The TimeScales framework
This is the README of the TimeScales framework, which is used to run a Multiscale Model of the Medium Spiny Neuron of the Neostriatum, integrating electrical signalling with biochemical pathways.
The main script to launch the simulation is spinesIntegration.py, which accepts a certain amount of parameters (described in the source code).
The code is licensed under BSD.
Mattioni M, Le Novère N (2013) Integration of Biochemical and Electrical Signaling-Multiscale Model of the Medium Spiny Neuron of the Striatum. PLoS ONE 8(7): e66811. doi:10.1371/journal.pone.0066811
The paper is online at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0066811
The documentation has been moved here: http://michelemattioni.me/TimeScales/