_id:[164,268],get_structure_compon:48,get_structure_from_dict:211,get_structure_from_mp:[0,2,6],get_structure_from_prev_run:223,get_structure_property_dict:50,get_structure_with_charg:209,get_structure_with_nod:42,get_structure_with_only_magnetic_atom:71,get_structure_with_spin:71,get_sub_electrod:[102,103],get_subgraphs_as_molecul:64,get_subset_in_chemsi:158,get_substr:164,get_suggested_saxi:152,get_summary_dict:[47,67,82,102],get_summed_cohp_by_label_and_orbital_list:151,get_summed_cohp_by_label_list:151,get_summed_icohp_by_label_list:151,get_supercell_matrix:85,get_surface_data:164,get_surface_equilibrium:92,get_surface_sit:141,get_sym_eq_kpoint:148,get_symbol_cn_map:19,get_symbol_dict:142,get_symbol_list:50,get_symbol_name_map:19,get_symm_band:149,get_symm_data:238,get_symmetric_sit:141,get_symmetric_wallace_tensor:50,get_symmetrically_distinct_miller_indic:141,get_symmetrically_equivalent_miller_indic:141,get_symmetrized_fcm:80,get_symmetrized_structur:[236,242],get_symmetry_dataset:236,get_symmetry_oper:[0,236],get_symop:193,get_task_data:164,get_task_scfcycl:173,get_tasker2_slab:141,get_tgt:50,get_thermal_conduct:149,get_tick:[154,234],get_total_ionic_dipol:58,get_trans_mat:63,get_transform:85,get_transition_chempot:78,get_tri_area:95,get_typ:69,get_unique_famili:44,get_unit_primitive_area:92,get_unreconstructed_slab:141,get_unstable_entri:103,get_unstable_fcm:80,get_uvec:142,get_v:77,get_val:15,get_valid_path:106,get_valu:169,get_vars_datafram:177,get_vasp_input:[0,9,223],get_vasp_kpoint_file_sym:122,get_vasprun_outcar:223,get_vbm:148,get_vector_along_lattice_direct:[0,133],get_void_volume_surfarea:227,get_voigt_dict:142,get_volum:150,get_voronoi_nod:227,get_voronoi_polyhedra:69,get_wallace_tensor:50,get_weight:250,get_weights_of_nn_sit:69,get_wigner_seitz_cel:133,get_wt_fract:131,get_wulff_shap:164,get_xas_data:164,get_xrd_plot:[0,117],get_xyz_magmom_with_001_saxi:152,get_yield_stress:50,get_z_ordered_elmap:15,get_zmatrix:202,get_zt:149,getmessag:177,getmu_vertices_stability_phas:78,getsiz:185,gfactor:219,gflop:169,gfortran:[3,116],gfortranbinari:3,gga:[0,2,15,21,37,41,77,134,145,156,164,221,222,223,247,266],gga_c_am05:[134,145],gga_c_apb:134,gga_c_bgcp:134,gga_c_ft97:134,gga_c_gam:134,gga_c_hcth_a:134,gga_c_lm:134,gga_c_lyp:[134,145],gga_c_n12:134,gga_c_n12_sx:134,gga_c_op_b88:134,gga_c_op_g96:134,gga_c_op_pb:134,gga_c_op_pw91:134,gga_c_op_xalpha:134,gga_c_optc:134,gga_c_p86:134,gga_c_pb:[134,145],gga_c_pbe_jrgx:134,gga_c_pbe_sol:[134,145],gga_c_pbef:134,gga_c_pbeint:134,gga_c_pbeloc:134,gga_c_pw91:[134,145],gga_c_q2d:134,gga_c_regtpss:134,gga_c_revtca:134,gga_c_rge2:134,gga_c_sogga11:134,gga_c_sogga11_x:134,gga_c_spb:134,gga_c_tca:134,gga_c_wi0:134,gga_c_wi:134,gga_c_wl:134,gga_c_xpb:134,gga_c_zpbeint:134,gga_c_zpbesol:134,gga_k_absp1:134,gga_k_absp2:134,gga_k_apb:134,gga_k_apbeint:134,gga_k_baltin:134,gga_k_dk:134,gga_k_ernzerhof:134,gga_k_fr_b88:134,gga_k_fr_pw86:134,gga_k_ge2:134,gga_k_golden:134,gga_k_gp85:134,gga_k_gr:134,gga_k_lc94:134,gga_k_lieb:134,gga_k_llp:134,gga_k_ludena:134,gga_k_mey:134,gga_k_ol1:134,gga_k_ol2:134,gga_k_pearson:134,gga_k_perdew:134,gga_k_revapb:134,gga_k_revapbeint:134,gga_k_tfvw:134,gga_k_thakkar:134,gga_k_tw1:134,gga_k_tw2:134,gga_k_tw3:134,gga_k_tw4:134,gga_k_vjk:134,gga_k_vsk:134,gga_k_vw:134,gga_k_yt65:134,gga_relax:21,gga_x_2d_b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pcal:126,gulpconvergenceerror:126,gulperror:126,gulpio:126,gunter:[2,266,267],gvallver:154,gvallverdu:0,gw_fiesta:201,gw_option:201,gw_qprang:168,gwcalctyp:168,gweight:18,gwpara:168,gzip:[0,107,123,124,193],h2o2:131,h2o:[81,156],h_gw:223,h_node:256,habit:184,had:[0,36,55,149],haeberlen:76,haeberlen_valu:76,haeberlennot:76,hafner:39,half:[0,85,141,202],halfspac:41,halfspaceinterect:41,halfspaceintersect:81,halit:141,halite_111_octopolar_2x2:141,hall:[149,150,154,161,236],hall_carrier_conc_trac:150,hall_carrier_conc_trace_mu:150,hall_dop:149,hallten:149,halogen:[131,137],halogen_list:75,hamilton:[0,154],hamiltonian:[71,72,168],hammer:145,hand:[3,106],handi:167,handl:[0,1,2,48,92,131,150,151,152,172,175,191,205,209,215,236],handle_input_ev:172,handle_task_ev:172,handler:[172,177,180,182],hangup:180,hanmei:0,hanmeitang:0,hansen:145,hanson:13,happen:[36,42,69],haranczyk:[40,42,266],hard:[73,137,173,204,246,247],hardwar:[180,183],harmon:82,harri:76,hart:[0,3,13,246],hartre:[167,168,178,186,210,222],hartree_paramet:174,has:[0,1,2,3,9,21,23,24,38,41,47,50,54,55,60,63,67,69,71,78,80,81,83,92,101,106,124,133,136,137,140,141,142,145,149,150,152,154,164,172,173,175,177,178,180,184,186,188,198,202,205,210,212,221,222,223,230,232,236,244,258,268],has_abiext:185,has_antibnd_states_below_efermi:151,has_chroot:173,has_db:[173,184],has_dojo_report:178,has_eigendisplac:232,has_error:193,has_good_quality_check_occupied_band:209,has_good_quality_maxdevi:209,has_hint:178,has_imaginary_freq:232,has_intersect:18,has_materials_project_access:26,has_mpi:184,has_mpiio:184,has_nac:[211,232],has_netcdf:184,has_node_failur:180,has_omp:184,has_opt:188,has_queu:184,has_schedul:173,has_subkei:188,hash:[0,74,85,137,142,156,178,221,222,223],hashabl:[74,85,131,138,140,145,177],hasn:221,hautier:[0,2,21,78,88,89,149,223,266,267],have:[0,1,2,3,8,12,14,15,21,23,36,38,41,47,48,51,53,55,58,59,60,61,63,64,67,69,71,73,75,77,78,84,85,87,91,92,94,95,100,101,102,103,106,107,121,122,126,131,135,137,138,140,141,142,143,144,148,149,152,153,154,156,157,164,167,169,173,176,177,178,180,183,184,185,186,188,192,204,209,211,219,221,222,223,227,234,236,244,245,246,247,248,251,253,259,260,266,268],have_consistent_saxi:152,have_equivalent_surfac:141,haven:[0,55,173],haydock:168,hbar:[42,50],hcp:[69,95,247],hdf5:[0,222],he_bcc:260,he_gw:223,head:207,headach:223,header:[0,3,163,176,193,198,199,200,208,212,218,222,225,259],header_pattern:[218,222],header_str:198,header_string_from_fil:198,heat:[50,233,234,255],heatmap:255,heavi:[0,164,268],heavier:157,heavili:268,hedin:221,height:[12,54,69,104,154,244,255],heisenberg:[0,5,6,11,64,70],heisenbergmapp:[72,128],heisenbergscreen:72,hello:171,helmholtz:[82,233],helmholtz_free_energi:233,helmoltz:234,help:[0,2,12,19,38,63,64,71,78,92,133,141,153,154,164,209,265],helper:[0,5,6,10,12,28,42,50,64,69,84,92,95,107,122,127,131,141,142,164,165,166,171,184,185,196,198,213,221,255],hematit:93,henc:[179,184,221,247,253],henchforth:0,heng:0,henkelman:[94,123,222,266],henkelmann:[0,3,123,266],henriquemiranda:232,here:[1,2,3,48,69,71,85,92,141,145,173,178,184,185,211,219,222,253,258,268],herebi:2,herfindahl:66,hermann:238,hessian:[0,124,154,202,210],heteroatom:61,heterostructur:[48,59,91],heurist:[71,73],hex:[0,63,177,237],hex_angle_tol:133,hex_bipyr:69,hex_length_tol:133,hex_pyr:69,hex_triplet:177,hexagon:[0,63,69,95,133,141,168,221,223,236,238,240,244],hf_pv:223,hf_sv_gw:223,hfscreen:223,hg_sv_gw:223,hhi:[0,5,6,11],hick:13,hide:64,hide_image_edg:64,hide_unconnected_nod:64,hierarchi:268,high:[0,2,10,42,71,73,92,137,149,150,162,170,178,192,210,223,227,236,237,265,266],highcharg:39,highchart:39,higher:[41,42,50,53,69,89,92,149,154,222,223,247],highest:[12,42,48,50,78,84,101,135,149,184,246,268],highest_protocol:260,highli:[0,1,2,3,168,221,222,246,268],highlight:268,highsymmkpath:[150,154,221,237],hight:221,hilber:168,hilbert:168,hilberttransform:168,hill:[50,131],hill_formula:131,hillari:0,hint:[0,19,21,23,71,178,184],hint_for_accuraci:178,hints_info:19,hints_typ:19,hirerachi:268,hirschman:66,hirshfeld:223,hist:[167,184,186],histfil:186,histo:149,histogram:[149,169,185],histori:[9,10,164,167,173,177,186,246,247,248,256],historynod:256,historyrecord:177,hit:250,hive:[5,6,98,105,107,268],hkil:[95,141],hkill:95,hkl:[44,46,48,95,133,141],hkl_list:95,hkl_transform:141,hkl_tuple_to_str:95,ho3:223,ho_3:223,hold:[63,141,227],holder:2,hole:[37,38,41,149,153],hollow:12,home:[2,185],homebrew:124,homo:135,homogen:50,homogeneous_poisson:50,hook:[0,1],hop:69,hopkin:0,hopp:69,horizont:41,horton:[0,40,42],host:[38,42,158,173],hour:[173,175,181],hous:0,how:[12,21,23,38,53,55,61,64,66,85,131,133,140,141,149,150,151,154,164,222,223,244,250,256,268],howev:[0,2,9,10,60,64,69,92,102,106,140,141,154,200,221,222,223,247,268],href:162,hse:[0,223],html:[0,2,3,55,95,137,145,163,173,176,177,180,185,197,201,224,258,259],htmlifi:259,http:[0,1,2,3,13,55,81,82,92,95,122,123,124,126,128,136,137,145,149,150,152,154,162,163,164,173,176,177,179,180,185,197,201,212,219,222,223,224,227,232,236,244,251,258,266,268],htz1992213:0,huang:[77,266],hubbard:[156,164,222,223,268],hubbard_u:223,huck:222,huge:47,hui:0,hull:[0,34,68,78,81,95,102,103,164],human:[172,177,268],hund:137,hvec:50,hyb:145,hyb_gga_x_n12_sx:134,hyb_gga_x_sogga11_x:134,hyb_gga_xc_b1lyp:134,hyb_gga_xc_b1pw91:134,hyb_gga_xc_b1wc:134,hyb_gga_xc_b3lyp5:134,hyb_gga_xc_b3lyp:134,hyb_gga_xc_b3p86:134,hyb_gga_xc_b3pw91:134,hyb_gga_xc_b97:134,hyb_gga_xc_b97_1:134,hyb_gga_xc_b97_1p:134,hyb_gga_xc_b97_2:134,hyb_gga_xc_b97_3:134,hyb_gga_xc_b97_k:134,hyb_gga_xc_bhandh:134,hyb_gga_xc_bhandhlyp:134,hyb_gga_xc_cam_b3lyp:134,hyb_gga_xc_camy_b3lyp:134,hyb_gga_xc_camy_blyp:134,hyb_gga_xc_cap0:134,hyb_gga_xc_edf2:134,hyb_gga_xc_hjs_b88:134,hyb_gga_xc_hjs_b97x:134,hyb_gga_xc_hjs_pb:134,hyb_gga_xc_hjs_pbe_sol:134,hyb_gga_xc_hpbeint:134,hyb_gga_xc_hse03:134,hyb_gga_xc_hse06:134,hyb_gga_xc_lc_vv10:134,hyb_gga_xc_lcy_blyp:134,hyb_gga_xc_lcy_pb:134,hyb_gga_xc_lrc_wpb:134,hyb_gga_xc_lrc_wpbeh:134,hyb_gga_xc_mb3lyp_rc04:134,hyb_gga_xc_mpw1k:134,hyb_gga_xc_mpw1pw:134,hyb_gga_xc_mpw3lyp:134,hyb_gga_xc_mpw3pw:134,hyb_gga_xc_mpwlyp1m:134,hyb_gga_xc_o3lyp:134,hyb_gga_xc_pbe0_13:134,hyb_gga_xc_pbeh:134,hyb_gga_xc_revb3lyp:134,hyb_gga_xc_sb98_1a:134,hyb_gga_xc_sb98_1b:134,hyb_gga_xc_sb98_1c:134,hyb_gga_xc_sb98_2a:134,hyb_gga_xc_sb98_2b:134,hyb_gga_xc_sb98_2c:134,hyb_gga_xc_tuned_cam_b3lyp:134,hyb_gga_xc_wb97:134,hyb_gga_xc_wb97x:134,hyb_gga_xc_wb97x_d:134,hyb_gga_xc_wb97x_v:134,hyb_gga_xc_x3lyp:134,hyb_mgga_x_dldf:134,hyb_mgga_x_mn12_sx:134,hyb_mgga_x_mn15:134,hyb_mgga_x_ms2h:134,hyb_mgga_x_mvsh:134,hyb_mgga_x_scan0:134,hyb_mgga_xc_b86b95:134,hyb_mgga_xc_b88b95:134,hyb_mgga_xc_bb1k:134,hyb_mgga_xc_m05:134,hyb_mgga_xc_m05_2x:134,hyb_mgga_xc_m06:134,hyb_mgga_xc_m06_2x:134,hyb_mgga_xc_m06_hf:134,hyb_mgga_xc_m08_hx:134,hyb_mgga_xc_m08_so:134,hyb_mgga_xc_m11:134,hyb_mgga_xc_mpw1b95:134,hyb_mgga_xc_mpwb1k:134,hyb_mgga_xc_pw6b95:134,hyb_mgga_xc_pw86b95:134,hyb_mgga_xc_pwb6k:134,hyb_mgga_xc_revtpssh:134,hyb_mgga_xc_tpssh:134,hyb_mgga_xc_wb97m_v:134,hyb_mgga_xc_x1b95:134,hyb_mgga_xc_xb1k:134,hybersten:168,hybrid:[37,41,134,135,204,222],hybrid_cbm:[37,38],hybrid_vbm:[37,38],hydrogen:[0,61,81,124,131,137,192],hydroxid:84,hyperfin:222,hyperplan:[41,81],i_gw:223,iatom:202,ibrion:[222,223],ibz:[168,221],ibzkpt:222,ic102031h:[88,89],icam:149,icharg:223,iclud:0,icohp:[151,154,209],icohpcollect:[0,151,209],icohplist:[151,209],icohpvalu:151,icoop:[151,209],icooplist:[151,209],icor:221,icsd:[0,15,26,89,90,131,137,256],icsd_id:164,icsd_oxidation_st:[131,137],icsd_vol:90,id_gener:250,idea:[200,268],ideal:[19,42,69,95,127,137,151,184,209,244],ident:[28,50,51,52,67,69,85,103,149,218,222,240,247],identif:[19,21,48,69,124,149,177,199],identifi:[0,18,19,21,36,48,50,60,61,63,72,74,91,92,95,128,134,149,157,173,177,180,198,200,232,236,266],idir:185,ido:222,ids:[161,164,173],idx1:192,idx2:192,idx:51,ieee:[0,91,142],iek:0,ifftn:222,iflat_nod:173,iflat_task:173,iflat_tasks_wti:173,ign:180,ignor:[0,1,48,50,64,69,71,85,137,169,173,180,206,208,222,259],ignore_error:[50,173],ignore_ionic_bond:75,ignore_on:259,ignored_speci:85,igor:221,igpar:222,igraph:[0,72],igw:69,igw_ep:69,igw_spp:69,igw_ta:69,iii:[38,69,133,138,140,141],iiipi:137,ijkl:50,ill:153,illeg:180,illustr:2,imag:[0,23,42,47,48,58,64,69,77,78,84,94,104,133,138,140,154,173,202,204,212,223,234,244,263,265],imag_partxi:222,imag_partxx:222,imag_partxz:222,imag_partyi:222,imag_partyz:222,imag_partzz:222,image_format:[78,104,265],image_index:84,image_label:64,imagej:84,imagenam:23,imaginari:[168,222,232],img_format:[154,202,234,263],