From b70790183a1166b081f092b603a53cf0db396c19 Mon Sep 17 00:00:00 2001 From: mestato Date: Tue, 7 Jul 2015 20:00:57 -0400 Subject: [PATCH] Last little bug - now correctly calculating number of repeats --- hwg_gssr_scripts/findSSRs_post_assembly.pl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/hwg_gssr_scripts/findSSRs_post_assembly.pl b/hwg_gssr_scripts/findSSRs_post_assembly.pl index 0a79492..7a213b0 100755 --- a/hwg_gssr_scripts/findSSRs_post_assembly.pl +++ b/hwg_gssr_scripts/findSSRs_post_assembly.pl @@ -391,7 +391,7 @@ sub process_ssr{ ##------------------------------------- ## generate a few more stats and variables my $motif_len = length $motif; - my $num_of_repeats = ($end_index-$start_index+1)/$motif_len; + my $num_of_repeats = ($end_index-$start_index)/$motif_len; my $ssr_id = $contig_name."_ssr".$start_index; ##-------------------------------------