A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment
Python
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README.rst

Neuronvisio

Documentation Status

What is it

Neuronvisio is a Graphical User Interface for NEURON simulator environment. Neuronvisio connect with NEURON using the new python NEURON interface.

Features

  • 3D visualization of the model with the possibility to change it runtime
  • Creation of vectors to record any variables present in the section
  • Pylab integration to plot directly the result of the simulation
  • Exploration of the timecourse of any variable among time using a color coded scale
  • the GUI runs in its own thread so it's possible to use the console (integrated with IPython)
  • automatically download and load models from ModelDB

More info are available on the homepage: http://neuronvisio.org

Offline Documentation

To create offline documentation similar to the one online you will need sphinx http://sphinx.pocoo.org/ installed.

Move in the doc directory:

cd docs

and then launch:

make html

In the _build/html directory you will have the online doc.

How To release

  1. Update Changelog

  2. Change version at neuronvisio/__init__.py

  3. Change to same version in conda.recipe/meta.yaml

  4. Commit everything

  5. Tag repo

    python setup.py tag

  6. Upload to pipy and anaconda.org
    • PiPy:

      python setup.py make_release

    • Anaconda.org:

      Got to anaconda.org and click on the website so the last build will be uploaded to the channel.