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Added quince-mode flag
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‎bin/anvi-gen-gene-consensus-sequences‎

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@@ -51,6 +51,10 @@ if __name__ == '__main__':
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groupE.add_argument(*anvio.A('contigs-mode'), **anvio.K('contigs-mode', {'help': "Use this flag to output consensus\
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sequences of contigs, instead of the\
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default, which is genes"}))
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groupE.add_argument(*anvio.A('quince-mode'), **anvio.K('quince-mode', {'help': "Use this flag to output consensus \
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sequences for cases even where there is\
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no variability"}))
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parser.add_argument('--compress-samples', action='store_true', required=False,
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help="Normally all samples with variation will have their own consensus sequence. If this flag\
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is provided, the coverages from each sample of interest will be summed and only a single\

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