Skip to content

Commit 2aeca9d

Browse files
committed
Ordering sample IDs
1 parent ddeb588 commit 2aeca9d

1 file changed

Lines changed: 1 addition & 1 deletion

File tree

‎sandbox/anvi-script-variability-to-vcf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -74,7 +74,7 @@ def main(args):
7474
##########################################################################################################
7575
## FOR KEEPING TRACK OF THE IDS WHILE PRINTING DIRECTLY, not used when dictionary printed
7676
finalVCF = defaultdict(dict)
77-
sampleNames = list(OrderedDict.fromkeys(input_df['sample_id'])) ## To maintain order of the sample
77+
sampleNames = sorted(list(input_df['sample_id'].unique()))
7878
header = ["#CHROM" ,"POS", "ID", "REF", "ALT" ,"QUAL" ,"FILTER", "INFO","FORMAT"]
7979

8080
##################### ADDING ALLELE COLUMNS FOR FINDING GENOTYPE #########################################

0 commit comments

Comments
 (0)