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Rcode
analysis/GSEA
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DESCRIPTION
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ash.Rproj

README.md

Build Status

This repository contains ongoing work on Bayesian FDR and Adaptive Shrinkage. Because the repo was getting rather out of hand I moved the package to its own repo. So: the ashr R package is now here

To install the ashr package first you need to install devtools

install.packages("devtools")
library(devtools)
install_github("stephens999/ashr")

Running Adaptive Shrinkage

The main function in the ashr package is ash. To get minimal help:

> library(ashr)
> ?ash

To get more information download the repository, and look at Rcode/intro.html and Rcode/readme.html

(These html files are generated from Rcode/intro.rmd and Rcode/readme.rmd and can be reproduced using the R package knitr. R studio provides a nice interface to accomplish this. See for example http://jeromyanglim.blogspot.com/2012/05/getting-started-with-r-markdown-knitr.html)

If you are interested in contributing to this project, contact mstephens@uchicago.edu