v1.11.0

• Add domrefine option -h to use homcluster in domrefine_stepwise_merge
• Shuffle the order of cluster pairs before merge_divide

v1.10.3

• Fix for reading preclust file correctly

v1.10.2

Fix log messages for dom_concat_domains

v1.10.1

Fix domrefine.pipeline.pl to prepare for DOMREFINE_BLASTDBCMD

v1.10.0

• Add domrefine -S option to set DOMREFINE_ALLOW_SPACING

v1.9.2

• Fix pm/DomRefine/Read.pm for makeblastdb

v1.9.1

• Fix o11_to_files.pl for HomCluster without scores

v1.9.0

• Add domrefine -P option for preclust_info
• Use preclust_info in dom_divide_test
• Add domrefine -Q local
• Include dsp_score-1.1.0 binary in lib/

v1.8.0

• Add famsa as a aligner
• Add domrefine -I option for homology_info
• Add domrefine -B option to set DOMREFINE_BLASTDBCMD true and use makeblastdb and blastdbcmd in Read.pm::read_seq
• Add domrefine -R option to align by region

v1.7.0

• Support not only SGE but also PBS