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GGGenome news archive | en

Yuki Naito edited this page May 31, 2024 · 20 revisions

GGGenome (https://GGGenome.dbcls.jp/) news archive:

Date News
2024-05-31 Human genome T2T-CHM13v2.0 (Jan, 2022) is available.
2024-05-31 Database updated to DDBJ rel. 133.0 (Dec, 2023).
2024-05-30 Database updated to RefSeq rel. 224 (May, 2024).
2024-05-04 Database updated to RefSeq rel. 223 (Mar, 2024).
2024-05-04 Database updated to RIKEN D3G 24.03 (Mar, 2024).
2024-03-25 Database updated to RefSeq rel. 222 (Jan, 2024).
2023-12-31 Database updated to RefSeq rel. 221 (Nov, 2023).
2023-10-05 Database updated to RefSeq rel. 220 (Sep, 2023).
2023-08-24 Database updated to RefSeq rel. 219 (Jul, 2023).
2023-05-18 Database updated to RefSeq rel. 218 (May, 2023).
2023-05-18 Database updated to RefSeq rel. 217 (Mar, 2023).
2023-03-31 Database updated to RIKEN D3G 23.02 (Feb, 2023).
2023-03-17 Database updated to RefSeq rel. 216 (Jan, 2023).
2022-12-28 Database updated to RefSeq rel. 215 (Nov, 2022).
2022-10-27 Database updated to RefSeq rel. 214 (Sep, 2022).
2022-09-08 Database updated to RefSeq rel. 213 (Jul, 2022).
2022-06-03 Database updated to RefSeq rel. 212 (May, 2022).
2022-06-03 Database updated to RefSeq rel. 211 (Mar, 2022).
2022-05-24 Database updated to DDBJ rel. 125.0 (Dec, 2021).
2022-04-12 Database updated to RIKEN D3G 22.02 (Feb, 2022).
2022-04-06 Database updated to RefSeq rel. 210 (Jan, 2022).
2022-04-06 Database updated to RefSeq rel. 209 (Nov, 2021).
2022-04-06 Database updated to RefSeq rel. 208 (Sep, 2021).
2021-08-16 Database updated to RefSeq rel. 207 (Jul, 2021).
2021-06-08 Database updated to RefSeq rel. 206 (May, 2021).
2021-05-10 The new logo for GGGenome is out.
2021-03-28 Database updated to RefSeq rel. 205 (Mar, 2021).
2021-03-28 Databases updated to GENCODE human 37 (Feb, 2021) and
mouse M26 (Feb, 2021).
2021-03-28 Database updated to DDBJ rel. 122.0 (Jan, 2021).
2021-02-17 Databases updated to GENCODE human 36 (Oct, 2020).
2021-02-04 Database updated to RIKEN D3G 21.01 (Jan, 2021).
2021-02-04 Database updated to RefSeq rel. 204 (Jan, 2021).
2020-12-07 Database updated to RefSeq rel. 203 (Nov, 2020).
2020-11-07 Mouse genome GRCm39/mm39 (Jun, 2020) is available.
2020-11-07 Database updated to RefSeq rel. 202 (Sep, 2020).
2020-09-09 Database updated to DDBJ rel. 120.0 (Jun, 2020).
2020-08-11 Database updated to RefSeq rel. 201 (Jul, 2020).
2020-07-15 Databases updated to GENCODE human 34 (Apr, 2020) and
mouse M25 (Apr, 2020).
2020-05-27 Database updated to RefSeq rel. 200 (May, 2020).
2020-04-20 Database updated to DDBJ rel. 119.0 (Mar, 2020).
2020-03-30 D3G 20.03, pre-spliced & spliced RNA database from RIKEN is available.
2020-03-29 Database updated to RefSeq rel. 99 (Mar, 2020).
2020-03-21 SARS-CoV-2 (SARS coronavirus 2) genome is available - Update history
2020-03-21 Human Japanese Reference Genome JG1 is available.
2020-03-21 Databases updated to GENCODE human 33 (Jan, 2020) and
mouse M24 (Jan, 2020).
2020-03-21 Database updated to RefSeq rel. 98 (Jan, 2020).
2020-03-18 Database updated to DDBJ rel. 118.0 (Jan, 2020).
