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211 followers · 53 following
  • University of Melbourne | Doherty Institute
  • Sunshine Coast, Australia

Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor
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Highlights

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Organizations

@rust-bio @iqbal-lab-org @Snakemake-Profiles @snakemake @Mykrobe-tools
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Pinned

  1. rasusa rasusa Public

    Randomly subsample sequencing reads to a specified coverage

    Rust 164 16

  2. snakemake/snakefmt snakemake/snakefmt Public

    The uncompromising Snakemake code formatter

    Python 132 24

  3. ssubmit ssubmit Public

    Submit slurm sbatch jobs without the need to create a script

    Rust 58 5

  4. pafpy pafpy Public

    A lightweight library for working with PAF (Pairwise mApping Format) files

    Python 31 3

  5. compression_benchmark compression_benchmark Public

    Benchmarking fastq compression with generic (mature) compression algorithms

    Python 19 4

  6. drprg drprg Public

    Drug Resistance Prediction with Reference Graphs

    Rust 19 1

859 contributions in the last year

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Activity overview

Contributed to mbhall88/classification_benchmark, mbhall88/drprg, snakemake/snakefmt and 71 other repositories
A graph representing mbhall88's contributions from February 19, 2023 to February 20, 2024. The contributions are 84% commits, 7% issues, 5% pull requests, 4% code review.

Contribution activity

February 2024

Created 12 commits in 4 repositories
Created 1 repository
  • mbhall88/cud Python
    This contribution was made on Feb 7

Created a pull request in mbhall88/ontime that received 1 comment

chore(main): release 0.3.0

🤖 I have created a release beep boop 0.3.0 (2024-02-06) Features support SAM/BAM [#6] (#7) (9112946) This PR was generated with Release Please. …

+9 −2 lines changed • 1 comment
Opened 3 other pull requests in 1 repository
mbhall88/ontime 3 merged
Reviewed 3 pull requests in 2 repositories
bioconda/bioconda-recipes 2 pull requests
snakemake/snakefmt 1 pull request

Created an issue in matplotlib/matplotlib that received 12 comments

[ENH]: Add Universal Color Design categorical palette

Problem Hi, I think the Color Universal Design colorblind-friendly palette would be a great addition to matplotlib. As mentioned in mwaskom/seaborn…

12 comments
Opened 10 other issues in 6 repositories
TimD1/vcfdist 4 closed
nanoporetech/rerio 2 closed
samtools/bcftools 1 closed
freebayes/freebayes 1 open
mwaskom/seaborn 1 closed
WGLab/NanoCaller 1 open
24 contributions in private repositories Feb 1 – Feb 20

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