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Pinned repositories

  1. pyfaidx

    Efficient pythonic random access to fasta subsequences

    Python 105 23

  2. COMBINE-lab/salmon

    Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

    C++ 85 24

  3. fastqp

    Simple FASTQ quality assessment using Python

    Python 33 6

  4. simplesam

    Simple pure Python SAM parser and objects for working with SAM records

    Python 20 2

  5. strandex

    Sample an approximate number of reads from a fastq file without reading the entire file

    Python 6

  6. hamstring

    Tools for generating and decoding error-correcting DNA barcodes

    Python 3 2

145 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

February 2017

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