diff --git a/hwg_gssr_scripts/findSSRs_post_assembly.pl b/hwg_gssr_scripts/findSSRs_post_assembly.pl index 4b9b82c..ab48bbc 100755 --- a/hwg_gssr_scripts/findSSRs_post_assembly.pl +++ b/hwg_gssr_scripts/findSSRs_post_assembly.pl @@ -40,8 +40,8 @@ # A text file of statistics about the SSRs discovered. # # .ssr_report.txt -# A tab-delimited file with each SSR. The columns are sequence name, -# motif, number of repeats, start position, end position, compound (T/F). +# A tab-delimited file with each SSR. The columns are SSR ID, +# motif, number of repeats, start position, end position. # # .ssr_report.xlsx # A excel file with SSR results and stats @@ -50,7 +50,7 @@ # .tri_primer_report.txt # .tetra_primer_report.txt # Tab-delimited files with sequences with a specified SSR motif length. Columns are -# sequence name, motif, start position, end position, left primer, +# SSR ID, motif, number of repeats, start position, end position, left primer, # right primer, left primer Tm, right primer Tm, amplicon size # # Details: @@ -678,7 +678,7 @@ sub create_flat_files{ ##printer headers print OUTS join("\t", "SSR ID", - "motif", "start position", "end position"); + "motif", "number of repeats", "start position", "end position"); print OUTS "\n"; print OUT2 join("\t", "SSR ID", @@ -704,6 +704,7 @@ sub create_flat_files{ print OUTS join("\t", $ssr_id, $SSR_STATS{$ssr_id}{MOTIF}, + $SSR_STATS{$ssr_id}{NO_REPEATS}, $SSR_STATS{$ssr_id}{START}, $SSR_STATS{$ssr_id}{END}, );