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Commits on Sep 27, 2011
  1. @dormando

    Add binary GATK/GATKQ

    dormando committed
    Apparently nothing tests GETK/GETKQ, so tests still have to be added.
    1.6 doesn't have GATK/GATKQ because the membase folks didn't need it. I'm
    adding them for completeness and because I don't want to argue about why
    people can't have it. If you're reading this, please use opaques :)
  2. @dormando

    Backport binary TOUCH/GAT/GATQ commands

    dormando committed
    Taken from the 1.6 branch, partly written by Trond. I hope the CAS handling is
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