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1 parent ac7daa4 commit 8f1b29002fa2fce7cc71e90f223d350ff05566c3 @baoilleach baoilleach committed Jun 3, 2011
Showing with 7 additions and 7 deletions.
  1. +6 −6 paper.tex
  2. +1 −1 websites.bib
@@ -330,7 +330,7 @@ \section*{Background}
availability of the underlying scientific data, standards (to exchange
data), and code (to reproduce results). All three of these goals stem
from the fundamental tenants of the scientific method for data sharing
-and reproducibilty.
+and reproducibility.
The Blue Obelisk was first described in the CDK News \cite{CDKNewsBO} and
later as a formal paper by Guha et al.\cite{Guha2006} in
@@ -502,7 +502,7 @@ \subsection*{Second-generation tools}
graphical editors while Avogadro is a 3D molecular editor and viewer aimed at
preparing and analysing computational chemistry calculations. Both
projects are designed to be extended or scripted by users through
-the provision of a plugin architective and scripting support (using
+the provision of a plugin architecture and scripting support (using
Bioclipse Scripting Language~\cite{Bioclipse2}, or Python in the case
of Avogadro). An interesting aspect of both Avogadro and Bioclipse is
that they share some developers with the underlying toolkits and this
@@ -527,7 +527,7 @@ \subsection*{Second-generation tools}
\subsection*{Computational chemistry analysis}
-Another area where the Blue Obelisk has had a signficant impact in the
+Another area where the Blue Obelisk has had a significant impact in the
past five years is in supporting
quantum chemistry calculations and in interpreting their results.
Electronic structure calculations have a long tradition in the
@@ -572,7 +572,7 @@ \subsection*{Computational chemistry analysis}
comparison to experimental data. QMForge~\cite{WebQMForge} provides
a GUI for various electronic structure analyses such as Frenking's charge
decomposition analysis~\cite{Frenking} and Mulliken or C-squared analyses
-on user-defined molecular fragments. QMForge also provides a rudamentary
+on user-defined molecular fragments. QMForge also provides a rudimentary
Cartesian coordinate editor allowing molecular structures to be saved via Open Babel.
The Quixote project epitomises the full use of the Blue Obelisk
@@ -742,7 +742,7 @@ \subsection*{The business end}
mechanisms for releasing Open Source software
without violating confidentiality or incurring liability.
A phrase from the meeting
-summed it up: ``The ice is beginning to melt'', signifiying that we can
+summed it up: ``The ice is beginning to melt'', signifying that we can
expect a rapid increase in industry's interest
in Open Source.
@@ -822,7 +822,7 @@ \subsection*{Chemical database software}
literature retrieval), there are many RDF tools
(e.g. SIMILE, Apache Jena) which can operate in machine memory and provide
the flexibility that RDF offers. For larger
-systems, it is unclear whtether complete RDF solutions (e.g. Virtuoso)
+systems, it is unclear whether complete RDF solutions (e.g. Virtuoso)
will be satisfactory or whether a hybrid system
based on name-value pairs (e.g. CouchDB, MongoDB) will be sufficient.
@@ -104,7 +104,7 @@ @webpage{WebOpenData
url = {}
- title = {Crystal Eye},
+ title = {CrystalEye},
url = {}

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