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Commits on Mar 4, 2016

  1. fix issue with `proLik()` CI limits 

      - use `LRTest()` inside `constrainFun()` to calculate lambda
  - ensures consistency of sign
  - profile likelihoods are valleys (not hills)
  - still assume model log-likelihoods are negative
    @matthewwolak
    matthewwolak committed Mar 4, 2016
    978ad61

  2. create help page LRTest.Rd

    @matthewwolak
    matthewwolak committed Mar 4, 2016
    d34b96e

  3. update NAMESPACE export

    @matthewwolak
    matthewwolak committed Mar 4, 2016
    d0d040a

Commits on Mar 2, 2016

  1. Edit proLik.Rd to include '\' where missing

    @matthewwolak
    matthewwolak committed Mar 2, 2016
    13d91f9

Commits on Feb 6, 2016

  1. Bump up version and date in nadiv-package.Rd

    @matthewwolak
    matthewwolak committed Feb 6, 2016
    6c591e7

  2. Update version and date in DESCRIPTION

    @matthewwolak
    matthewwolak committed Feb 6, 2016
    4a1a457

  3. Update NEWS.md for release of 2.14.2

    @matthewwolak
    matthewwolak committed Feb 6, 2016
    4eac7e9

Commits on Feb 5, 2016

  1. Remove NEWS.md from .Rbuildignore 

     - `devtools::release()` said `NEWS.md` now supported by CRAN
    @matthewwolak
    matthewwolak committed Feb 5, 2016
    fede82f

  2. Update NEWS.md for f coeff order 

     - previous fix of f coefficient order in `makeAinv()` didn't resolve problem
    @matthewwolak
    matthewwolak committed Feb 5, 2016
    1d02ab9

  3. update cran-comments.md to submit 2.14.2 to CRAN

    @matthewwolak
    matthewwolak committed Feb 5, 2016
    6be87cb

  4. update .Rd to explain use of f in D matrix

    @matthewwolak
    matthewwolak committed Feb 5, 2016
    6efb8bc

Commits on Feb 4, 2016

  1. Merge pull request #9 from matthewwolak/cleanCPPheader 

    Clean cpp header files
    @matthewwolak
    matthewwolak committed Feb 4, 2016
    dbfca3c

  2. update pakage date in .Rd and DESCRIPTION

    @matthewwolak
    matthewwolak committed Feb 4, 2016
    12520b6

  3. update my .cc files to include nadivcc.h header 

     - point to this one instead of individual header files
    @matthewwolak
    matthewwolak committed Feb 4, 2016
    f82b6fc

  4. update header files '.h' 

     - delete test.h and General.h completely
 - replace these with nadiv.h and nadivcc.h for c (.c) and c++ (.cc), respectively
 - edit cs.h to conform to R CRAN requirements (see e-mail from Ripley end of Jan 2016)
    @matthewwolak
    matthewwolak committed Feb 4, 2016
    15f8638

Commits on Jan 21, 2016

  1. fix order of f coeffs in makeAinv.R 

    Previous fixes still didn't give the correct order
    @matthewwolak
    matthewwolak committed Jan 21, 2016
    134ae74

Commits on Nov 18, 2015

  1. Merge pull request #8 from matthewwolak/fuzzy-ggcontrib 

    merge branch implementing fuzzy classification in `ggcontrib()`
    @matthewwolak
    matthewwolak committed Nov 18, 2015
    4bff0fa

  2. tweak example ggcontrib.Rd print gg1

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    a03b898

  3. update NEWS.md for fuzzy classification ggcontrib.R/Rd

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    39aec4d

  4. change examples in ggcontrib.Rd to use Q1988 data

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    50ccf81

  5. cleanup ggcontrib.Rd examples

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    e65b8eb

  6. add fuzzy documentation to ggcontrib.Rd

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    b5d6d82

  7. init commit fuzzy classification ggcontrib.R

    @matthewwolak
    matthewwolak committed Nov 18, 2015
    c1bcad0

Commits on Nov 9, 2015

  1. add gene dropping c++ from dsim.c

    @matthewwolak
    matthewwolak committed Nov 9, 2015
    8f08644

Commits on Oct 12, 2015

  1. LRTest.R typo fix

    @matthewwolak
    matthewwolak committed Oct 12, 2015
    2018c72

  2. LRTest.R only accepts negative likelihood

    @matthewwolak
    matthewwolak committed Oct 12, 2015
    3aa34d3

Commits on Aug 20, 2015

  1. actually fix subset f in makeAinv.R

    @matthewwolak
    matthewwolak committed Aug 20, 2015
    e4cabff

  2. update version & date

    @matthewwolak
    matthewwolak committed Aug 20, 2015
    73fe192

Commits on Jul 23, 2015

  1. Update NEWS.md

    @matthewwolak
    matthewwolak committed Jul 23, 2015
    b6541d2

  2. Update NEWS.md

    @matthewwolak
    matthewwolak committed Jul 23, 2015
    997761e

Commits on Jul 21, 2015

  1. update nadiv-package.Rd date

    @matthewwolak
    matthewwolak committed Jul 21, 2015
    27fa90c

  2. update DESCRIPTION date

    @matthewwolak
    matthewwolak committed Jul 21, 2015
    4a6d42c

  3. Update cran-comments.md

    @matthewwolak
    matthewwolak committed Jul 21, 2015
    f782c5b

  4. update makeAinv.R 

      - f returns genetic group f (0) if pedigree type A.
  - also returns correct order (if pedigree re-ordered to put Full-Sibs next to one another at the beginning)
    @matthewwolak
    matthewwolak committed Jul 21, 2015
    912657d

  5. update makeAinv.Rd f returning genetic group fs

    @matthewwolak
    matthewwolak committed Jul 21, 2015
    43c798a
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