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Table 1. Popular collections of bioinformatics resources. Accessed on 2018-11-30

General bioinformatics collections

Name Description URL Stars Watchers Forks
deeplearning-biology A list of deep learning implementations in biology https://github.com/hussius/deeplearning-biology 775 148 198
deep-review A collaboratively written review paper on deep learning genomics and precision medicine https://github.com/greenelab/deep-review 742 120 188
Awesome-Bioinformatics A curated list of awesome Bioinformatics libraries and software https://github.com/danielecook/Awesome-Bioinformatics 583 80 158
awesome Awesome resources on Bioinformatics data science machine learning programming language Python Golang R Perl and miscellaneous stuff https://github.com/shenwei356/awesome 304 21 115
genomicspapers The Leek group guide to genomics papers https://github.com/jtleek/genomicspapers 299 54 134
biotools A list of useful bioinformatics resources https://github.com/jdidion/biotools 205 24 60
getting-started-with-genomics-tools-and-resources Unix R and python tools for genomics https://github.com/crazyhottommy/getting-started-with-genomics-tools-and-resources 157 27 69

Field-specific bioinformatics collections

Name Description URL Stars Watchers Forks
awesome-single-cell List of software packages for single-cell data analysis including RNA-seq ATAC-seq etc https://github.com/seandavi/awesome-single-cell 712 154 303
RNA-seq-analysis RNAseq analysis notes from Ming Tang https://github.com/crazyhottommy/RNA-seq-analysis 260 44 104
ChIP-seq-analysis ChIP-seq analysis notes from Ming Tang https://github.com/crazyhottommy/ChIP-seq-analysis 252 41 136
awesome-cancer-variant-databases A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants https://github.com/seandavi/awesome-cancer-variant-databases 109 23 25
awesome-10x-genomics List of tools and resources related to the 10x Genomics GEMCode/Chromium system https://github.com/johandahlberg/awesome-10x-genomics 63 8 12
DNA-seq-analysis DNA sequencing analysis notes from Ming Tang https://github.com/crazyhottommy/DNA-seq-analysis 53 7 34
awesome-microbes List of computational resources for analyzing microbial sequencing data https://github.com/stevetsa/awesome-microbes 33 5 16
DNA-methylation-analysis DNA methylation analysis notes from Ming Tang https://github.com/crazyhottommy/DNA-methylation-analysis 25 4 22