diff --git a/hwg_gssr_scripts/findSSRs_post_assembly.pl b/hwg_gssr_scripts/findSSRs_post_assembly.pl index 624757c..9ab96ae 100755 --- a/hwg_gssr_scripts/findSSRs_post_assembly.pl +++ b/hwg_gssr_scripts/findSSRs_post_assembly.pl @@ -252,10 +252,11 @@ sub main{ $tri_primer_out = "$fasta_file.tri_primer_report.txt"; $tetra_primer_out = "$fasta_file.tetra_primer_report.txt"; + ##--------------------------------------------------------------- print "finding SSRs...\n"; open(PI3, ">$p3_input") or die $!; my $p3_input_fh = *PI3; - getContigHash($fasta_file, $masked_file, $ssr_out, $p3_input_fh); + process_file($fasta_file, $masked_file, $ssr_out, $p3_input_fh); close PI3; print "running primer3...\n"; @@ -297,7 +298,7 @@ sub main{ ############################################################### -sub getContigHash{ +sub process_file{ my $fasta_file = $_[0]; # file name my $masked_file = $_[1]; # file name my $ssr_out = $_[2]; # file name