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fsl_tools
luts
README.md
setup.py

README.md

fsl_tools

A suite of python tools/scripts for more efficient work within the FSL neuroimaging suite

Tools

  • fsf_reporter.py - converts fsf files into an organized csv format
  • run_to_atlas.py - convert "run space" coordinates to standard space, and give atlas information about that point in excel spreadsheet
  • excel_results.py - organize output images from feat reports into a single excel spreadsheet
  • create_config.py - script to create a configuration file for your experiment
  • multithreader.py - using a list of fsfs run several at once, in sequence. Pseudo multithreading because control is by OS
  • mask_to_image.py - overlays a standard space mask on a standard, and then produces a png of overlay

Dependencies by script

Supplementary files

  • fsf_file.py - class for parsing and opening design.fsfs
  • utils.py - supplementary file that holds helper functions for many of the above scripts