2019-11-29 Database updated to RefSeq rel. 97 (Nov, 2019).
2019-11-10 Database updated to DDBJ rel. 117.0 (Oct, 2019).
2019-09-25 Database updated to RefSeq rel. 96 (Sep, 2019).
2019-07-31 Database updated to RefSeq rel. 95 (Jul, 2019).
2019-07-30 Database updated to DDBJ rel. 116.0 (Jun, 2019).
2019-06-06 Database updated to RefSeq rel. 94 (May, 2019).
2019-04-03 Database updated to RefSeq rel. 93 (Mar, 2019).
2019-03-06 nogap (no gaps in alignment) option is available.
2019-01-22 Database updated to RefSeq rel. 92 (Jan, 2019).
2019-01-09 Database updated to DDBJ rel. 115.0 (Dec, 2018).
2018-12-13 TXT/CSV/JSON output includes sequence alignment and
numbers of mismatches etc.
2018-12-13 Added 36 genome databases - List
2018-11-21 Database updated to RefSeq rel. 91 (Nov, 2018).
2018-10-10 Database updated to DDBJ rel. 114.0 (Sep, 2018).
2018-09-23 Database updated to RefSeq rel. 90 (Sep, 2018).
2018-08-03 Database updated to RefSeq rel. 89 (Jul, 2018).
2018-07-06 Database updated to DDBJ rel. 113.0 (Jun, 2018).
2018-05-28 Database updated to RefSeq rel. 88 (May, 2018).
2018-04-19 Database updated to DDBJ rel. 112.0 (Apr, 2018).
2018-04-19 Databases updated to GENCODE human 28 (Apr, 2018) and
mouse M17 (Apr, 2018).
2018-04-19 Added 12 genome databases - List
2018-03-22 Database updated to miRBase rel. 22 (Mar, 2018).
2018-03-22 Database updated to RefSeq rel. 87 (Mar, 2018).
2018-01-26 Database updated to RefSeq rel. 86 (Jan, 2018).
2017-12-30 Database updated to DDBJ rel. 111.0 (Dec, 2017).
2017-12-15 Databases updated to GENCODE mouse M16 (Dec, 2017).
2017-12-11 Carrot genome is available.
2017-11-29 376 genomes from CyanoBase are added - List
2017-11-17 Database updated to RefSeq rel. 85 (Nov, 2017).
2017-11-06 Database updated to DDBJ rel. 110.0 (Sep, 2017).
2017-10-17 Added 5 genome databases - List
2017-10-17 Added stem-loop/mature miRNAs from miRBase rel. 21.
2017-10-17 Databases updated to GENCODE human 27 (Aug, 2017) and
mouse M15 (Aug, 2017).
2017-10-09 Database updated to RefSeq rel. 84 (Sep, 2017).
2017-08-07 Database updated to RefSeq rel. 83 (Jul, 2017).
2017-07-03 Database updated to DDBJ rel. 109.0 (May, 2017).
2017-06-15 Added 7 genome databases - List
2017-06-14 Silkworm genome (SilkBase, Nov. 2016) is available.
2017-06-09 Human Japanese Reference Genome JRGv2/decoyJRGv2 are available.
2017-06-09 GENCODE human 26 (Mar, 2017) and
mouse M13 (Mar, 2017) are available.
2017-05-18 Database updated to RefSeq rel. 82 (May, 2017).
2017-04-20 Database updated to DDBJ rel. 108.0 (Mar, 2017).
2017-03-24 Database updated to RefSeq rel. 81 (Mar, 2017).
2017-02-17 Brassica rapa genome v1.5 is available.
2017-02-01 Database updated to DDBJ rel. 107.0 (Jan, 2017).
2017-01-20 Added 8 genome databases - List
2017-01-20 Database updated to RefSeq rel. 80 (Jan, 2017).
2016-11-18 Database updated to RefSeq rel. 79 (Nov, 2016).
2016-10-03 Database updated to DDBJ rel. 106.0 (Sep, 2016).
2016-09-16 Database updated to RefSeq rel. 78 (Sep, 2016).
2016-09-01 Added 10 genome databases - List
2016-08-30 Human Japanese Reference Genome JRGv1/decoyJRGv1 are available.
2016-07-14 Database updated to DDBJ rel. 105.0 (Jun, 2016).