immedi:[218,222],immut:[0,131,137,140,268],imolecul:[0,140,268],impact:[2,41],implaus:71,implement:[0,2,9,10,15,19,21,35,40,43,46,48,54,62,63,72,77,82,85,92,101,106,107,123,124,128,130,131,135,136,139,141,142,144,145,152,154,156,157,158,160,162,164,168,172,173,177,178,179,183,184,185,186,200,201,202,209,214,217,220,221,222,223,227,229,230,235,244,247,249,262,265,266,268],implementd:204,implemented_geometri:19,impli:[0,2,10,84,85,133,138,140,158,173,185],implic:92,implicit:0,implicitli:185,impos:[2,64,244],imposs:[85,198],improp:[48,58,142,204,223],improv:[0,2,107,131,135,158,175,222,223,267],in_array_list:238,in_coord_list:251,in_coord_list_pbc:[12,251],in_d:223,in_d_gw:223,in_plac:138,in_simplex:251,in_spectator_mod:177,in_unit_plan:[141,244],inaccur:[94,246],inb_set:21,inc_molecule_graph:48,inc_orient:48,inc_site_id:48,inc_structur:[106,164,222],inc_vertic:48,incar:[0,106,152,163,209,220,221,222,223],incar_input:209,incar_output:209,incar_paramet:0,inch:[54,154,255],inchi:74,inchimolatommapp:74,incid:200,includ:[0,1,2,3,9,10,12,21,23,34,36,37,38,42,46,47,48,50,51,55,58,60,63,64,67,68,69,78,81,89,91,92,99,103,106,131,133,136,138,139,140,141,142,143,144,149,151,153,157,158,159,163,164,168,170,173,175,177,185,188,200,204,209,222,223,244,267,268],include_base_prop:50,include_bv_charg:40,include_central_site_in_centroid:21,include_cif:[10,223],include_deactiv:19,include_dist:85,include_gamma:163,include_ignored_speci:85,include_imag:140,include_improp:142,include_index:140,include_mscd_t:47,include_msd_t:47,include_myself:103,include_no_mixing_energi:68,include_reconstruct:141,include_strain:91,include_unprocessed_entri:81,include_user_ag:164,include_work_of_separ:164,inclus:131,inclusionari:244,inclvkb:[168,170],incompat:[0,3,41,156,193],incomplet:[21,206],inconsist:[47,142,152,173],incorpor:[64,164,222],incorport:135,incorrect:0,incorrectli:0,incr:92,increas:[0,2,23,28,42,55,63,84,90,131,140,164,172,183,184,221,223,244,254,265],increase_cpu:183,increase_mem:[183,184],increase_ncpu:184,increase_resourc:184,increase_tim:[183,184],incred:141,increment:[92,149,222],incres:183,ind1:140,ind2:140,ind:[133,222],ind_zero_freq:233,indata:186,inde:[173,180,185],indent:196,indentifi:182,independ:[0,50,51,78,91,92,148,150,168,173,188,202,210],index1:84,index2:84,index:[0,1,2,12,21,23,28,37,38,39,42,48,50,51,55,59,60,63,64,66,68,69,74,75,80,84,91,92,95,123,124,128,133,137,138,140,141,142,143,148,149,152,154,164,168,176,185,186,188,192,198,199,200,201,202,204,207,213,222,223,232,233,241,244,251,252,254,265,268],index_non:63,index_of_sit:141,indexerror:[9,10],indic:[0,9,10,12,19,21,24,28,37,42,44,48,50,51,55,61,63,64,67,69,74,77,84,85,91,92,95,124,130,131,133,136,138,140,141,142,148,149,151,152,153,154,168,173,198,202,204,209,221,222,223,232,236,244,246,248,251,252,254,256,263],indices_from_symbol:140,indices_left:55,indices_neigh:69,indices_separ:28,indices_species_map:246,indices_to_mov:246,indices_to_remov:246,indici:91,individidu:178,individu:[2,47,81,92,94,151,154,222],induc:64,inequival:[71,211],inertia:236,inext:185,inf:[23,150,168,186,244],infer:204,infin:[0,18,92],infinit:[24,69,74,133,149,175,268],infit:[40,42],influenc:[55,149],info:[0,2,21,23,69,82,124,164,169,172,173,177,180,184,199,201,204,209,222,223,227,265],info_dict:[23,134],inform:[0,2,3,14,18,21,23,28,36,38,42,44,47,48,63,64,67,68,69,71,83,84,85,124,126,128,132,135,140,141,142,143,144,145,148,149,151,152,155,157,164,167,173,177,184,192,193,198,209,222,223,225,226,227,232,244,246,247,248,266,268],inforn:177,infos_on_basis_set:201,infos_on_system:201,infrastructur:[223,266],inher:[141,244],inherit:[50,177,223,246,247],init:[0,42,63,69,91,131,134,141,173,222,223],init_3point:28,init_cel:63,init_count:177,init_inplane_shift:67,init_neighbors_set:23,init_slab:141,initi:[0,2,3,9,10,14,15,19,21,23,24,28,36,37,38,40,42,45,46,47,50,53,54,55,60,63,67,69,71,75,78,81,84,90,91,92,94,100,102,123,126,130,131,136,137,140,141,142,144,151,152,153,154,157,164,167,173,175,177,179,180,184,185,186,188,192,201,209,213,221,223,224,234,236,240,247,251,263,268],initial_angle_tol:13,initial_comp:102,initial_defect_structur:[37,38],initial_disp:47,initial_entri:14,initial_fit:142,initial_ltol:13,initial_molecul:14,initial_norm:23,initial_r:23,initial_stol:13,initial_structur:[47,63,84,141],initial_structure_environ:21,initialis:69,initialization_opt:18,initializationchemenverror:27,initio:[149,154,175],inner:[133,140],innov:266,inorgan:[88,89,131,137,223,255],inp:[140,184,186,198,199,200,207,268],inpfil:188,input:[0,2,3,5,6,9,10,12,13,19,36,42,44,45,46,47,48,50,54,55,58,61,63,64,67,69,71,72,73,76,78,81,84,85,88,89,90,95,103,106,109,126,127,128,131,133,135,137,140,141,142,143,148,149,150,151,154,156,157,158,159,164,165,168,172,173,174,175,177,178,180,184,185,186,188,191,192,193,195,197,199,200,201,202,203,204,206,207,208,209,210,212,213,214,217,218,219,220,222,223,225,226,227,236,237,242,244,246,247,248,251,254,259,260,268],input_arrai:[50,142],input_dir:[200,221],input_fil:[173,184,207,217],input_filenam:[2,207],input_grid:209,input_matrix:[50,79,80],input_mil:95,input_paramet:202,input_set:156,input_str:[140,224],input_vasp_arrai:79,inputset:156,inscrib:244,insensit:177,insert:[0,42,63,64,100,101,103,140,164,173,185,209,244,246,268],insert_nod:64,insertion_batteri:[5,6,98,99],insertionelectrod:[99,103],insertionvoltagepair:103,insertsitestransform:246,insid:[12,149,154,167,173,184,187,193,201,244],inspect:[167,173,184,185,205,244],inspir:[122,145,156],instabl:[78,103],instal:[0,1,5,6,69,124,126,140,165,177,204,246,268],install_event_handl:177,install_softwar:116,installzeo:3,instanc:[0,8,9,19,34,61,64,69,76,78,81,89,90,133,137,138,140,144,145,149,154,168,170,173,176,177,178,180,184,186,192,204,205,221,223,234,236,247,256,258,260,268],instanci:[168,176],instanti:[37,61,140,154,167,168,173,178,186,190,219],instead:[0,1,2,3,8,45,47,48,54,60,68,69,71,78,81,85,89,92,94,106,124,130,131,136,138,140,141,144,148,149,156,178,186,202,213,222,223,232,234,236,242,254,258,259,268],institut:2,instruct:[0,2,3,123,124,128,141,180,215],insuffici:[36,60,183],insul:[153,154,210,222,223],int_:252,int_numb:[236,238],int_symbol:236,intact:141,integ:[0,1,18,28,31,36,42,51,58,63,67,69,71,78,85,91,94,100,106,131,133,135,136,137,140,141,144,145,151,154,164,172,177,178,180,186,187,198,204,213,219,221,222,244,247,255],integr:[0,2,3,37,38,50,82,142,149,151,153,154,188,210,222,233],intellig:[0,2,222],intend:[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ner_seitz:154,plot_wirefram:154,plot_with_edo:186,plot_zt_dop:154,plot_zt_mu:154,plot_zt_temp:154,plotchgint:2,plotdo:2,plotkwarg:78,plottabl:167,plottable_from_outfil:167,plotter:[0,5,6,78,81,98,99,147,150,167,210,231,262,268],plt:[47,54,78,81,92,222,255],plu:[69,136],pm3:223,pm_3:223,pmesh:19,pmg:[0,3,5,6,42,108,221,268],pmg_:0,pmg_analyz:[5,6,108],pmg_config:[5,6,108],pmg_default_funct:[0,3,221],pmg_mapi_endpoint:0,pmg_mapi_kei:[2,6,164],pmg_pickle_dump:258,pmg_pickle_load:258,pmg_plot:[5,6,108],pmg_potcar:[5,6,108],pmg_queri:[5,6,108],pmg_serial:258,pmg_structur:[5,6,108,211],pmg_vasp_ex:221,pmg_vasp_psp_dir:3,pmgpickler:258,pmgrc:[0,2,221,268],pmgunpickl:258,pml:137,pn_doping_level:149,png:[23,44,54,64,154,167,169,173,185,234,265],pnma:236,pnnn:240,po4:[48,100,141,260],po_d:223,po_d_gw:223,pohl:154,point1:251,point2:251,point:[0,3,19,21,23,28,36,37,39,40,42,46,47,50,54,55,67,77,78,80,81,82,85,92,94,95,108,122,124,133,136,137,138,140,141,142,148,149,150,154,163,167,168,170,173,180,184,185,186,188,199,201,202,210,211,213,217,221,222,223,227,232,233,236,237,238,240,241,244,250,251,255,259,268],point_a:136,point_b:136,point_defect:[3,39],point_energi:55,point_energy_matrix:55,point_from_bary_coord:251,point_group:[19,124],point_groups_permut:19,pointdefectcompar:85,pointgroup:[0,236,238],pointgroupanalyz:[0,236],pointgroupoper:236,pointop:[80,241],points_distort:21,points_perfect:21,points_scale_factor:154,points_to_add:141,points_to_remov:141,points_wcs_csc:21,points_wcs_ctwcc:21,points_wcs_ctwocc:21,points_wocs_csc:21,points_wocs_ctwcc:21,points_wocs_ctwocc:21,poirier:82,poisson:[50,82,137],poissons_ratio:137,poit:168,polar:[0,5,6,11,45,46,50,57,69,71,133,136,141,142,148,149,150,151,153,168,170,209,213,222,223],polar_decomposit:142,polariz:[126,168],polarizaiton:58,polarizationlattic:58,pole:[69,168],poli:42,polici:[173,177,184],polish:185,pollabl:180,poly_radii_tol_factor:265,polyanion:131,polyfit:54,polygon:[41,81,84],polyhedr:[69,141],polyhedra:[42,69,84],polyhedron:[21,24,42,84,265],polyhedron_indic:42,polym:207,polymorph:92,polynomi:[52,54,94,142,255],polynomialeo:54,polysulfid:84,polytop:[78,81],pomass:221,pool:[0,10,164,248],poor:137,pop:[55,131,202,268],popen:186,popt:250,popul:[0,142,151,154,156,222],porou:[0,69,266],porous_adjust:69,port:[0,253],porter:[48,59],portion:[2,136,142,177],pos:[42,173,186],pos_str:186,poscar:[0,2,6,9,10,67,77,92,94,106,140,151,154,209,221,222,223,268],poscar_filenam:[10,92],poscar_input:209,poscar_output:209,poscar_str:[9,10],poscartransmut:10,posit:[12,28,36,37,40,41,42,51,63,64,67,69,71,72,73,78,83,92,94,100,137,140,141,142,143,152,153,164,167,173,186,193,200,207,219,221,222,225,233,236,242,244,246,247,268],position_atol:138,positivi:153,posix:180,posixpath:260,possibl:[0,2,9,10,12,13,21,23,36,38,41,42,55,60,63,64,67,69,71,74,78,85,89,90,91,92,102,103,130,131,137,140,141,142,148,150,153,154,164,173,177,178,184,186,188,198,207,222,223,232,236,237,244,246,247,258,268],possible_jt_act:73,post:[2,5,6,106,137,149,165,184,213,218,222,268],post_transition_met:131,postdebug:253,posterior:15,posteriori:[0,15],postprocess:[42,141,213,218,222],pot1:187,pot:[77,186,187,222],pot_data:198,pot_dict_from_str:198,pot_fil:187,pot_gga_paw_pb:[3,221],pot_gga_paw_pbe_52:[3,221],pot_gga_paw_pbe_54:221,pot_gga_paw_pw91:[3,221],pot_gga_us_pw91:221,pot_lda_paw:221,pot_lda_paw_52:221,pot_lda_paw_54:221,pot_lda_u:221,pot_string_from_fil:198,potalign:[37,38],potcar:[0,2,58,106,123,124,156,209,221,222,223],potcar_filenam:123,potcar_funct:223,potcar_input:209,potcar_spec:222,potcar_symbol:[156,222,223],potcarcorrect:156,potcarsingl:221,potenti:[0,1,36,37,38,39,41,42,68,69,77,78,81,92,100,103,126,131,141,149,150,154,164,171,187,198,199,200,202,210,222,223,244,266],potential_typ:221,potetin:92,potim:[221,223],potpaw_pb:3,pourbaix:[0,2,41,81,164],pourbaix_diagram:[5,6,11],pourbaix_entri:81,pourbaixdiagram:81,pourbaixentri:81,pourbaixplott:81,pourier_tarantola:[54,82],pouriertarantola:54,powder:45,power2_decreasing_exp:[18,30,31],power2_inverse_decreas:[18,30,31],power2_inverse_power2_decreas:[18,30,31],power2_inverse_powern_decreas:31,power2_tangent_decreas:31,power3_step:31,power:[0,2,3,144,149,150,154,164,167,204,250,268],power_factor_dop:150,power_factor_mu:150,powern:31,powern_decreas:31,powern_parts_step:31,ppmodel:[168,170],ppmodelmod:168,pps:28,pr3:223,pr_3:223,pra:145,practic:[1,54,267],prb:[54,145],prdownload:3,pre:[0,1,47,64,68,72,78,141,144,145,156,164,222,223,247,265,268],preambl:221,prec:[37,42,142,223],prec_set:42,preced:[202,221,223],precfock:223,precis:[0,8,37,42,45,46,78,89,140,141,142,153,209,219,222,223,241,244,254],precond:142,precondit:142,precursor:12,pred_from_comp:89,pred_from_list:89,pred_from_structur:89,predefin:8,predict:[0,42,69,88,89,90,135,162,244],predict_mp:162,predict_structur:162,predictor:[0,221,250],predictor_corrector:221,predictor_corrector_preambl:221,preempt:180,preemption:180,prefactor:31,prefer:[1,2,38,63,69,73,90,94,138,152,164,168,181,184,222,223],prefe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log","Collaborative Github Workflow","Introduction","Requirements","Change log","pymatgen","pymatgen package","pymatgen.alchemy package","pymatgen.alchemy.filters module","pymatgen.alchemy.materials module","pymatgen.alchemy.transmuters module","pymatgen.analysis package","pymatgen.analysis.adsorption module","pymatgen.analysis.aflow_prototypes module","pymatgen.analysis.bond_dissociation module","pymatgen.analysis.bond_valence