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A fast constructor of the compressed de Bruijn graph from many genomes
A fast whole-genome aligner based on de Bruijn graphs
robust matching of small variant datasets using flexible scoring schemes
Sequence Bloom Tree, supporting determined/how split filters
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Sequence Bloom Trees with All/Some split
It outputs the alignment of an assembler using simple exact matching and bwa mem
Memory Lite version of VarGeno
Very small examples for testing Sequence Bloom Trees and similar data structures
Bioinformatics Journal Guides
iterative small variant detecting algorithm
This is an empty repository for the purposes of figuring out how github works