To run AmrPlusPlus, you will need the following libraries and tools installed on your server or local machine.
- Visit this website for further information: https://singularity.lbl.gov/docs-installation
- Java 7+ (Required)
- Nextflow (Required)
NOTE: If you choose not to install Singularity, you will need to download each of the required dependencies and add the executable paths to your .bashrc file to run the pipeline. A list of these dependencies can be found in the Dependencies section of this document.