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Loading a NeuroML Network does not work properly #50
Neuronvisio uses the NEURON readxml parser to load NeuroML file and does not deal with it directly.
Single Cell works ok, however Network doesn't. Check the example @ https://github.com/mattions/neuronvisio/blob/master/examples/cerebellum_network/NeuroML/Ex6_Cerebellum_networks.xml where there is a NeuroML Network file version 1.8
The plan is to switch to https://github.com/NeuralEnsemble/libNeuroML and NeuroML 2.0 when ready, in the mean-time we still using NEURON.
This issue is more to highlight the problem and keep track of it. It should live in the NEURON Issue tracker, but they don't have one.
I'll try to raise this in the NEURON forum and put the link here and get Padraig (@pgleeson) attention on this one
Haven't forgotten about this, am looking into the various NeuroML import
On 06/07/12 15:00, Michele Mattioni wrote:
+44 207 679 3214
Regarding the issue with loading NeuroML cells into NEURON version 7.2, the API hasn't really changed much, it's just that the neuron.neuroml (containing rdxml.py etc.) wasn't included in setup.py. This can be fixed with something like:
This has been fixed in the latest version of setup.py in the mercurial repo, and the xml files can successfully load with test.py here:
There are some remaining issues with that import, which I'll have to look in to, but I will get any updates integrated into Mike Hines' main branch