Added a readme and another rename to findSSRS_fastq_rawreads.pl to be…

… super clear on usage.
mestato · 248a0fc206226c1cfbde80695f5c9fbcdec914ca · mestato committed Jul 8, 2015 · Jul 8, 2015 · 248a0fc
1 parent 9b89f77
commit 248a0fc206226c1cfbde80695f5c9fbcdec914ca
Unified Split

Showing with 9 additions and 0 deletions.

BIN hwg_gssr_scripts/.find_dup_begins.pl.swp

+9 −0 hwg_gssr_scripts/README.md

0 hwg_gssr_scripts/{findSSRs_fastq.pl → findSSRs_fastq_rawreads.pl}
diff --git a/hwg_gssr_scripts/.find_dup_begins.pl.swp b/hwg_gssr_scripts/.find_dup_begins.pl.swp
diff --git a/hwg_gssr_scripts/README.md b/hwg_gssr_scripts/README.md
@@ -0,0 +1,9 @@
+##findSSRs_fastq_rawreads.pl
+This is an older script used to identify SSRs prior to an assembly. No primers are created. It looks through a fastq file.
+
+##findSSRs_fasta.pl
+This is the new and improved SSR and primer calling script that should be used in all other circumstances.
+
+##find_dup_begins.pl
+This script identifies forward and reverse reads with the same beginning bases. This is a problem we identified with some sets of paired end, overlapping (or supposed to be overlapping) reads. Seems limited to that one project.
+
diff --git a/hwg_gssr_scripts/findSSRs_fastq.pl → hwg_gssr_scripts/findSSRs_fastq_rawreads.pl b/hwg_gssr_scripts/findSSRs_fastq.pl → hwg_gssr_scripts/findSSRs_fastq_rawreads.pl