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| 1 | ##findSSRs_fastq_rawreads.pl | |
| 2 | This is an older script used to identify SSRs prior to an assembly. No primers are created. It looks through a fastq file. | |
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| 4 | ##findSSRs_fasta.pl | |
| 5 | This is the new and improved SSR and primer calling script that should be used in all other circumstances. | |
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| 7 | ##find_dup_begins.pl | |
| 8 | This script identifies forward and reverse reads with the same beginning bases. This is a problem we identified with some sets of paired end, overlapping (or supposed to be overlapping) reads. Seems limited to that one project. | |
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