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Dependencies

AmrPlusPlus uses a variety of open-source tools. The tools used, descriptions, and version specifics are provided below.

Bedtools

BWA

Kraken2

RarefactionAnalyzer

ResistomeAnalyzer

Samtools

SNPFinder

Trimmomatic

Freebayes

  • Description: Trimmomatic is a tool for removing low quality base pairs (bps) and adapter sequences from raw sequence data.
  • Version: 1.3.1
  • https://arxiv.org/abs/1207.3907v2

Resistance Gene Identifier