2016-07-12 Database updated to RefSeq rel. 77 (Jul, 2016).
2016-06-13 Added 10 genome databases - List
2016-05-26 Database updated to RefSeq rel. 76 (May, 2016).
2016-04-27 Database updated to DDBJ rel. 104.0 (Mar, 2016).
2016-03-18 Database updated to RefSeq rel. 75 (Mar, 2016).
2016-01-28 Database updated to DDBJ rel. 103.0 (Jan, 2016).
2016-01-25 Database updated to RefSeq rel. 74 (Jan, 2016).
2015-11-11 Database updated to DDBJ rel. 102.0 (Sep, 2015).
2015-11-11 Database updated to RefSeq rel. 73 (Nov, 2015).
2015-09-08 Added 14 genomes from Ensembl.
2015-09-08 Added 35 genomes from EnsemblMetazoa.
2015-09-08 Added 39 genomes from EnsemblPlants.
2015-09-08 Added 23 genomes from Phytozome.
2015-09-07 Database updated to RefSeq rel. 72 (Sep, 2015).
2015-07-22 100+ genome databases are added - List of databases
2015-07-22 Re-installed RefSeq rel. 71 (Jul, 2015).
2015-07-16 Suspended RefSeq rel. 71 due to a data error.
2015-07-15 Database updated to RefSeq rel. 71 (Jul, 2015).
2015-05-28 Database updated to RefSeq rel. 70 (May, 2015).
2015-03-18 Parameter for searching specific strand is supported.
2015-01-13 HTTPS encrypted connection supported - https://GGGenome.dbcls.jp/
2015-01-13 Database updated to RefSeq rel. 69 (Jan, 2015).
2014-11-23 Database updated to RefSeq rel. 68 (Nov, 2014).
2014-10-28 X. laevis and S. pombe genomes are available.
2014-10-01 CSV, BED, GFF outputs are newly supported.
2014-10-01 Sequence containing IUB code letters (N, R, Y, ...) can be queried.
2014-07-17 Marmoset genome is available.
2014-07-17 Database updated to RefSeq rel. 66 (Jul, 2014).
2014-06-02 Pig and Sorghum genomes are available.
2014-05-30 Database updated to RefSeq rel. 65 (May, 2014).
2014-03-17 Database updated to RefSeq rel. 64 (Mar, 2014).
2014-01-24 Database updated to RefSeq rel. 63 (Jan, 2014).
2013-12-25 S. cerevisiae genome is available.
2013-12-18 Database updated to TogoGenome from RefSeq 62 (Nov, 2013).
2013-11-17 Database updated to RefSeq rel. 62 (Nov, 2013).
2013-10-02 Database updated to TogoGenome from RefSeq 60 (Jul, 2013).
2013-09-20 Database updated to RefSeq rel. 61 (Sep, 2013).
2013-08-19 Tips: GGGenome search using Google Spreadsheet.
2013-07-28 Database updated to RefSeq rel. 60 (Jul, 2013).
2013-05-28 Chicken, Xenopus, Zebrafish, Ciona intestinalis
and Arabidopsis genomes are available.
2013-05-21 Database updated to DDBJ rel. 92.0 (Feb, 2013).
2013-05-07 Database updated to RefSeq rel. 59 (May, 2013).
2013-03-28 Database updated to RefSeq rel. 58 (Mar, 2013).
2013-02-26 Search results are also available for download.
2013-02-12 Silkworm genome is available.
2013-02-08 English page has launched.
2013-02-08 Rice genome is available.
2013-02-06 Source code available via GitHub.
2013-01-16 Database updated to RefSeq rel. 57 (Jan, 2013).
2012-12-21 GGGenome REST API is available.
2012-12-21 Rat, Drosophila and C. elegans genomes are available.
2012-11-15 Database updated to RefSeq rel. 56 (Nov, 2012).
2012-07-26 Mouse genome is available.
2012-07-25 Database updated to RefSeq rel. 54 (Jul, 2012).
2012-07-04 GGGenome launched.

Copyright © 2012-2021 Yuki Naito (@meso_cacase) at
Database Center for Life Science (DBCLS), Japan.
Licensed under Creative Commons Attribution 4.0 International License (CC BY 4.0).