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Repositories

• TwoPaCo

  A fast constructor of the compressed de Bruijn graph from many genomes

  bioinformatics genomics graph-algorithms comparative-genomics de-bruijn-graphs
  C++ 9 33 5 1 Updated Sep 25, 2020

• SibeliaZ

  A fast whole-genome aligner based on de Bruijn graphs

  bioinformatics genomics graph-algorithms alignment comparative-genomics de-bruijn-graphs whole-genome-alignment
  C++ 6 53 9 0 Updated Sep 17, 2020

• ESSCompress
  C++ 0 3 0 0 Updated Aug 26, 2020

• BubbZ
  C++ 1 12 1 0 Updated Aug 6, 2020

• UST
  C++ GPL-3.0 0 20 0 0 Updated Jul 23, 2020

• varmatch

  robust matching of small variant datasets using flexible scoring schemes
  C++ Apache-2.0 7 8 3 1 Updated Mar 26, 2020

• HowDeSBT

  Sequence Bloom Tree, supporting determined/how split filters
  C++ MIT 2 4 1 0 Updated Oct 14, 2019

• vargeno

  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

  bioinformatics snps algorithms computational-biology data-structures genotyping
  C++ MIT 3 15 3 1 Updated Feb 10, 2019

• internal
  0 0 0 0 Updated Nov 7, 2018

• bloomtree-allsome

  Forked from Kingsford-Group/bloomtree

  Sequence Bloom Trees with All/Some split
  C++ GPL-3.0 14 10 0 0 Updated Oct 30, 2018

• ContigValidator

  Forked from mayankpahadia1993/ContigValidator

  It outputs the alignment of an assembler using simple exact matching and bwa mem
  OpenEdge ABL 3 0 0 0 Updated Oct 15, 2018

• vargeno_lite

  Memory Lite version of VarGeno
  C++ 0 0 0 0 Updated Aug 13, 2018

• SbtPlayData

  Very small examples for testing Sequence Bloom Trees and similar data structures
  0 0 0 0 Updated May 17, 2018

• refpluspipeline
  Java 3 1 0 0 Updated May 25, 2017

• bioinformatics_submission_guides

  Bioinformatics Journal Guides
  0 0 0 0 Updated Nov 21, 2016

• cnfind
  C++ 2 1 11 0 Updated May 31, 2015

• isvda

  iterative small variant detecting algorithm
  Python 1 1 0 0 Updated May 23, 2015

• test

  This is an empty repository for the purposes of figuring out how github works
  0 0 0 0 Updated Mar 7, 2014