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  1. LD-PGTA Public

    Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

    Python 7

  2. rhapsodi Public

    R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.

    R 3

Repositories

  • LD-PGTA Public

    Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

    Python 7 MIT 0 1 0 Updated Sep 23, 2022
  • transmission-distortion Public

    Looking for TD in sperm-seq data

    R 1 0 0 0 Updated Jul 26, 2022
  • rhapsodi Public

    R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.

    R 3 0 0 0 Updated Jul 25, 2022
  • embryo_arrest Public

    Meiotic and mitotic aneuploidies drive preimplantation mortality of in vitro fertilized human embryos

    R 0 MIT 0 0 0 Updated Jul 2, 2022
  • t2t-variants Public

    Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".

    R 6 1 1 0 Updated Apr 1, 2022
  • R 3 1 0 0 Updated Aug 23, 2021
  • aneuploidy_scrnaseq Public

    Detection of aneuploidy using scRNA-seq data from human embryos.

    R 5 2 0 0 Updated Feb 4, 2021
  • sQTLviz Public

    visualising LeafCutter sQTLs by genotype

    R 0 6 0 0 Updated Feb 19, 2019

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