module","pymatgen.analysis.chemenv package","pymatgen.analysis.chemenv.coordination_environments package","pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies module","pymatgen.analysis.chemenv.coordination_environments.coordination_geometries module","pymatgen.analysis.chemenv.coordination_environments.coordination_geometries_files package","pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder module","pymatgen.analysis.chemenv.coordination_environments.strategy_files package","pymatgen.analysis.chemenv.coordination_environments.structure_environments module","pymatgen.analysis.chemenv.coordination_environments.voronoi module","pymatgen.analysis.chemenv.utils package","pymatgen.analysis.chemenv.utils.chemenv_config module","pymatgen.analysis.chemenv.utils.chemenv_errors module","pymatgen.analysis.chemenv.utils.coordination_geometry_utils module","pymatgen.analysis.chemenv.utils.defs_utils module","pymatgen.analysis.chemenv.utils.func_utils module","pymatgen.analysis.chemenv.utils.math_utils module","pymatgen.analysis.chemenv.utils.scripts_utils module","pymatgen.analysis.cost package","pymatgen.analysis.cost.cost module","pymatgen.analysis.defects package","pymatgen.analysis.defects.core module","pymatgen.analysis.defects.corrections module","pymatgen.analysis.defects.defect_compatibility module","pymatgen.analysis.defects.dilute_solution_model module","pymatgen.analysis.defects.generators module","pymatgen.analysis.defects.thermodynamics module","pymatgen.analysis.defects.utils module","pymatgen.analysis.diffraction package","pymatgen.analysis.diffraction.core module","pymatgen.analysis.diffraction.neutron module","pymatgen.analysis.diffraction.xrd module","pymatgen.analysis.diffusion_analyzer module","pymatgen.analysis.dimensionality module","pymatgen.analysis.elasticity package","pymatgen.analysis.elasticity.elastic module","pymatgen.analysis.elasticity.strain module","pymatgen.analysis.elasticity.stress module","pymatgen.analysis.energy_models module","pymatgen.analysis.eos module","pymatgen.analysis.ewald module","pymatgen.analysis.excitation module","pymatgen.analysis.ferroelectricity package","pymatgen.analysis.ferroelectricity.polarization module","pymatgen.analysis.find_dimension module","pymatgen.analysis.fragmenter module","pymatgen.analysis.functional_groups module","pymatgen.analysis.gb package","pymatgen.analysis.gb.grain module","pymatgen.analysis.graphs module","pymatgen.analysis.hhi package","pymatgen.analysis.hhi.hhi module","pymatgen.analysis.interface module","pymatgen.analysis.interface_reactions module","pymatgen.analysis.local_env module","pymatgen.analysis.magnetism package","pymatgen.analysis.magnetism.analyzer module","pymatgen.analysis.magnetism.heisenberg module","pymatgen.analysis.magnetism.jahnteller module","pymatgen.analysis.molecule_matcher module","pymatgen.analysis.molecule_structure_comparator module","pymatgen.analysis.nmr module","pymatgen.analysis.path_finder module","pymatgen.analysis.phase_diagram module","pymatgen.analysis.piezo module","pymatgen.analysis.piezo_sensitivity module","pymatgen.analysis.pourbaix_diagram module","pymatgen.analysis.quasiharmonic module","pymatgen.analysis.reaction_calculator module","pymatgen.analysis.structure_analyzer module","pymatgen.analysis.structure_matcher module","pymatgen.analysis.structure_prediction package","pymatgen.analysis.structure_prediction.dopant_predictor module","pymatgen.analysis.structure_prediction.substitution_probability module","pymatgen.analysis.structure_prediction.substitutor module","pymatgen.analysis.structure_prediction.volume_predictor module","pymatgen.analysis.substrate_analyzer module","pymatgen.analysis.surface_analysis module","pymatgen.analysis.thermochemistry module","pymatgen.analysis.transition_state module","pymatgen.analysis.wulff module","pymatgen.analysis.xas package","pymatgen.analysis.xas.spectrum module","pymatgen.apps package","pymatgen.apps.battery package","pymatgen.apps.battery.analyzer module","pymatgen.apps.battery.battery_abc module","pymatgen.apps.battery.conversion_battery module","pymatgen.apps.battery.insertion_battery module","pymatgen.apps.battery.plotter module","pymatgen.apps.borg package","pymatgen.apps.borg.hive module","pymatgen.apps.borg.queen module","pymatgen.cli package","pymatgen.cli.feff_input_generation module","pymatgen.cli.feff_plot_cross_section module","pymatgen.cli.feff_plot_dos module","pymatgen.cli.gaussian_analyzer module","pymatgen.cli.get_environment module","pymatgen.cli.pmg module","pymatgen.cli.pmg_analyze module","pymatgen.cli.pmg_config module","pymatgen.cli.pmg_plot module","pymatgen.cli.pmg_potcar module","pymatgen.cli.pmg_query module","pymatgen.cli.pmg_structure module","pymatgen.command_line package","pymatgen.command_line.aconvasp_caller module","pymatgen.command_line.bader_caller module","pymatgen.command_line.critic2_caller module","pymatgen.command_line.enumlib_caller module","pymatgen.command_line.gulp_caller module","pymatgen.command_line.mcsqs_caller module","pymatgen.command_line.vampire_caller module","pymatgen.core package","pymatgen.core.bonds module","pymatgen.core.composition module","pymatgen.core.ion module","pymatgen.core.lattice module","pymatgen.core.libxcfunc module","pymatgen.core.molecular_orbitals module","pymatgen.core.operations module","pymatgen.core.periodic_table module","pymatgen.core.sites module","pymatgen.core.spectrum module","pymatgen.core.structure module","pymatgen.core.surface module","pymatgen.core.tensors module","pymatgen.core.trajectory module","pymatgen.core.units module","pymatgen.core.xcfunc module","pymatgen.dao module","pymatgen.electronic_structure package","pymatgen.electronic_structure.bandstructure module","pymatgen.electronic_structure.boltztrap module","pymatgen.electronic_structure.boltztrap2 module","pymatgen.electronic_structure.cohp module","pymatgen.electronic_structure.core module","pymatgen.electronic_structure.dos module","pymatgen.electronic_structure.plotter module","pymatgen.entries package","pymatgen.entries.compatibility module","pymatgen.entries.computed_entries module","pymatgen.entries.entry_tools module","pymatgen.entries.exp_entries module","pymatgen.ext package","pymatgen.ext.cod module","pymatgen.ext.crystalsai module","pymatgen.ext.jhu module","pymatgen.ext.matproj module","pymatgen.io package","pymatgen.io.abinit package","pymatgen.io.abinit.abiinspect module","pymatgen.io.abinit.abiobjects module","pymatgen.io.abinit.abitimer module","pymatgen.io.abinit.calculations module","pymatgen.io.abinit.db module","pymatgen.io.abinit.events module","pymatgen.io.abinit.flows module","pymatgen.io.abinit.helpers module","pymatgen.io.abinit.launcher module","pymatgen.io.abinit.netcdf module","pymatgen.io.abinit.nodes module","pymatgen.io.abinit.pseudos module","pymatgen.io.abinit.qadapters module","pymatgen.io.abinit.qjobs module","pymatgen.io.abinit.qutils module","pymatgen.io.abinit.scheduler_error_handlers module","pymatgen.io.abinit.scheduler_error_parsers module","pymatgen.io.abinit.tasks module","pymatgen.io.abinit.utils module","pymatgen.io.abinit.works module","pymatgen.io.abinit.wrappers module","pymatgen.io.adf module","pymatgen.io.aiida module","pymatgen.io.ase module","pymatgen.io.atat module","pymatgen.io.babel module","pymatgen.io.cif module","pymatgen.io.cssr module","pymatgen.io.exciting package","pymatgen.io.exciting.inputs module","pymatgen.io.feff package","pymatgen.io.feff.inputs module","pymatgen.io.feff.outputs module","pymatgen.io.feff.sets module","pymatgen.io.fiesta module","pymatgen.io.gaussian module","pymatgen.io.lammps package","pymatgen.io.lammps.data module","pymatgen.io.lammps.inputs module","pymatgen.io.lammps.outputs module","pymatgen.io.lammps.utils module","pymatgen.io.lmto module","pymatgen.io.lobster module","pymatgen.io.nwchem module","pymatgen.io.phonopy module","pymatgen.io.prismatic module","pymatgen.io.pwscf module","pymatgen.io.qchem package","pymatgen.io.qchem.inputs module","pymatgen.io.qchem.outputs module","pymatgen.io.qchem.sets module","pymatgen.io.qchem.utils module","pymatgen.io.shengbte module","pymatgen.io.vasp package","pymatgen.io.vasp.inputs module","pymatgen.io.vasp.outputs module","pymatgen.io.vasp.sets module","pymatgen.io.xcrysden module","pymatgen.io.xr module","pymatgen.io.xyz module","pymatgen.io.zeopp module","pymatgen.optimization package","pymatgen.optimization.linear_assignment module","pymatgen.optimization.linear_assignment_numpy module","pymatgen.phonon package","pymatgen.phonon.bandstructure module","pymatgen.phonon.dos module","pymatgen.phonon.plotter module","pymatgen.symmetry package","pymatgen.symmetry.analyzer module","pymatgen.symmetry.bandstructure module","pymatgen.symmetry.groups module","pymatgen.symmetry.maggroups module","pymatgen.symmetry.settings module","pymatgen.symmetry.site_symmetries module","pymatgen.symmetry.structure module","pymatgen.transformations package","pymatgen.transformations.advanced_transformations module","pymatgen.transformations.defect_transformations module","pymatgen.transformations.site_transformations module","pymatgen.transformations.standard_transformations module","pymatgen.transformations.transformation_abc module","pymatgen.util package","pymatgen.util.convergence module","pymatgen.util.coord module","pymatgen.util.coord_cython module","pymatgen.util.io_utils module","pymatgen.util.num module","pymatgen.util.plotting module","pymatgen.util.provenance module","pymatgen.util.sequence module","pymatgen.util.serialization module","pymatgen.util.string module","pymatgen.util.testing module","pymatgen.util.typing module","pymatgen.vis package","pymatgen.vis.plotters module","pymatgen.vis.structure_chemview module","pymatgen.vis.structure_vtk module","References","Active Core Team","Overview"],titleterms:{"new":2,The:268,abiinspect:167,abinit:[166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187],abiobject:168,abitim:169,about:2,aconvasp_cal:122,activ:267,add:2,adf:188,adsorpt:12,advanced_transform:244,aflow_prototyp:13,aiida:189,alchemi:[7,8,9,10,268],alumni:267,analysi:[11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,266,268],analyz:[71,100,236],anoth:268,api:[2,268],app:[98,99,100,101,102,103,104,105,106,107],as_dict:268,ase:190,assimil:268,atat:191,babel:192,bader:3,bader_cal:[123,266],bandstructur:[148,232,237],base:3,basic:268,batteri:[99,100,101,102,103,104],battery_abc:101,boltztrap2:150,boltztrap:149,bond:130,bond_dissoci:14,bond_val:15,borg:[105,106,107,268],calcul:[170,268],can:268,chang:[0,2,4],check:227,chemenv:[16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],chemenv_config:26,chemenv_error:27,chemenv_strategi:18,cif:193,cite:2,cli:[108,109,110,111,112,113,114,115,116,117,118,119,120],cluster:2,cod:161,code:1,cohp:151,collabor:1,command:2,command_lin:[121,122,123,124,125,126,127,128,266],compat:[1,156,266,268],composit:131,computed_entri:157,conda:[2,3],config:268,content:[6,7,11,16,17,20,22,25,33,35,43,49,57,62,65,70,86,96,98,99,105,108,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],contribut:2,contributor:267,converg:250,conversion_batteri:102,coord:251,coord_cython:252,coordination_environ:[17,18,19,20,21,22,23,24],coordination_geometri:19,coordination_geometries_fil:20,coordination_geometry_find:21,coordination_geometry_util:28,copyright:2,core:[36,44,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,152,266,267],correct:37,cost:[33,34],creat:[3,268],critic2_cal:124,crystalsai:162,cssr:194,dao:146,data:[204,268],decod:268,defect:[35,36,37,38,39,40,41,42],defect_compat:38,defect_transform:245,defs_util:29,depend:3,develop:[2,3],development:3,diagram:268,diffract:[43,44,45,46],diffusion_analyz:47,dilute_solution_model:39,dimension:48,doc:2,document:2,dopant_predictor:87,dos:[153,233],effect:2,elast:[49,50,51,52],electronic_structur:[147,148,149,150,151,152,153,154],energi:268,energy_model:53,entri:[155,156,157,158,159,266,268],entry_tool:158,enumlib:3,enumlib_cal:125,environ:3,eos:54,event:172,ewald:55,exampl:[2,268],excit:[56,195,196],exp_entri:159,ext:[160,161,162,163,164],extern:267,feff:[197,198,199,200,266],feff_input_gener:109,feff_plot_cross_sect:110,feff_plot_do:111,ferroelectr:[57,58],fiesta:201,file:268,filter:8,find_dimens:59,flow:173,fragment:60,from:2,from_dict:268,func_util:30,functional_group:61,gaussian:202,gaussian_analyz:112,gener:40,get:2,get_environ:113,gga:268,github:[1,3],grain:63,graph:64,group:238,guidelin:1,gulp_cal:126,heisenberg:72,helper:174,hhi:[65,66],high:268,hive:106,how:2,indic:2,input:[196,198,205,215,221],insertion_batteri:103,instal:[2,3,227],integr:268,interfac:67,interface_react:68,introduct:2,io_util:253,ion:132,jahntel:73,jhu:163,lammp:[203,204,205,206,207],lattic:133,launcher:175,librari:3,libxcfunc:134,licens:2,line:2,linear_assign:229,linear_assignment_numpi:230,linux:3,lmto:208,lobster:209,local_env:69,log:[0,2,4],mac:3,maggroup:239,magnet:[70,71,72,73],make:268,manual:268,materi:[9,268],matgeni:2,math_util:31,matproj:[164,266,268],mcsqs_caller:127,method:268,mix:268,mode:3,modifi:268,modul:[6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265],molecul:268,molecular_orbit:135,molecule_match:74,molecule_structure_compar:75,montyencod:268,more:2,netcdf:176,neutron:45,nmr:76,node:177,non:3,note:268,num:254,nwchem:210,offlin:2,onli:[2,3],ons:2,openbabel:3,oper:136,optim:[228,229,230],option:3,osx:3,output:[199,206,216,222],overview:268,packag:[6,7,11,16,17,20,22,25,33,35,43,49,57,62,65,70,86,96,98,99,105,108,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],path_find:[77,266],periodic_t:137,phase:268,phase_diagram:78,phasediagram:266,phonon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\ No newline at end of file
