From 2e17c8b1118e104afe6abf0694cd59c1f705280e Mon Sep 17 00:00:00 2001 From: nkleinbo Date: Mon, 13 Nov 2017 14:54:25 +0100 Subject: [PATCH] Update basecalling.rst --- docs/basecalling.rst | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/docs/basecalling.rst b/docs/basecalling.rst index 5e5231f..5bf144c 100644 --- a/docs/basecalling.rst +++ b/docs/basecalling.rst @@ -195,6 +195,19 @@ To make life easier for future computations, we will merge the fastq files into cat ~/1D_basecall/workspace/pass/*.fastq > ~/1D_basecall.fastq cat ~/1D_2_basecall/1dsq_analysis/workspace/pass/*.fastq > ~/1D_basecall.fastq +Quality statistics with FASTQC +------------------------------ + +Evaluate with fastqc:: + + mkdir ~/www/1D_fastqc + mkdir ~/www/1D2_fastqc + fastqc -o www/fastqc_1D/ <1d.fastq> + fastqc -o www/fastqc_1D2/ <1d2.fastq> + +After that, you can load the reports in your web browser:: + + http://YOUR_OPENSTACK_INSTANCE_IP/quast/summary/report.html