From 136b78ec6832ad0451619e6ccf0e4f30135ba3a2 Mon Sep 17 00:00:00 2001
From: maxemil <max-emil.schon@icm.uu.se>
Date: Wed, 26 Jun 2019 10:51:35 +0200
Subject: [PATCH] divide copy number with extinction probability

---
 src/undated.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/undated.cpp b/src/undated.cpp
index 14f0f40..b62c0e7 100644
--- a/src/undated.cpp
+++ b/src/undated.cpp
@@ -1051,7 +1051,7 @@ string exODT_model::counts_string_undated(scalar_type samples)
     << branch_counts["Ls"][e]/samples << "\t"
     << branch_counts["Os"][e]/samples << "\t"
     //<< branch_counts["singleton"][e]/samples << "\t"
-    << branch_counts["copies"][e]/samples << "\n";
+    << branch_counts["copies"][e]/samples/(1-uE[e]) << "\n";
     else
     out<< "S_terminal_branch\t"<< named_branch.str() << "\t"
     << branch_counts["Ds"][e]/samples << "\t"