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,124,126,128,130,131,133,136,137,138,139,140,141,142,143,148,149,150,151,152,153,154,156,157,158,159,164,167,168,169,170,171,173,175,176,177,178,181,184,185,186,187,188,190,192,193,196,198,199,200,201,202,204,205,208,209,210,211,213,217,218,219,221,222,223,224,225,227,232,234,236,238,242,244,246,247,251,253,254,255,259,260,263,264,265],"enum":[0,3,63,71,124,134,137,152,168,221,244],"export":[2,3,158,175,204,226,256],"fe\u2082o\u2083":259,"final":[0,3,14,36,38,46,58,68,78,82,83,84,88,94,123,124,127,133,141,157,164,173,177,184,185,186,188,202,207,218,222,223,244,255,268],"float":[0,1,8,9,12,15,18,34,36,37,38,41,42,44,45,46,47,48,50,51,53,54,55,58,63,64,67,68,69,71,72,73,78,80,81,82,83,84,85,87,90,91,92,93,95,100,101,102,124,126,128,130,131,133,136,137,138,139,140,141,142,143,144,148,149,151,152,153,154,156,157,158,163,164,167,180,181,188,192,193,198,200,204,205,207,209,210,211,213,218,219,221,222,223,225,227,234,236,237,238,240,241,244,247,251,254,255,259,263,264,265],"function":[0,1,2,3,10,12,14,18,27,28,30,37,41,42,48,50,51,54,55,58,59,60,61,63,64,67,68,69,71,77,78,81,82,84,85,88,89,92,100,108,122,127,131,133,134,135,137,139,140,141,142,143,144,145,148,149,150,152,153,154,156,158,164,167,168,170,171,173,175,177,178,183,184,185,186,188,192,193,198,199,202,207,209,210,213,218,221,222,223,227,230,232,233,234,238,244,250,253,254,255,259,260,263,264,266,267,268],"gra\u017euli":161,"import":[0,1,2,3,55,60,61,64,69,133,140,149,158,169,173,177,178,179,181,184,220,221,226,244,256,268],"int":[0,10,12,18,36,37,42,44,47,48,50,54,55,58,60,61,63,64,67,69,71,80,81,84,85,87,91,92,94,107,127,128,131,133,136,137,138,140,141,142,143,148,149,151,153,154,161,163,164,173,175,177,178,180,188,192,198,199,200,204,205,206,207,208,209,210,217,219,221,222,223,236,238,242,244,246,247,255,259,265],"j\u00f3nsson":266,"jes\u00fa":150,"long":[0,1,37,75,137,218,222,268],"lua\u00f1a":124,"mart\u00edn":124,"n\u00f8rskov":145,"new":[0,1,3,9,10,36,41,44,47,48,54,55,59,60,63,64,67,76,77,85,88,89,90,101,103,124,133,140,141,142,144,150,152,154,164,167,168,169,173,175,177,178,180,184,185,186,187,188,202,209,215,217,221,222,223,234,247,255,256,268],"null":69,"okuli\u010d":161,"pend\u00e1":124,"public":[1,2,13,37,48,141,184,223,255,266],"quir\u00f3":161,"return":[0,1,2,6,8,9,10,12,13,14,15,18,19,21,23,24,28,31,34,36,37,38,39,41,42,44,45,46,47,48,50,51,52,53,54,55,58,60,61,63,64,67,68,69,71,72,73,74,76,77,78,80,81,82,83,84,85,87,88,89,90,91,92,94,95,100,101,102,103,104,106,107,123,124,126,127,128,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,148,149,150,151,152,153,154,156,157,158,159,161,162,164,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,190,191,192,193,194,196,198,199,200,201,202,204,206,207,208,209,210,211,212,213,218,219,221,222,223,224,225,226,227,230,232,233,234,236,237,238,240,241,242,244,245,246,247,248,250,251,252,253,254,255,256,258,259,260,263,264],"rodr\u00edguez":136,"short":[37,69,130,173,223,227],"static":[0,9,10,63,64,68,69,72,73,75,77,81,82,83,84,88,92,94,102,130,131,133,136,137,142,149,152,164,168,178,180,183,185,188,190,191,192,193,194,196,198,199,200,202,209,210,213,215,216,221,222,223,225,226,227,240,244,247,255,256,260,268],"super":[56,64,91,97,139,141,185],"switch":[0,1,154,173,184,244],"throw":[50,79,222,247],"transient":164,"true":[8,9,10,12,14,18,19,21,23,24,28,32,36,37,38,41,42,44,45,46,48,50,53,54,58,60,61,63,64,67,68,69,71,73,74,75,77,78,79,81,82,85,88,89,90,92,94,95,100,101,102,103,106,124,125,126,128,131,133,134,136,137,138,140,141,142,143,148,149,150,151,152,153,154,156,158,164,167,168,169,170,173,175,176,177,178,182,183,184,185,186,187,188,192,193,198,200,201,202,204,205,207,208,209,211,216,218,221,222,223,225,232,234,236,237,238,242,244,246,247,248,250,251,252,253,254,255,259,260,264,265],"try":[0,3,9,40,50,60,64,71,124,149,153,164,175,178,184,221,222,244,265],"var":[173,184],"void":[0,227],"while":[8,18,23,28,38,58,63,69,74,75,92,100,140,141,154,185,186,204,206,221,222,227,247,268],AND:[2,8,137,141,185,222,223],ASE:[0,3,54,190],Added:0,And:[1,69,222],Axes:[44,54,154,169,173,255],BNS:140,BUT:2,Being:58,Bus:180,But:[0,2,42,63,227,236,244,246,268],DLS:90,DOS:[0,111,139,149,150,153,154,164,186,209,233,234,263],Dos:[41,149,150,153,154,164,209,211,233,234,263,268],ECs:50,EOS:[0,54],EPS:[154,202,234,263],FMS:200,FOR:[2,141],For:[0,1,2,3,8,9,15,18,23,28,34,36,37,42,46,47,48,50,58,63,64,67,69,78,83,84,85,87,91,92,93,94,101,102,103,106,124,126,130,131,132,133,136,137,140,141,144,145,149,152,153,154,156,157,158,159,160,162,164,168,169,171,178,182,186,192,202,205,209,210,213,218,221,222,223,227,236,238,244,246,247,256,262,263,265,266,268],GBs:[63,141,244],Gus:[0,3,246],Has:[41,78,106,140,198,222,247],IDE:1,IDs:164,Ising:53,Its:[173,211],MOs:135,NOT:[2,34,36,42,64,78,204,222,223],Near:164,Not:[3,78,140,168,180,204,244],ONE:204,OPs:[0,69],OSes:3,One:[2,28,48,59,101,154,167,168,177,221,222,227,234,236,244],PBS:[180,183,184],PDs:[0,78,92],POS:208,PRs:0,Pls:0,QPS:184,RLS:90,RMS:[0,85],SQS:[127,244],Such:75,Sys:180,THE:[2,141],THe:153,That:[63,69,84,139],The:[0,1,2,3,6,8,9,10,12,13,15,18,19,21,23,24,28,35,38,39,40,41,42,44,45,46,47,48,50,53,54,55,56,58,60,61,63,64,66,67,68,69,74,75,77,78,79,81,82,83,84,85,87,88,89,91,92,93,94,95,97,101,102,103,104,105,106,107,123,124,127,130,131,132,133,135,136,137,138,139,140,141,143,144,145,146,148,149,150,151,152,153,154,156,157,161,162,163,164,167,168,172,173,175,176,177,178,179,180,181,183,184,185,186,188,190,192,193,198,199,200,201,202,204,205,206,207,208,209,210,211,213,215,218,221,222,223,227,229,230,232,233,234,235,236,237,238,242,243,244,246,247,249,253,254,255,256,260,262,263,265,266],Their:[74,130],Then:[1,3,72,236,260],There:[0,1,2,64,89,92,106,133,140,141,148,152,175,209,232,244,268],These:[2,19,48,50,55,64,78,94,162,164,193,202,209,222,223,268],USE:[2,247],Use:[0,1,2,44,45,46,47,50,55,64,69,94,131,134,136,138,140,141,152,156,158,162,164,167,168,173,175,177,178,186,192,221,223,244,246,247,256,265],Used:[47,53,78,81,92,123,143,149,152,173,200,202,222,240,247],Useful:[0,2,36,47,63,81,85,92,95,124,131,138,140,141,144,152,154,164,167,173,178,184,198,205,213,221,222,227,236,247,265],Uses:[10,37,54,69,92,94,107,167,168,192,213,221,222,223,236,254],Using:[67,140,145,156,162,164],WILL:141,WITH:[2,141,148,232,247],Will:[0,55,64,71,73,141,198,209,244,247,259],With:[0,1,2,3,69,193,236,250],XAS:[0,263],XES:200,Yes:185,__abinitflow__:173,__call__:67,__class__:[177,268],__eq__:260,__future__:1,__getitem__:131,__hash__:0,__init__:[10,50,51,52,56,63,76,79,80,97,139,140,141,142,161,172,173,215,223],__main__:0,__module__:268,__name__:[0,177,268],__new__:[50,51,52,76,79,80,142,144],__rmul__:0,__slots__:258,__str__:[198,202,215,221],_additional_condit:18,_angle_cutoff:18,_bp:222,_calculate_possible_shift:141,_cgraph:0,_continuous_symmetry_measure_cutoff:18,_defect_sit:3,_del:200,_den:[184,185],_distance_cutoff:18,_ev:222,_extrema_df:42,_get_nn_shell_info:69,_io:[169,173,177,178],_map:78,_materialsproject:[164,256],_matrix:55,_parse_bool:221,_parse_float:221,_parse_int:221,_parse_list:221,_parse_str:221,_path:168,_pickl:258,_proj_height:141,_reset:184,_set:223,_setup:186,_site:140,_sp:89,_threshold:89,a1604:50,a1826:50,a1fdb1089d0727f415416ec8082246ba:223,a1fit:188,a2b2:0,a2c9485ea86b2a7cf175077e6e5c7b3:223,a32:63,a35:69,a38:63,a395eb3aaf2fcab12fac3030a1146f61:223,a40:63,a45:63,a604ea3c6a9cc23c739b762f625cf449:223,a67:223,a6fd9a46aec185f4ad2acd0cbe4ae2fa:223,a74:223,a9182d436a13194b744640ac940ab9b0:223,a_1:[133,140,222],a_1a:222,a_1c:222,a_1p:222,a_2:[133,140],a_3:[133,140],a_i:46,a_pw:222,a_tot:222,a_vib:82,a_xb_1:13,a_xi:254,a_xx:254,a_xz:254,a_yi:254,a_yz:254,a_zz:254,aa_i:28,ab_shift:[63,67,244],abandon:0,abbrevi:[71,150,233],abc3:131,abc:[2,44,51,54,101,131,133,138,140,142,144,154,158,167,169,173,178,184,185,198,234,238,246,247,260],abcd:28,abcdefghijklmnopqrstuvwxyz0123456789:250,abcissa:202,abi_extens:185,abi_splitext:185,abicrit:[177,184],abiinput:172,abiinspect:[5,6,165,166],abil:[0,41],abinit:[0,2,5,6,133,145,164,165,267],abinit_build:184,abinitbuild:184,abinitcriticalwarn:172,abiniterror:172,abinitev:[172,177],abinitflow:185,abinithead:176,abinitinput:[173,184,186],abinitio:0,abinitixc_to_libxc:145,abinittask:[173,184,186],abinittim:169,abinittimerpars:[169,173,184,186],abinittimerparsererror:169,abinittimersect:169,abiobject:[5,6,165,166],abiopen:177,abipi:[170,173,175,184,186],abirun:[170,173],abitim:[5,6,165,166],abivalid:173,abivalidate_input:173,abivar:[63,133,140,168],abl:[3,41,58,63,74,137,167,244],abo3:[78,268],abo:[169,184],abo_:184,aborpt:199,abort:[172,180],about:[0,1,21,23,28,34,63,67,69,92,124,136,140,141,145,148,149,153,209,222,226,256],abov:[1,2,3,12,14,18,50,61,67,68,73,78,81,82,141,168,223,247,268],abs:[58,81,131,153,222,244,251,254],abs_cap:254,abs_tol:153,abscissa:202,absenc:193,absent:50,absent_sym:50,absolut:[1,2,28,36,44,45,46,71,78,101,131,136,141,142,144,153,173,175,177,184,185,186,187,199,222,223,236,237,251,254],absorb:[141,164,198,199,200,244],absorbing_atom:[198,199,200],absorbing_el:164,absorpt:[0,141,164,199,200,222,263],absorption_speci:97,abstractchemenvalgorithm:19,abstractchemenverror:27,abstractchemenvstrategi:18,abstractcompar:85,abstractdiffractionpatterncalcul:[44,45,46],abstractdron:[106,107],abstractelectrod:[101,102,103,104],abstracterror:183,abstracterrorpars:183,abstractfeffinputset:200,abstractgeometri:21,abstractmolatommapp:74,abstractratiofunct:30,abstractstructurefilt:[8,9],abstracttransform:[244,245,246,247,248],abstractvoltagepair:[101,102,103],abund:18,ac_:3,acc_err:149,acc_factor:[53,55],acc_thr:149,acceler:266,accept:[1,10,133,152,153,168,173,177,178,181,184,186,204,217,222,234,246,247,251,255],acceptor:37,access:[0,26,69,161,164,173,178,180,185,209,213,218,221,222,247,253],accommod:100,accomod:141,accord:[12,19,48,50,51,52,67,69,76,78,79,80,81,92,130,137,140,142,148,149,169,176,178,184,204,207,211,222,232,236,254],accordingli:[47,75,141],account:[0,1,19,36,41,42,46,69,71,92,133,135,140,141,148,149,150,173,186,222,232,236,251,252],accur:[0,63,64,71,149,164,222,223,244,246],accuraci:[0,55,149,170,178,223,227,246,247],acel:[133,168],acet:61,achiev:[142,149,173,219,247],acid:161,acknowledg:[2,75,222,266],aconvasp:[3,122],aconvasp_cal:[3,5,6,121],aconvasperror:122,acoust:[80,232],across:[58,69,78,101,102,103,131,200,223],acs:[21,41,71,81,162],act:[84,136],acta:[19,63,69,133],actanid:[131,137],actinoid:[131,137],action:[0,2,4,172,177,180],activ:[2,3,73,95,100,152,180,186,255],actual:[0,8,41,42,55,58,60,63,64,67,69,78,100,109,133,137,138,140,141,143,157,162,173,198,201,213,221,222,236,242,246,247,248,260,268],actual_kpoint:222,actual_kpoints_weight:222,adam:133,adap:37,adapt:[1,3,37,54,71,92,173,182,210,255],adaptor:[0,125,189,190,192,268],add:[0,1,3,9,10,12,15,21,23,28,44,50,51,54,55,60,63,64,67,73,78,92,104,131,139,140,141,143,150,151,154,158,164,167,169,173,175,177,185,186,188,192,211,215,217,221,223,227,234,244,246,255,258,263,265,268],add_adsorb:12,add_adsorbate_atom:141,add_bond:265,add_charges_from_oxi_state_guess:131,add_cohp:154,add_cohp_dict:154,add_com:175,add_config_var:116,add_coord_geom:23,add_dens:153,add_dep:177,add_do:[154,234],add_dos_dict:[154,234],add_edg:[64,265],add_electrod:104,add_emptylin:175,add_eq:50,add_error:184,add_fac:265,add_fig_kwarg:[154,255],add_filechild:177,add_flow:175,add_gg_gap:174,add_hydrogen:192,add_label_cycl:167,add_lin:[175,265],add_m_list:55,add_neighbors_set:23,add_opposit:19,add_opt:188,add_oxidation_st:55,add_oxidation_state_by_el:140,add_oxidation_state_by_guess:140,add_oxidation_state_by_sit:140,add_oxidation_state_by_site_fract:15,add_partial_spher:265,add_pick:265,add_picker_fix:265,add_polyhedron:265,add_sit:265,add_site_properti:140,add_sourc:23,add_spectra:263,add_spectrum:263,add_spin_by_el:140,add_spin_by_sit:140,add_strategy_visualization_to_subplot:18,add_subkei:188,add_tag:10,add_text:265,add_triangl:265,addadsorbatetransform:244,addditiona:186,added:[0,2,3,9,23,36,40,42,47,51,61,64,90,101,131,141,154,164,170,173,177,185,186,192,204,211,217,223,234,244,246,259,264,268],added_kpoint:223,adding:[12,61,140,141,184,217,223,244,268],addit:[0,2,3,9,10,18,21,23,29,36,42,54,60,63,64,67,83,91,126,131,132,136,139,140,141,144,157,164,173,176,193,202,204,210,211,223,227,232,244,256,259],addition:[14,223],additional_argu:2,additional_condit:[18,21,23,24,26],additional_info:[18,19],additionalcondit:[18,23,24,29],additionalconditionint:18,addon:92,address:[0,164,266],addsitepropertytransform:246,adengz:0,adf:[0,5,6,165],adf_run:188,adfinput:188,adfinputerror:188,adfkei:188,adfoutput:188,adfoutputerror:188,adftask:188,adjac:[48,58,101,102,103],adjacent_onli:[102,103],adjust:[58,67,69,92,149,156,164,200,207,222],administr:180,adn:3,adopt:[1,2,222],ads_coord:12,ads_entries_dict:92,ads_entry1:92,ads_entry2:92,adsorb:[12,92,141,244],adsorb_both_surfac:12,adsorbatesitefind:[0,12,244],adsorpt:[0,5,6,11,92,141],adsorption_sit:12,adsorptionsitefind:244,adv:223,advanc:[2,3,124,152,156,164,244,266,268],advanced_transform:[3,5,6,243],advantag:[0,2],advis:[37,244,267],aea79f322180fa6f0bfa74cb2a156dcf:223,aecar0:[123,124],aecar2:[123,124],aeccar0:[123,124],aeccar2:[123,124],aeccar:[123,124],affect:[0,140],affin:[136,140],affine_matrix:136,affine_transform:136,affine_transformation_matrix:136,afloat:259,aflow:[0,13,106],aflow_prototyp:[5,6,11],aflowlib:122,aflowprototypematch:13,afm:[71,72,168],afm_:72,afm_struct:72,afresh:69,after:[2,3,9,14,21,36,41,42,47,53,55,63,64,67,85,89,136,137,141,149,154,164,170,177,184,186,187,193,202,222,244,253],afterward:3,ag_sv_gw:223,again:[3,156,164,256],against:[0,37,47,92,130,156,164],agent:[0,164],aggreg:42,agka1:46,agka2:46,agka:46,agkb1:46,agr:95,agte3:81,aid:[1,260],aiida:[0,5,6,165],aiidastructureadaptor:189,aim:[60,73,192,244],aimd:47,ainput:184,ajjackson:0,aka:[60,133],al2o3:164,al3:244,al3sc:39,al_gw:223,al_structur:168,alan:[0,266,267],alarm:180,alat:208,albalu:0,albeit:185,alchemi:[0,2,5,6,246,247,248,260],alexand:253,algebra:41,algo:[0,21,23,55,64,90,133,168,192,223,246,247],algo_:[246,247],algo_best_first:[55,246,247],algo_complet:[55,246,247],algo_enumer:[246,247],algo_fast:[55,246,247],algo_time_limit:55,algorith:168,algorithm:[0,1,8,12,15,19,21,23,40,41,42,45,46,48,50,58,61,63,64,67,69,72,77,78,84,85,88,89,100,123,133,140,141,153,168,170,173,184,192,210,221,222,223,229,230,236,244,246,247,251,266],algorithm_typ:19,alia:[64,69,76,140,144,167,169,172,173,175,176,177,184,221,234],alias:[0,2,145],align:[12,21,28,37,67,76,133,154,198,221,227,259],align_x:67,aligned_lattic:133,aligned_matrix:133,alio_tol:244,alireza:0,alkali:[131,137,223],alkalin:[131,137],all:[0,1,2,3,8,9,10,12,14,15,18,19,21,23,28,29,31,36,37,38,41,42,44,45,46,47,48,50,54,55,56,58,60,61,63,64,67,68,69,71,74,77,78,81,83,85,89,90,91,92,94,95,97,99,100,101,102,103,104,106,124,125,130,131,133,137,138,139,140,141,142,143,144,148,149,150,151,152,153,154,156,157,158,159,161,163,164,167,168,169,173,175,176,177,178,180,182,183,184,185,186,188,192,193,200,201,202,2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235,236,244,255,268],ethyl:61,etot:[167,184],etsf:176,etsf_read:176,eu2:[0,223],eu3:[0,223],eu_2:223,euler:51,ev_to_k:42,ev_to_kj_per_mol:68,eval:[2,222],evalu:[30,38,39,42,50,55,69,81,82,173,185,188,209,210,222],evaluate_rpn:185,evaluate_wavefunc:222,evan:128,even:[0,3,48,59,77,85,101,107,131,140,164,168,184,221,222,238,246,247,251,268],event:[2,5,6,165,166,173,177,180,184,255,256,265],event_class:172,event_handl:177,eventhandl:177,eventreport:172,eventspars:172,eventsparsererror:172,eventu:[14,141],everi:[2,9,41,47,84,124,133,149,175,177,183,185,186,205,209,222],everyth:[1,148,268],evolut:[78,167,173,184],ewald:[0,1,5,6,11,37,42,53,244,246,247,268],ewaldelectrostaticmodel:53,ewaldminim:55,ewaldpap:55,ewaldsum:53,ewaldsumm:[0,53,55],ex_mat:72,ex_param:[72,128],exact:[8,74,75,85,140,141,158,221,223,238],exactdens:188,exactli:[0,63,85,141,149,168,221,247],exaf:[139,198,199,200],exampl:[0,1,3,8,9,10,15,21,34,36,41,47,48,55,58,64,69,74,78,83,84,85,87,92,93,94,100,101,102,103,106,109,130,131,133,136,137,139,140,141,144,145,149,150,153,154,156,157,158,160,164,168,169,171,173,177,178,185,186,200,202,205,210,213,217,218,220,221,222,223,225,236,240,244,246,247,251,255,256,262,263,265],exc:172,exc_dft_opt:201,exc_info:177,exc_typ:168,exce:[85,244],exceed:[180,183],excel:[0,123,236,266],except:[0,1,27,42,51,54,64,69,77,78,83,85,89,122,125,126,131,136,137,140,144,149,153,156,164,167,169,172,175,177,180,185,186,188,193,198,210,213,218,221,222,223,236,250],exception:89,exception_on_bad_xml:222,excess:37,exchamiltonian:168,exchang:[0,64,71,72,128,134,145,168,170,188,200,210],exchange_const:64,excit:[5,6,11,165,199,201,202,210],excitationspectrum:[56,210],excitinginput:196,exclud:[8,21,37,42,78,80,140,141,156,173,178,183,207,265],exclude_dir:[173,178],exclude_ext:173,exclude_nod:[183,184],exclude_ok_task:173,exclude_wildard:186,exclude_wildcard:186,excluded_atom:21,excluded_bonding_el:265,exclus:[145,173,177],exe:3,exec_arg:184,execut:[3,8,123,124,126,128,150,161,172,173,175,180,184,187,208,253,260],execwrapp:187,exelf:200,exercis:222,exhf:222,exist:[0,2,3,8,19,21,23,37,38,41,42,47,50,54,64,71,75,77,78,81,85,89,130,140,141,151,152,154,173,177,178,184,185,186,188,200,205,208,221,250,255,268],existing_structur:8,exit:[77,173,175,180,184,185,222],exitcod:180,exp:[42,46,47,50,164,211,222],exp_cos_aa:69,exp_entri:[5,6,155],expand:[0,1,3,63,174,186,244],expand_tim:[63,244],expans:[50,137,142],expect:[1,3,8,28,39,47,63,69,73,94,126,137,144,152,153,179,223,236,237,244],expected_charg:14,expens:[0,55,222,247],expentri:[159,164],experi:[3,205],experiment:[15,21,69,78,93,154,159,164,173,233,244,247],exphp:0,expir:180,explain:[0,149,154,156],explan:[0,63,131,154,156,164,180,268],explicit:[18,21,167,168,177,186,192,221,222],explicit_indic:21,explicit_optimized_permut:19,explicit_path:168,explicit_permut:19,explicitli:[1,48,69,180],explicitpermutationsalgorithm:19,explictli:28,explor:[2,42,124,268],expnorm:42,expon:[69,149],exponenti:[42,250],export_envar:175,export_msdt:47,expr:50,express:[2,28,50,58,133,142,183,184,185,186,218,222],expression1:185,expression2:185,expressionn:185,exsit:188,ext:[0,5,6,169,173,177,178,185,186,268],extend:[9,10,12,34,42,50,52,76,77,131,136,139,140,143,153,157,159,173,176,184,200,217,233,244,260,268],extend_collect:10,extend_structur:64,extend_transform:[9,10],extens:[0,2,3,47,64,95,106,137,138,140,154,159,169,173,177,178,184,185,186,201,207,222,268],extern:[0,3,160,177,180,221,256,258],extra:[2,38,41,71,76,100,168,170,185,212,222,227,250,264],extra_abivar:170,extra_nn_info:69,extract:[0,3,9,63,64,67,71,72,140,141,149,167,169,172,184,211,222,234,244,268],extract_clust:140,extract_metadata:183,extracted_vasp_potcar:3,extrapol:[47,153],extrapolate_reciproc:250,extrapolate_simple_reciproc:250,extras_requir:2,extrem:[0,2,40,55,63,90,140,154,164,222,223,234,238,246,247,263,268],extrema:[42,94,149],extrema_coord:42,extrema_df:42,extremum_icohpvalu:151,extrins:[100,101],eye:[133,168],f1d01e845dccc52d448679911f301a73:223,f4ff16a495dd361ff5824ee61b418bb0:223,f_1:[152,154],f_2:[152,154],f_3:[152,154],f_constant:202,f_gw:223,f_h:223,f_j:46,f_lower:28,f_upper:28,f_x:153,f_xyz:153,f_xz:153,f_y:153,f_yz:153,f_z:153,fac_aa:69,face:[12,19,69,84,91,227,265],face_dist:69,faces_color_overrid:32,facet:[19,21,28,44,46,69,78,84,91,92,95,133,251],facili:181,facilit:[154,173,177,234],facmaxdl:42,fact:[2,69,148,232,268],factor:[0,15,21,31,36,42,45,46,47,63,69,81,83,91,95,131,133,140,141,142,144,149,150,154,208,211,222,223,234,247,265],factori:[51,167,170,183],faghaninia:0,fail:[0,1,3,8,38,60,64,82,137,153,173,180,183,184,221],failur:[0,180,183],fairli:[1,2,3,64,236,265],faith:240,fake:[150,169],fall:[78,133,140,244,265],fallback:21,fallback_to_sourc:18,fals:[0,8,9,10,12,14,18,19,21,23,28,31,32,37,38,40,41,42,44,45,46,47,48,50,51,54,55,58,60,61,63,64,67,68,69,71,73,77,78,81,82,84,85,87,88,89,90,91,92,94,95,101,102,106,123,124,125,126,128,131,133,135,136,138,140,141,142,143,148,149,150,151,153,154,156,158,164,167,168,169,172,173,17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188,192,193,198,200,201,204,206,207,208,209,210,211,212,213,218,221,222,223,232,234,236,238,244,245,246,247,248,250,251,254,255,259,265,266,268],generate_adsorption_structur:12,generate_all_slab:141,generate_defect_structur:36,generate_displac:211,generate_entry_label:81,generate_full_symmop:236,generate_interfac:67,generate_potcar:118,generate_pseudo:50,generate_r_and_g_vec:42,generate_reciprocal_vectors_squar:42,generate_sl_transformation_set:91,generate_substitution_structur:12,generate_surface_vector:91,genfmt:198,genom:[2,6,266],genrecip:42,geo_subkei:188,geoffroi:[0,2,21,237,267],geograph:66,geom:205,geom_opt_max_cycl:217,geometr:[69,74,77,100,266],geometri:[0,19,21,23,51,60,91,188,192,202,210,217,266],geometrically_equidist:18,geometry_info:18,geometry_opt:210,geometryoptim:188,geomstep:192,georg:[149,150],gerbrand:[2,77],germain:[0,154,267],get:[0,3,6,12,13,15,18,23,34,36,37,38,41,42,47,48,50,51,58,63,67,68,69,72,73,74,78,81,82,87,92,95,101,103,122,123,126,130,131,133,137,138,140,141,142,149,150,151,152,153,154,162,163,164,171,173,177,179,180,184,186,193,199,202,208,209,221,222,223,233,234,236,241,244,246,247,251,256,259,263,268],get_00t_magmom_with_xyz_saxi:152,get_13_bond:75,get_absorbing_atom_symbol_index:198,get_adjusted_fermi_level:222,get_all_anonymous_map:85,get_all_chempot:78,get_all_dist:133,get_all_entri:103,get_all_functional_group:61,get_all_neighbor:[0,140],get_all_neighbors_old:140,get_all_nn:69,get_all_nn_info:69,get_all_sit:69,get_all_statu:186,get_all_substr:164,get_all_voronoi_polyhedra:69,get_allowed_speci:89,get_alpha:222,get_analysi:73,get_analysis_and_structur:73,get_angl:[140,251],get_arrhenius_plot:47,get_asum_fcm:80,get_atom:190,get_atom_map:198,get_atomic_fract:[2,131],get_available_model:162,get_average_along_axi:222,get_average_eff_mass:149,get_average_voltag:101,get_ax3d_fig_plt:255,get_ax_fig_plt:255,get_axarray_fig_plt:255,get_axis_grid:222,get_band_gap:148,get_band_structur:[150,222],get_band_structure_from_vasp_multiple_branch:222,get_bandstructur:209,get_bandstructure_by_material_id:[164,268],get_basic_functional_group:61,get_bec_oper:80,get_best_electronegativity_anonymous_map:85,get_bibtex_str:193,get_bond_length:130,get_bond_ord:130,get_bonded_structur:[0,48,69,87],get_box_shift:204,get_boxed_structur:140,get_branch:[148,232],get_brillouin_zon:133,get_capacity_grav:101,get_capacity_vol:101,get_carrier_concentr:149,get_cart_coord:202,get_cartesian_coord:133,get_cbm:148,get_cbm_vbm:153,get_celldm:213,get_center_of_arc:31,get_centered_molecul:140,get_central_sit:19,get_charg:123,get_charge_transf:123,get_chempot_correct:68,get_chempot_range_map:[78,92],get_chempot_range_map_plot:78,get_chempot_range_stability_phas:78,get_chgint_plot:117,get_children:177,get_chunk:257,get_cluster_graph:185,get_cn:69,get_cn_dict:69,get_cod_id:161,get_coeff:83,get_cohesive_energi:164,get_cohp:151,get_cohp_by_label:151,get_cohp_dict:154,get_collect:[171,184],get_complete_do:149,get_complete_ph_do:211,get_complexity_factor:149,get_compliance_expans:50,get_composition_chempot:78,get_compound_pd:78,get_computed_entri:222,get_conduct:149,get_connect:84,get_connected_sit:64,get_consistent_set:152,get_consistent_set_and_saxi:152,get_contour_pd_plot:78,get_conv_struct:122,get_conventional_standard_structur:236,get_conventional_to_primitive_transformation_matrix:236,get_conversion_factor:[47,144],get_coordinating_elements_cn:42,get_coordination_environ:23,get_coordination_numb:19,get_coordination_of_sit:64,get_coordination_symmetry_measur:21,get_coordination_symmetry_measures_optim:21,get_correct:[36,37,156],get_corrections_dict:156,get_cost_per_kg:34,get_cost_per_mol:34,get_covalent_bond:140,get_critical_composit:78,get_critical_original_kink_ratio:68,get_critical_point_for_sit:124,get_crystal_field_spin:137,get_crystal_system:236,get_csm:23,get_csm_and_map:23,get_d:141,get_data:[107,164,268],get_datafram:169,get_decomp_and_e_above_hul:78,get_decomposit:78,get_decomposition_energi:81,get_default_basis_set:188,get_default_geo:188,get_default_scf:188,get_default_unit:188,get_default_xc:188,get_defectsite_multipl:42,get_deformation_matrix:51,get_delta_etim:175,get_dens:153,get_deriv:250,get_dict_for_mongodb_queri:173,get_diff_coeff:50,get_dihedr:140,get_dimension:0,get_dimensionality_cheon:48,get_dimensionality_gorai:48,get_dimensionality_larsen:48,get_direct_band_gap:148,get_direct_band_gap_dict:148,get_displaced_structur:211,get_dist:140,get_distance_and_imag:133,get_do:150,get_doc:[164,209],get_dop:153,get_dopability_limit:41,get_dopants_from_shannon_radii:87,get_dopants_from_substitution_prob:87,get_dos_by_material_id:[164,268],get_dos_dict:[154,234],get_dos_plot:117,get_drift_corrected_structur:47,get_e_above_hul:[0,78],get_effective_csm:18,get_effective_ec:50,get_el_amount:83,get_el_amt_dict:131,get_el_sp:137,get_element_do:[153,233,234],get_element_fract:81,get_element_profil:78,get_element_spd_do:153,get_elements_between_band:222,get_elt_projected_plot:154,get_elt_projected_plots_color:154,get_energi:[53,112,115,126,131],get_energy_buckingham:126,get_energy_dens:101,get_energy_relax_structure_buckingham:126,get_energy_tersoff:126,get_entri:[0,34,164],get_entries_in_chemsi:[0,164,268],get_entry_by_material_id:164,get_environ:[5,6,108],get_environments_figur:23,get_equilibrium_reaction_energi:78,get_equiv_transform:91,get_equivalent_atom:236,get_equivalent_kpoint:148,get_equivalent_qpoint:232,get_event_handler_class:172,get_exchang:72,get_exchange_group_info:71,get_excitation_spectrum:210,get_exp_entri:164,get_exp_thermo_data:164,get_explanation_dict:156,get_extended_surface_mesh:12,get_extrapolated_conduct:47,get_extrapolated_diffus:47,get_extrem:149,get_extrema:94,get_facet:78,get_factor:91,get_fcm_oper:80,get_fermi:153,get_fermi_interextrapol:[0,153],get_ferromagnetic_structur:71,get_filepaths_and_ext:177,get_film_indic:67,get_final_structur:184,get_form_energi:78,get_form_energy_per_atom:78,get_frac_coords_from_ll:133,get_fract:131,get_fractional_coord:133,get_framework_rms_plot:[0,47],get_free_sphere_param:227,get_from_hint:21,get_gap:153,get_gb_data:164,get_geometri:19,get_geometry_from_iucr_symbol:19,get_geometry_from_iupac_symbol:19,get_geometry_from_mp_symbol:19,get_geometry_from_nam:19,get_ggt:50,get_graphviz:173,get_graphviz_dirtre:177,get_grouped_indic:142,get_gruneisen_paramet:50,get_hal:236,get_hall_carrier_concentr:149,get_hash:85,get_heat_capac:50,get_heteroatom:61,get_high_accuracy_voronoi_nod:227,get_hull_energi:[78,81],get_icohp:151,get_icohp_by_label:151,get_icohp_dict_by_bondlength:151,get_icohp_dict_of_sit:151,get_ieee_rot:142,get_implemented_geometri:19,get_info:180,get_integer_formula_and_factor:131,get_integer_index:133,get_integrated_diff:222,get_interaction_graph:72,get_interface_react:164,get_interpolated_gap:153,get_interpolated_valu:[139,151,153,233],get_ir_mesh:0,get_ir_reciprocal_mesh:236,get_ist_oper:80,get_kink:68,get_kpoint:[163,223,237],get_kpoint_degeneraci:148,get_kpoint_weight:236,get_label:92,get_lattic:193,get_lattice_quanta:58,get_lattice_typ:236,get_lattvec:150,get_lin:198,get_line_in_facet:95,get_linear_interpolated_valu:251,get_linearly_independent_vector:31,get_lll_frac_coord:133,get_lll_reduced_lattic:133,get_local_extrema:42,get_local_order_paramet:69,get_locpot_along_slab_plot:92,get_low_energy_ord:72,get_lower_and_upper_f:28,get_lowest_decomposit:34,get_magnet:115,get_magnitude_of_effect_from_speci:73,get_magnitude_of_effect_from_spin_config:73,get_magsymop:193,get_map:85,get_mass:144,get_materials_id:164,get_materials_id_from_task_id:164,get_materials_id_refer:[0,164],get_max_bond_dist:69,get_max_bond_length:84,get_max_capgrav:100,get_max_capvol:100,get_max_inst:103,get_max_muo2:103,get_mdf_robot:186,get_messag:177,get_mft_temperatur:72,get_mi_vec:12,get_miller_index_from_coord:133,get_miller_index_from_site_index:140,get_min_inst:103,get_min_muo2:103,get_minkowski_r:122,get_molecule_hash:74,get_moment:152,get_moment_relative_to_crystal_ax:152,get_mongo_info:173,get_monolay:92,get_motif_typ:42,get_mp_structur:260,get_msd_plot:47,get_mu_bound:149,get_multipl:36,get_nac_eigendisplacements_along_dir:232,get_nac_frequencies_along_dir:232,get_nam:19,get_nearest_sit:58,get_neighb_voronoi_indic:23,get_neighbor:140,get_neighbors_in_shel:140,get_neighbors_of_site_with_index:69,get_neighbors_old:140,get_newnode_id:177,get_next_index:55,get_niggli_reduced_lattic:133,get_njobs_in_queu:[173,184],get_nmr_quadrupole_mo:137,get_nn:69,get_nn_data:69,get_nn_imag:69,get_nn_info:69,get_nn_shell_info:69,get_no_mixing_energi:68,get_nod:180,get_nonmagnetic_structur:71,get_noppmodel:168,get_not_implemented_geometri:19,get_num_division_kpoint:122,get_occup:222,get_okeeffe_distance_predict:69,get_okeeffe_param:69,get_op_valu:42,get_orbital_derivative_between_st:222,get_orbital_resolved_cohp:151,get_order_paramet:69,get_ordered_with_polici:184,get_oriented_slab:67,get_ortho_ax:67,get_orthogonal_c_slab:141,get_oxi_state_decorated_structur:15,get_oxidation_state_decorated_structur:123,get_par:177,get_paramet:69,get_parchg:222,get_pars:183,get_partial_dos:150,get_pattern:[44,45,46],get_pelecs_and_pion:58,get_percentage_bond_dist_chang:84,get_percentage_lattice_parameter_chang:84,get_percentage_volume_chang:84,get_perturbed_indic:51,get_ph_bs_symm_lin:211,get_ph_bs_symm_line_from_dict:211,get_ph_do:211,get_phonon_bandstructure_by_material_id:164,get_phonon_ddb_by_material_id:164,get_phonon_dos_by_material_id:164,get_phonon_frequ:222,get_phonopy_structur:211,get_piezo:80,get_plot:[44,78,94,95,104,154,234,263],get_plot_data:104,get_pmesh:19,get_pmg_structur:211,get_point_group_oper:236,get_point_group_symbol:236,get_pointgroup:236,get_points_in_spher:133,get_points_in_sphere_old:133,get_polarization_chang:58,get_polarization_change_norm:58,get_potcar:222,get_potcar_hash:221,get_potential_shift:37,get_pourbaix_domain:81,get_pourbaix_entri:164,get_pourbaix_plot:81,get_power_factor:149,get_predicted_structur:90,get_prim_struct:122,get_primitive_standard:0,get_primitive_standard_structur:[236,237],get_primitive_structur:140,get_product:68,get_projected_plots_dot:154,get_projected_plots_dots_patom_pmorb:154,get_projection_on_el:[148,222],get_projections_on_elements_and_orbit:148,get_prototyp:13,get_pseudos_for_structur:178,get_q2:69,get_q4:69,get_q6:69,get_rand_bec:80,get_rand_fcm:80,get_rand_ist:80,get_ratio:63,get_rdf_figur:24,get_react:164,get_real_summ:37,get_reasonable_repetit:232,get_recip_summ:37,get_reconstructed_band_structur:148,get_recp_symmetry_oper:133,get_reduced_composition_and_factor:131,get_reduced_formula_and_factor:131,get_reduced_structur:140,get_refined_structur:236,get_relaxed_structur:126,get_removals_int_oxid:100,get_result:[173,177,184],get_rms_anonym:85,get_rms_dist:85,get_rmsd:74,get_rot:12,get_rotation_angle_from_sigma:[63,244],get_s2_like_s1:85,get_sadf_figur:24,get_same_branch_polarization_data:58,get_scal:142,get_scan_plot:202,get_scissors_build:184,get_script_str:175,get_sect:169,get_seebeck:149,get_seebeck_eff_mass:149,get_self_interact:37,get_set:0,get_shannon_radiu:137,get_shared_symmetry_oper:241,get_shear_reduced_slab:67,get_site_ce_fractions_and_neighbor:18,get_site_coordination_environ:18,get_site_coordination_environments_fract:18,get_site_do:[153,233],get_site_energi:55,get_site_info_for_specie_allc:23,get_site_info_for_specie_c:23,get_site_neighbor:18,get_site_orbital_do:153,get_site_spd_do:153,get_site_symmetri:241,get_site_t2g_eg_resolved_do:153,get_sitej:84,get_sites_in_spher:140,get_slab:141,get_slab_region:141,get_smeared_dens:[153,233],get_sorted_structur:[0,63,67,140,141],get_space_group_info:140,get_space_group_numb:236,get_space_group_oper:236,get_space_group_symbol:236,get_spacegroup_symbol:2,get_spd:[154,263],get_spd_do:[153,154],get_special_carbon:61,get_specific_energi:101,get_spectre_plot:202,get_stability_criteria:50,get_stabl:[0,164],get_stable_entri:[81,103],get_stable_entry_at_u:92,get_stable_fcm:80,get_stat:[180,185],get_statist:23,get_str:[143,198,204,208,221,222],get_strain_from_stress:50,get_strain_state_dict:50,get_structur:[0,21,143,164,190,193,260,268],get_structure_by_formula:161,get_structure_by_id:161,get_structure_by_material_id:[164,268],get_structure_compon:48,get_structure_from_dict:211,get_structure_from_mp:[0,2,6],get_structure_from_prev_run:223,get_structure_property_dict:50,get_structure_with_charg:209,get_structure_with_nod:42,get_structure_with_only_magnetic_atom:71,get_structure_with_spin:71,get_sub_electrod:[102,103],get_subgraphs_as_molecul:64,get_subset_in_chemsi:158,get_substr:164,get_suggested_saxi:152,get_summary_dict:[47,67,82,102],get_summed_cohp_by_label_and_orbital_list:151,get_summed_cohp_by_label_list:151,get_summed_icohp_by_label_list:151,get_supercell_matrix:85,get_surface_data:164,get_surface_equilibrium:92,get_surface_sit:141,get_sym_eq_kpoint:148,get_symbol_cn_map:19,get_symbol_dict:142,get_symbol_list:50,get_symbol_name_map:19,get_symm_band:149,get_symmetric_sit:141,get_symmetric_wallace_tensor:50,get_symmetrically_distinct_miller_indic:141,get_symmetrically_equivalent_miller_indic:141,get_symmetrized_fcm:80,get_symmetrized_structur:[236,242],get_symmetry_dataset:236,get_symmetry_oper:[0,236],get_symop:193,get_task_data:164,get_task_scfcycl:173,get_tasker2_slab:141,get_tgt:50,get_thermal_conduct:149,get_tick:[154,234],get_total_ionic_dipol:58,get_trans_mat:63,get_transform:85,get_transition_chempot:78,get_tri_area:95,get_typ:69,get_unique_famili:44,get_unit_primitive_area:92,get_unreconstructed_slab:141,get_unstable_entri:103,get_unstable_fcm:80,get_uvec:142,get_v:77,get_val:15,get_valid_path:106,get_valu:169,get_vars_datafram:177,get_vasp_input:[0,9,223],get_vasp_kpoint_file_sym:122,get_vasprun_outcar:223,get_vbm:148,get_vector_along_lattice_direct:[0,133],get_void_volume_surfarea:227,get_voigt_dict:142,get_volum:150,get_voronoi_nod:227,get_voronoi_polyhedra:69,get_wallace_tensor:50,get_weight:250,get_weights_of_nn_sit:69,get_wigner_seitz_cel:133,get_wt_fract:131,get_wulff_shap:164,get_xas_data:164,get_