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A suite of python tools/scripts for more efficient work within the FSL neuroimaging suite


  • - converts fsf files into an organized csv format
  • - convert "run space" coordinates to standard space, and give atlas information about that point in excel spreadsheet
  • - organize output images from feat reports into a single excel spreadsheet
  • - script to create a configuration file for your experiment
  • - using a list of fsfs run several at once, in sequence. Pseudo multithreading because control is by OS
  • - overlays a standard space mask on a standard, and then produces a png of overlay

Dependencies by script

Supplementary files

  • - class for parsing and opening design.fsfs
  • - supplementary file that holds helper functions for many of the above scripts