/japsa

Just Another JAva Package for Sequence Analysis
  1. Java 99.6%
  2. Other 0.4%
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README.md

Welcome to Japsa

Japsa is a Java Package for Sequence Analysis. As the name implies, Japsa was written primarily in Java. It contains a large number of ready to run programs as well as a Java API.

Installation and Usage

Quick installation guide:

git clone https://github.com/mdcao/japsa
cd japsa
make install \
  [INSTALL_DIR=~/.usr/local \] 
  [MXMEM=7000m \] 
  [SERVER=true \] 
  [JLP=/usr/lib/jni:/usr/lib/R/site-library/rJava/jri]

Details of installation (including for Windows) and usage of Japsa can be found in its documentation hosted on ReadTheDocs

Authors and Contributors

Japsa was maintained by Minh Duc Cao (@mdcao). The following people have contributed to the development of Japsa, including ideas, algorithms, implementation, documentation and feedback:

  • Lachlan Coin
  • Devika Ganesamoorthy
  • Michael Hall
  • Son Hoang Nguyen
  • Mikael Boden
  • Lloyd Allison
  • Trevor I Dix
  • Hoang Anh Nguyen
  • Julia Bernal
  • David Powell

Other projects based on Japsa

and more to come.

License

Japsa is released under the accompanying BSD-like license.