xrd_plot:[0,117],get_xyz_magmom_with_001_saxi:152,get_yield_stress:50,get_z_ordered_elmap:15,get_zmatrix:202,get_zt:149,getmessag:177,getmu_vertices_stability_phas:78,getsiz:185,gfactor:219,gflop:169,gfortran:[3,116],gfortranbinari:3,gga:[0,2,15,21,37,41,77,134,145,156,164,221,222,223,247,266],gga_c_am05:[134,145],gga_c_apb:134,gga_c_bgcp:134,gga_c_ft97:134,gga_c_gam:134,gga_c_hcth_a:134,gga_c_lm:134,gga_c_lyp:[134,145],gga_c_n12:134,gga_c_n12_sx:134,gga_c_op_b88:134,gga_c_op_g96:134,gga_c_op_pb:134,gga_c_op_pw91:134,gga_c_op_xalpha:134,gga_c_optc:134,gga_c_p86:134,gga_c_pb:[134,145],gga_c_pbe_jrgx:134,gga_c_pbe_sol:[134,145],gga_c_pbef:134,gga_c_pbeint:134,gga_c_pbeloc:134,gga_c_pw91:[134,145],gga_c_q2d:134,gga_c_regtpss:134,gga_c_revtca:134,gga_c_rge2:134,gga_c_sogga11:134,gga_c_sogga11_x:134,gga_c_spb:134,gga_c_tca:134,gga_c_wi0:134,gga_c_wi:134,gga_c_wl:134,gga_c_xpb:134,gga_c_zpbeint:134,gga_c_zpbesol:134,gga_k_absp1:134,gga_k_absp2:134,gga_k_apb:134,gga_k_apbeint:134,gga_k_baltin:134,gga_k_dk:134,gga_k_ernzerhof:134,gga_k_fr_b88:134,gga_k_fr_pw86:134,gga_k_ge2:134,gga_k_golden:134,gga_k_gp85:134,gga_k_gr:134,gga_k_lc94:134,gga_k_lieb:134,gga_k_llp:134,gga_k_ludena:134,gga_k_mey:134,gga_k_ol1:134,gga_k_ol2:134,gga_k_pearson:134,gga_k_perdew:134,gga_k_revapb:134,gga_k_revapbeint:134,gga_k_tfvw:134,gga_k_thakkar:134,gga_k_tw1:134,gga_k_tw2:134,gga_k_tw3:134,gga_k_tw4:134,gga_k_vjk:134,gga_k_vsk:134,gga_k_vw:134,gga_k_yt65:134,gga_relax:21,gga_x_2d_b86:134,gga_x_2d_b86_mgc:134,gga_x_2d_b88:134,gga_x_2d_pb:134,gga_x_airi:134,gga_x_ak13:134,gga_x_am05:[134,145],gga_x_apb:134,gga_x_b86:134,gga_x_b86_mgc:134,gga_x_b86_r:134,gga_x_b88:[134,145],gga_x_bayesian:134,gga_x_bgcp:134,gga_x_bpccac:134,gga_x_c09x:134,gga_x_cap:134,gga_x_dk87_r1:134,gga_x_dk87_r2:134,gga_x_ev93:134,gga_x_ft97_a:134,gga_x_ft97_b:134,gga_x_g96:134,gga_x_gam:134,gga_x_hcth_a:134,gga_x_herman:134,gga_x_hjs_b88:134,gga_x_hjs_b88_v2:134,gga_x_hjs_b97x:134,gga_x_hjs_pb:134,gga_x_hjs_pbe_sol:134,gga_x_htb:134,gga_x_ityh:134,gga_x_kt1:134,gga_x_lag:134,gga_x_lambda_ch_n:134,gga_x_lambda_lo_n:134,gga_x_lambda_oc2_n:134,gga_x_lb:134,gga_x_lbm:134,gga_x_lg93:134,gga_x_lv_rpw86:134,gga_x_mb88:134,gga_x_mpb:134,gga_x_mpw91:134,gga_x_n12:134,gga_x_ol2:134,gga_x_optb88_vdw:134,gga_x_optpbe_vdw:134,gga_x_optx:134,gga_x_pb:[134,145],gga_x_pbe_jsjr:134,gga_x_pbe_mol:134,gga_x_pbe_r:[134,145],gga_x_pbe_sol:[134,145],gga_x_pbe_tca:134,gga_x_pbea:134,gga_x_pbef:134,gga_x_pbeint:134,gga_x_pbek1_vdw:134,gga_x_pw86:134,gga_x_pw91:[134,145],gga_x_q2d:134,gga_x_rge2:134,gga_x_rpb:[134,145],gga_x_rpw86:134,gga_x_sfat:134,gga_x_sogga11:134,gga_x_sogga:134,gga_x_ssb:134,gga_x_ssb_d:134,gga_x_ssb_sw:134,gga_x_vmt84_g:134,gga_x_vmt84_pb:134,gga_x_vmt_g:134,gga_x_vmt_pb:134,gga_x_wc:134,gga_x_wpbeh:134,gga_x_xpb:134,gga_xc_b97_d:134,gga_xc_b97_gga1:134,gga_xc_edf1:134,gga_xc_hcth_120:134,gga_xc_hcth_147:134,gga_xc_hcth_407:134,gga_xc_hcth_407p:134,gga_xc_hcth_93:134,gga_xc_hcth_p14:134,gga_xc_hcth_p76:134,gga_xc_kt2:134,gga_xc_mohlyp2:134,gga_xc_mohlyp:134,gga_xc_mpwlyp1w:134,gga_xc_oblyp_d:134,gga_xc_opbe_d:134,gga_xc_opwlyp_d:134,gga_xc_pbe1w:134,gga_xc_pbelyp1w:134,gga_xc_th1:134,gga_xc_th2:134,gga_xc_th3:134,gga_xc_th4:134,gga_xc_th_fc:134,gga_xc_th_fcfo:134,gga_xc_th_fco:134,gga_xc_th_fl:134,gga_xc_vv10:134,gga_xc_xlyp:134,ggk:187,ggt:50,ghemic:192,ghost_sit:141,gian:21,giantomassi:[0,267],gibb:[0,78,81,82,92,149,154,202],gibbs_binding_energi:92,gin:126,git:[0,1,3],github:[0,2,4,95,124,162,164,180,232],gitlab:150,give:[0,2,13,28,34,36,41,55,58,63,64,69,71,73,77,78,85,90,91,92,100,122,124,126,131,149,150,152,153,154,164,172,173,185,208,209,222,236,244,251,252,268],give_only_index:236,given:[0,1,2,3,8,12,13,14,15,18,19,21,23,24,28,31,34,36,37,38,41,42,45,46,47,48,50,53,55,58,60,63,64,67,68,69,71,73,77,78,81,82,83,84,85,87,88,89,90,91,92,94,95,100,101,103,122,123,124,130,131,133,136,137,138,140,141,142,143,148,149,150,151,152,153,154,156,158,162,164,168,169,170,171,172,173,178,181,184,185,186,188,198,202,205,209,217,221,222,223,227,229,230,232,234,236,237,240,244,246,247,251,254,258,259,263,266,268],gjf:[2,140,268],gkk:[184,187],gkk_file:187,gkk_filepath:184,gkk_node:184,gkkpwork:186,glaum:21,global:[0,2,152,192,244],global_mo:152,gmail:[164,256],gmatteo:[0,54],gmolecul:188,gnu:3,gnuplot:[39,250],goal:[141,180],godbi:[168,170],goe:[46,198,200,253],goebel:21,going:[2,3,19,89,140,164,268],golden:[54,255],gonz:[21,149],good:[3,47,60,64,77,85,89,136,141,169,223,268],good_sect:169,googl:2,googlecod:176,gorai:48,gout:126,gov:[3,137,227],govern:184,gowoon:48,gpa:[54,82],gpa_to_ev_a3:50,gpaw:145,gpoint:222,gpretto:0,grab:[0,2],grad:124,gradep:124,gradient:[51,52,76,77,124,168,188,192,210,222,223,247],gradual:13,graef:[45,46,238],grain:[0,5,6,11,62,164,223,244,268],grain_label:63,grainboundari:63,grainboundarygener:63,grainboundarytransform:[0,244],gramschmidt:69,grand:[0,68,78,92,266],grandpotentialphasediagram:[0,68,78],grandpotpdentri:78,grant:2,granular:47,graph:[0,3,5,6,11,47,48,60,61,69,72,87,124,128,154,162,173,177,185,234],graph_attr:[173,185],graph_data:64,graph_dict:64,graphic:[2,78,154],graphit:260,graphviz:[3,64,173,177,185],graphviz_imshow:173,grav:100,gravimetr:101,grazuli:161,great:95,greater:[0,2,38,69,107,131,140,164,175,185,233],greatest:[31,131],greatli:[2,158],greedi:153,green:[50,51,64,154,168,259],green_kristoffel:50,green_lagrange_strain:51,grei:[255,265],grep:[0,213,218,222,223],grid:[0,18,23,37,42,44,54,77,124,149,153,154,167,168,169,173,178,185,201,209,213,219,221,222,223,234,236],grid_off:95,gridf:177,gridfs_fil:177,gridfsfil:177,gridspec_kw:255,grip:2,gross:133,grosspop:[0,209],ground:[0,68,72,91,128,137,158,164,167,184,186,187],ground_state_energi:91,ground_state_term_symbol:137,groundstatescfcycl:167,group:[0,2,3,5,6,10,13,19,21,28,36,42,47,48,58,61,64,71,74,85,94,124,131,133,137,140,141,142,158,164,169,173,176,193,198,204,208,218,222,223,235,236,239,240,241,247,266,268],group_array_indic:142,group_by_typ:140,group_entries_by_structur:158,group_molecul:74,group_structur:[0,85],groupby_statu:173,groupby_task_class:173,grow:2,growth:91,gruneisen:[50,82],gruneisen_paramet:82,gsr:[177,184,186],gstask:184,gswfk_file:187,guarante:[0,2,56,64,71,97,139,141,219,236,246,247,268],guard:164,guess:[0,3,47,58,60,71,90,131,140,204,247,250,268],guess_el:204,guesstim:73,guesstimate_spin:73,gui:173,guid:[0,3,58,268],guidanc:164,guidelin:[0,2,3],guido:[0,185],gulp:[0,3,53,55,126,225,227],gulp_cal:[0,3,5,6,121],gulp_cmd:126,gulpcal:126,gulpconvergenceerror:126,gulperror:126,gulpio:126,gunter:[2,266,267],gvallver:154,gvallverdu:0,gw_fiesta:201,gw_option:201,gw_qprang:168,gwcalctyp:168,gweight:18,gwpara:168,gzip:[0,107,123,124,193],h2o2:131,h2o:[81,156],h_gw:223,h_node:256,habit:184,had:[0,36,55,149],haeberlen:76,haeberlen_valu:76,haeberlennot:76,hafner:39,half:[0,85,141,202],halfspac:41,halfspaceinterect:41,halfspaceintersect:81,halit:141,halite_111_octopolar_2x2:141,hall:[149,150,154,161,236],hall_carrier_conc_trac:150,hall_carrier_conc_trace_mu:150,hall_dop:149,hallten:149,halogen:[131,137],halogen_list:75,hamilton:[0,151,154],hamiltonian:[71,72,168],hammer:145,hand:[3,106],handi:167,handl:[0,1,2,48,92,150,151,152,172,175,191,205,209,215,236],handle_input_ev:172,handle_task_ev:172,handler:[172,177,180,182],hangup:180,hanmei:0,hanmeitang:0,hansen:145,hanson:13,happen:[36,42,69],haranczyk:[40,42,266],hard:[73,137,173,204,246,247],hardwar:[180,183],harmon:82,harri:76,hart:[0,3,13,246],hartre:[167,168,178,186,210,222],hartree_paramet:174,has:[0,1,2,3,9,21,23,24,38,41,47,50,54,55,58,60,63,67,69,71,78,80,81,83,92,101,106,124,133,136,137,140,141,142,145,149,150,152,154,164,172,173,175,177,178,180,184,186,188,198,202,205,210,212,221,222,223,230,232,236,244,258,268],has_abiext:185,has_antibnd_states_below_efermi:151,has_chroot:173,has_db:[173,184],has_dojo_report:178,has_eigendisplac:232,has_error:193,has_good_quality_check_occupied_band:209,has_good_quality_maxdevi:209,has_hint:178,has_imaginary_freq:232,has_intersect:18,has_materials_project_access:26,has_mpi:184,has_mpiio:184,has_nac:[211,232],has_netcdf:184,has_node_failur:180,has_omp:184,has_opt:188,has_queu:184,has_schedul:173,has_subkei:188,hash:[0,74,85,137,142,156,178,221,222,223],hashabl:[74,85,131,138,140,145,177],hasn:221,hautier:[0,2,21,78,88,89,149,223,266,267],have:[0,1,2,3,8,12,14,15,21,23,36,38,41,47,48,51,53,55,58,59,60,61,63,64,67,69,71,73,75,77,78,84,85,87,91,92,94,95,100,101,102,103,106,107,121,122,126,131,135,137,138,140,141,142,143,144,148,149,152,153,154,156,157,164,167,169,173,176,177,178,180,183,184,185,186,188,192,204,209,211,219,221,222,223,227,234,236,242,244,245,246,247,248,251,253,259,260,266,268],have_consistent_saxi:152,have_equivalent_surfac:141,haven:[0,55,173],haydock:168,hbar:[42,50],hcp:[69,95,247],hdf5:[0,222],he_bcc:260,he_gw:223,head:207,headach:223,header:[0,3,163,176,193,198,199,200,208,212,218,222,225,259],header_pattern:[218,222],header_str:198,header_string_from_fil:198,heat:[50,233,234,255],heatmap:255,heavi:[0,164,268],heavier:157,heavili:268,hedin:221,height:[12,54,69,104,154,244,255],heisenberg:[0,5,6,11,64,70],heisenbergmapp:[72,128],heisenbergscreen:72,hello:171,helmholtz:[82,233],helmholtz_free_energi:233,helmoltz:234,help:[0,2,12,19,38,58,63,64,71,78,92,133,141,153,154,164,209,265],helper:[0,5,6,10,12,28,42,50,64,69,84,92,95,107,122,127,131,141,142,164,165,166,171,184,185,196,198,213,221,255],hematit:93,henc:[179,184,221,247,253],henchforth:0,heng:0,henkelman:[94,123,222,266],henkelmann:[0,3,123,266],henriquemiranda:232,here:[1,2,3,48,69,71,85,92,141,145,173,178,184,185,211,219,222,253,258,268],herebi:2,herfindahl:66,hermann:238,hessian:[0,124,154,202,210],heteroatom:61,heterostructur:[48,59,91],heurist:[71,73],hex:[0,63,177,237],hex_angle_tol:133,hex_bipyr:69,hex_length_tol:133,hex_pyr:69,hex_triplet:177,hexagon:[0,63,69,95,133,141,168,221,223,236,237,238,240,244],hf_pv:223,hf_sv_gw:223,hfscreen:223,hg_sv_gw:223,hhi:[0,5,6,11],hick:13,hide:64,hide_image_edg:64,hide_unconnected_nod:64,hierarchi:268,high:[0,2,10,42,71,73,92,137,149,150,162,170,178,192,210,223,227,236,237,265,266],highcharg:39,highchart:39,higher:[41,42,50,53,69,89,92,149,154,222,223,247],highest:[12,42,48,50,78,84,101,135,149,184,246,268],highest_protocol:260,highli:[0,1,2,3,168,221,222,246,268],highlight:268,highsymmkpath:[150,154,221,237],hight:221,hilber:168,hilbert:168,hilberttransform:168,hill:[50,131],hill_formula:131,hillari:0,hint:[0,19,21,23,71,178,184],hint_for_accuraci:178,hints_info:19,hints_typ:19,hirerachi:268,hirschman:66,hirshfeld:223,his:238,hist:[167,184,186],histfil:186,histo:149,histogram:[149,169,185],histori:[9,10,164,167,173,177,186,246,247,248,256],historynod:256,historyrecord:177,hit:250,hive:[5,6,98,105,107,268],hkil:[95,141],hkill:95,hkl:[44,46,48,95,133,141],hkl_list:95,hkl_transform:141,hkl_tuple_to_str:95,ho3:223,ho_3:223,hold:[63,141,227],holder:2,hole:[37,38,41,149,153],hollow:12,home:[2,185],homebrew:124,homo:135,homogen:50,homogeneous_poisson:50,hook:[0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221,222,223],incar_input:209,incar_output:209,incar_paramet:0,inch:[54,154,255],inchi:74,inchimolatommapp:74,incid:200,includ:[0,1,2,3,9,10,12,21,23,34,36,37,38,42,46,47,48,50,51,55,58,60,63,64,67,68,69,78,81,89,91,92,99,103,106,131,133,136,138,139,140,141,142,143,144,149,151,153,157,158,159,163,164,168,170,173,175,177,185,188,200,204,209,222,223,242,244,267,268],include_base_prop:50,include_bv_charg:40,include_central_site_in_centroid:21,include_cif:[10,223],include_deactiv:19,include_dist:85,include_gamma:163,include_ignored_speci:85,include_imag:140,include_improp:142,include_index:140,include_mscd_t:47,include_msd_t:47,include_myself:103,include_no_mixing_energi:68,include_reconstruct:141,include_strain:91,include_unprocessed_entri:81,include_user_ag:164,include_work_of_separ:164,inclus:131,inclusionari:244,inclvkb:[168,170],incompat:[0,3,41,156,193],incomplet:[21,206],inconsist:[47,142,152,173