From 8ad9641a4994a224eef3aa225ccd6de9637883b7 Mon Sep 17 00:00:00 2001 From: Minh Duc Cao Date: Sat, 2 May 2015 03:41:25 +1000 Subject: [PATCH] add readme --- README | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 README diff --git a/README b/README new file mode 100644 index 0000000..1711599 --- /dev/null +++ b/README @@ -0,0 +1,37 @@ +Real-time conversion and analysis of Nanopore reads + +I. Windows + +1. Installation: + - Download and install HDF-Java (https://www.hdfgroup.org/products/java/release/download.html) + + - Download either japsa*.tar.gz or japsa*.zip and extract to a directory, e.g., c:\japsa + + - Set up the following environment variables: + a. JSA_HOME to the directory where japsa was installed (e.g., c:\japsa) + b. JHDF5_LIB to the library directory of HDF-Java that contains files jhdf5.dll and jhdf.dll, e.g., C:\Program Files\HDF_Group\HDFView\2.11.0\lib + +2. Running + Run jsa.np.f5readerGUI.bat from either command line or mouse click. On the GUI, enter the directory that the Metricho downloads to, and select output file. + + + + +II. Linux + +1. Installation + - Make sure libjhdf5 was installed + - check out japsa +$git clone https://github.com/mdcao/japsa + +- Compile and install +$cd japsa +$make -f Makefile.main INSTALL_DIR= JLP= + +2. Run +$jsa.np.f5reader --folder -output -GUI + + + + +