MCell: Monte Carlo Simulator of Cellular Microphysiology
MCell3 Build Requirements:
flex newer than 2.5.6, due to the 'reentrant' option. Extensive testing has been done using Flex 2.5.33.
How To Bootstrap:
When starting from a fresh branch or checkout, cd into ./src and do the following:
How To Build:
To build MCell for Macs or Linux, run the following commands from the main mcell directory:
mkdir build cd build ../src/configure CC=gcc CFLAGS='-O2 -Wall' make
Depending on your needs, you may have to change the build options slightly.
See the Windows Development page on the github wiki for information about building MCell on Windows.
How To Test:
nutmeg is a regression test framework for MCell. Installation and usage instructions are listed on the nutmeg project page.