],incorpor:[64,164,222],incorport:135,incorrect:0,incorrectli:0,incr:92,increas:[0,2,23,28,42,55,63,84,90,131,140,164,172,183,184,221,223,244,254,265],increase_cpu:183,increase_mem:[183,184],increase_ncpu:184,increase_resourc:184,increase_tim:[183,184],incred:141,increment:[92,149,222],incres:183,ind1:140,ind2:140,ind:[133,222],ind_zero_freq:233,indata:186,inde:[173,180,185],indent:196,indentifi:182,independ:[0,50,51,78,91,92,148,150,168,173,188,202,210],index1:84,index2:84,index:[0,1,2,12,21,23,28,37,38,39,42,48,50,51,55,58,59,60,63,64,66,68,69,74,75,80,84,91,92,95,123,124,128,133,137,138,140,141,142,143,148,149,152,154,164,168,176,185,186,188,192,198,199,200,201,202,204,207,213,222,223,232,233,241,244,251,252,254,265,268],index_non:63,index_of_sit:141,indexerror:[9,10],indic:[0,9,10,12,19,21,24,28,37,42,44,48,50,51,55,61,63,64,67,69,74,77,84,85,91,92,95,124,130,131,133,136,138,140,141,142,148,149,151,152,153,154,168,173,198,202,204,209,221,222,223,232,236,244,246,248,251,252,254,256,263],indices_from_symbol:140,indices_left:55,indices_neigh:69,indices_separ:28,indices_species_map:246,indices_to_mov:246,indices_to_remov:246,indici:91,individidu:178,individu:[2,47,81,92,94,151,154,222],induc:64,inequival:[71,211],inertia:236,inext:185,inf:[23,150,168,186,244],infer:204,infin:[0,18,92],infinit:[24,69,74,133,149,175,268],infit:[40,42],influenc:[55,149],info:[0,2,21,23,69,82,124,164,169,172,173,177,180,184,199,201,204,209,222,223,227,265],info_dict:[23,134],inform:[0,2,3,14,18,21,23,28,36,38,42,44,47,48,63,64,67,68,69,71,83,84,85,124,126,128,132,135,140,141,142,143,144,145,148,149,151,152,155,157,164,167,173,177,184,192,193,198,209,222,223,225,226,227,232,244,246,247,248,266,268],inforn:177,infos_on_basis_set:201,infos_on_system:201,infrastructur:[223,266],inher:[141,244],inherit:[50,58,177,223,246,247],init:[0,42,63,69,91,131,134,141,172,173,222,223],init_3point:28,init_cel:63,init_count:177,init_inplane_shift:67,init_neighbors_set:23,init_slab:141,initi:[0,3,9,10,14,15,19,21,23,24,28,36,37,38,40,42,45,46,47,50,53,54,55,60,63,67,69,71,75,78,81,84,90,91,92,94,100,102,123,126,130,131,136,137,140,141,142,144,151,152,153,154,157,164,167,173,175,177,179,180,184,185,186,188,192,201,209,213,221,223,224,234,236,240,247,251,263,268],initial_angle_tol:13,initial_comp:102,initial_defect_structur:[37,38],initial_disp:47,initial_entri:14,initial_fit:142,initial_ltol:13,initial_molecul:14,initial_norm:23,initial_r:23,initial_stol:13,initial_structur:[47,63,84,141],initial_structure_environ:21,initialis:69,initialization_opt:18,initializationchemenverror:27,initio:[149,154,175],inner:[133,140],innov:266,inorgan:[88,89,131,137,223,255],inp:[140,184,186,198,199,200,207,268],inpfil:188,input:[0,2,3,5,6,9,10,12,13,19,36,42,44,45,46,47,48,50,54,55,58,61,63,64,67,69,71,72,73,76,78,81,84,85,88,89,90,95,103,106,109,126,127,128,131,133,135,137,140,141,142,143,148,149,150,151,154,156,157,158,159,164,165,168,172,173,174,175,177,178,180,184,185,186,188,191,192,193,194,195,197,199,200,201,202,203,204,206,207,208,209,210,212,213,214,217,218,219,220,222,223,225,226,227,236,237,242,244,246,247,248,251,254,259,260,268],input_arrai:[50,142],input_dir:[200,221],input_fil:[173,184,207,217],input_filenam:[2,207],input_grid:209,input_matrix:[50,79,80],input_mil:95,input_paramet:202,input_set:156,input_str:[140,224],input_vasp_arrai:79,inputset:156,inscrib:244,insensit:177,insert:[0,42,63,64,100,101,103,140,164,173,185,209,244,246,268],insert_nod:64,insertion_batteri:[5,6,98,99],insertionelectrod:[99,103],insertionvoltagepair:103,insertsitestransform:246,insid:[12,149,154,167,173,184,187,193,201,244],inspect:[167,173,184,185,205,244],inspir:[122,145,156],instabl:[78,103],instal:[0,1,5,6,69,124,126,140,165,177,204,246,268],install_event_handl:177,install_softwar:116,installzeo:3,instanc:[0,8,9,19,34,61,64,69,76,78,81,89,90,133,137,138,140,144,145,149,154,168,170,173,176,177,178,180,184,186,192,204,205,221,223,234,236,247,256,258,260,268],instanci:[168,176],instanti:[37,61,140,154,167,168,173,178,186,190,219],instead:[0,1,2,3,8,45,47,48,54,60,68,69,71,78,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module","pymatgen.io.zeopp module","pymatgen.optimization package","pymatgen.optimization.linear_assignment module","pymatgen.optimization.linear_assignment_numpy module","pymatgen.phonon package","pymatgen.phonon.bandstructure module","pymatgen.phonon.dos module","pymatgen.phonon.plotter module","pymatgen.symmetry package","pymatgen.symmetry.analyzer module","pymatgen.symmetry.bandstructure module","pymatgen.symmetry.groups module","pymatgen.symmetry.maggroups module","pymatgen.symmetry.settings module","pymatgen.symmetry.site_symmetries module","pymatgen.symmetry.structure module","pymatgen.transformations package","pymatgen.transformations.advanced_transformations module","pymatgen.transformations.defect_transformations module","pymatgen.transformations.site_transformations module","pymatgen.transformations.standard_transformations module","pymatgen.transformations.transformation_abc module","pymatgen.util package","pymatgen.util.convergence module","pymatgen.util.coord module","pymatgen.util.coord_cython module","pymatgen.util.io_utils module","pymatgen.util.num module","pymatgen.util.plotting module","pymatgen.util.provenance module","pymatgen.util.sequence module","pymatgen.util.serialization module","pymatgen.util.string module","pymatgen.util.testing module","pymatgen.util.typing module","pymatgen.vis package","pymatgen.vis.plotters module","pymatgen.vis.structure_chemview module","pymatgen.vis.structure_vtk module","References","Active Core Team","Overview"],titleterms:{"new":2,The:268,abiinspect:167,abinit:[166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187],abiobject:168,abitim:169,about:2,aconvasp_cal:122,activ:267,add:2,adf:188,adsorpt:12,advanced_transform:244,aflow_prototyp:13,aiida:189,alchemi:[7,8,9,10,268],alumni:267,analysi:[11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,266,268],analyz:[71,100,236],anoth:268,api:[2,268],app:[98,99,100,101,102,103,104,105,106,107],as_dict:268,ase:190,assimil:268,atat:191,babel:192,bader:3,bader_cal:[123,266],bandstructur:[148,232,237],base:3,basic:268,batteri:[99,100,101,102,103,104],battery_abc:101,boltztrap2:150,boltztrap:149,bond:130,bond_dissoci:14,bond_val:15,borg:[105,106,107,268],calcul:[170,268],can:268,chang:[0,2,4],check:227,chemenv:[16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],chemenv_config:26,chemenv_error:27,chemenv_strategi:18,cif:193,cite:2,cli:[108,109,110,111,112,113,114,115,116,117,118,119,120],cluster:2,cod:161,code:1,cohp:151,collabor:1,command:2,command_lin:[121,122,123,124,125,126,127,128,266],compat:[1,156,266,268],composit:131,computed_entri:157,conda:[2,3],config:268,content:[6,7,11,16,17,20,22,25,33,35,43,49,57,62,65,70,86,96,98,99,105,108,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],contribut:2,contributor:267,converg:250,conversion_batteri:102,coord:251,coord_cython:252,coordination_environ:[17,18,19,20,21,22,23,24],coordination_geometri:19,coordination_geometries_fil:20,coordination_geometry_find:21,coordination_geometry_util:28,copyright:2,core:[36,44,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,152,266,267],correct:37,cost:[33,34],creat:[3,268],critic2_cal:124,crystalsai:162,cssr:194,dao:146,data:[204,268],decod:268,defect:[35,36,37,38,39,40,41,42],defect_compat:38,defect_transform:245,defs_util:29,depend:3,develop:[2,3],development:3,diagram:268,diffract:[43,44,45,46],diffusion_analyz:47,dilute_solution_model:39,dimension:48,doc:2,document:2,dopant_predictor:87,dos:[153,233],effect:2,elast:[49,50,51,52],electronic_structur:[147,148,149,150,151,152,153,154],energi:268,energy_model:53,entri:[155,156,157,158,159,266,268],entry_tool:158,enumlib:3,enumlib_cal:125,environ:3,eos:54,event:172,ewald:55,exampl:[2,268],excit:[56,195,196],exp_entri:159,ext:[160,161,162,163,164],extern:267,feff:[197,198,199,200,266],feff_input_gener:109,feff_plot_cross_sect:110,feff_plot_do:111,ferroelectr:[57,58],fiesta:201,file:268,filter:8,find_dimens:59,flow:173,fragment:60,from:2,from_dict:268,func_util:30,functional_group:61,gaussian:202,gaussian_analyz:112,gener:40,get:2,get_environ:113,gga:268,github:[1,3],grain:63,graph:64,group:238,guidelin:1,gulp_cal:126,heisenberg:72,helper:174,hhi:[65,66],high:268,hive:106,how:2,indic:2,input:[196,198,205,215,221],insertion_batteri:103,instal:[2,3,227],integr:268,interfac:67,interface_react:68,introduct:2,io_util:253,ion:132,jahntel:73,jhu:163,lammp:[203,204,205,206,207],lattic:133,launcher:175,librari:3,libxcfunc:134,licens:2,line:2,linear_assign:229,linear_assignment_numpi:230,linux:3,lmto:208,lobster:209,local_env:69,log:[0,2,4],mac:3,maggroup:239,magnet:[70,71,72,73],make:268,manual:268,materi:[9,268],matgeni:2,math_util:31,matproj:[164,266,268],mcsqs_caller:127,method:268,mix:268,mode:3,modifi:268,modul:[6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265],molecul:268,molecular_orbit:135,molecule_match:74,molecule_structure_compar:75,montyencod:268,more:2,netcdf:176,neutron:45,nmr:76,node:177,non:3,note:268,num:254,nwchem:210,offlin:2,onli:[2,3],ons:2,openbabel:3,oper:136,optim:[228,229,230],option:3,osx:3,output:[199,206,216,222],overview:268,packag:[6,7,11,16,17,20,22,25,33,35,43,49,57,62,65,70,86,96,98,99,105,108,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],path_find:[77,266],periodic_t:137,phase:268,phase_diagram:78,phasediagram:266,phonon:[231,232,233,234],phonopi:211,piezo:79,piezo_sensit:80,pip:2,plot:255,plotter:[104,154,234,263],pmg:[2,114],pmg_analyz:115,pmg_config:116,pmg_mapi_kei:268,pmg_plot:117,pmg_potcar:118,pmg_queri:119,pmg_structur:120,polar:58,polici:2,post:227,potcar:3,pourbaix_diagram:81,prepar:3,prismat:212,program:3,project:268,proven:256,pseudo:178,pwscf:213,py3k:2,pymatgen:[2,3,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,268],python:[1,3],qadapt:179,qchem:[214,215,216,217,218],qjob:180,quasiharmon:82,queen:107,queri:268,quick:2,qutil:181,reaction:268,reaction_calcul:83,read:268,recommend:2,refer:266,requir:3,resourc:2,rest:268,run:268,scheduler_error_handl:182,scheduler_error_pars:183,scripts_util:32,sequenc:257,serial:258,set:[200,217,223,240,266,268],setup:3,share:2,shengbt:219,side:268,simpl:268,site:138,site_symmetri:241,site_transform:246,spectrum:[97,139],standard_transform:247,start:2,step:[3,227],strain:51,strategy_fil:22,stress:52,string:259,structur:[140,242,268],structure_analyz:84,structure_chemview:264,structure_environ:23,structure_match:85,structure_predict:[86,87,88,89,90],structure_vtk:265,submodul:[6,7,11,17,25,33,35,43,49,57,62,65,70,86,96,99,105,108,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],subpackag:[6,7,11,16,17,25,33,35,43,65,86,96,98,99,105,121,129,147,155,160,165,166,195,197,203,214,220,228,231,235,243,249,262],substitution_prob:88,substitutor:89,substrate_analyz:91,surfac:[141,266],surface_analysi:92,symmetri:[235,236,237,238,239,240,241,242,266],system:3,tabl:2,task:184,team:[2,267],tensor:142,test:[3,260],thermochemistri:93,thermodynam:41,thing:268,throughput:268,tip:3,tool:2,trajectori:143,transform:[243,244,245,246,247,248,268],transformation_abc:248,transition_st:94,transmut:10,type:261,unit:[144,268],usag:2,use:2,using:3,util:[25,26,27,28,29,30,31,32,42,185,207,218,249,250,251,252,253,254,255,256,257,258,259,260,261],v2017:0,v2018:0,v2019:[0,4],vampire_cal:128,vasp:[220,221,222,223,266],via:2,vis:[262,263,264,265],volume_predictor:90,voronoi:24,vtk:3,why:2,window:3,word:1,work:186,workflow:1,wrapper:187,write:268,wulff:[95,266],xas:[96,97],xcfunc:145,xcrysden:224,xrd:46,xyz:226,you:268,your:3,zeo:[3,227,266],zeopp:227}})
\ No newline at end of file
diff --git a/docs/team.html b/docs/team.html
index 069c220a032..796f270ea02 100644
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@@ -13,7 +13,6 @@
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@@ -13,7 +13,6 @@
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