diff --git a/init-env.sh b/init-env.sh index 9a74c96..4bb7249 100644 --- a/init-env.sh +++ b/init-env.sh @@ -11,7 +11,7 @@ show_help() { echo " --help/-h: Show this help message." } -initialize_r() { +initialise_r() { if [ "$FORCE" = true ] || [ ! -f "renv.lock" ]; then Rscript -e 'renv::init(bare = FALSE)' Rscript -e 'renv::install("rmarkdown")' @@ -19,16 +19,16 @@ initialize_r() { fi } -initialize_python() { +initialise_python() { if [ "$FORCE" = true ] || [ ! -f "requirements.txt" ]; then python3 -m venv .venv source .venv/bin/activate - python3 -m pip install jupyter + python3 -m pip install jupyter papermill python3 -m pip freeze > requirements.txt fi } -initialize_julia() { +initialise_julia() { if [ "$FORCE" = true ] || [ ! -f "Project.toml" ]; then julia -e 'using Pkg; Pkg.activate("."); Pkg.instantiate()' julia --project=. -e 'using Pkg; Pkg.add("IJulia")' @@ -62,18 +62,18 @@ done case $WHAT in all) - initialize_r - initialize_python - initialize_julia + initialise_r + initialise_python + initialise_julia ;; r) - initialize_r + initialise_r ;; python) - initialize_python + initialise_python ;; julia) - initialize_julia + initialise_julia ;; *) echo "Unknown option for --what: $WHAT"