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Before running meteor build, the .meteor-portable does not exist in this directory and meteor npm shrinkwrap works as expected. After running meteor build, this .meteor-portable file causes subsequent shrinkwrapping attempts to fail as this file is not in a npm module directory but is under node_modules
npm ERR! Darwin 15.3.0
npm ERR! argv "node" "/Users/egoldblum/.meteor/packages/meteor-tool/.1.3.4.qz3c1w++os.osx.x86_64+web.browser+web.cordova/mt-os.osx.x86_64/dev_bundle/bin/npm" "shrinkwrap"
npm ERR! node v0.10.45
npm ERR! npm v3.9.6
npm ERR! Problems were encountered
npm ERR! Please correct and try again.
npm ERR! extraneous: undefined /Users/egoldblum/workpop/Workpop-Web/node_modules/@workpop/.meteor-portable
npm ERR! If you need help, you may report this error at:
npm ERR! <https://github.com/npm/npm/issues>
npm ERR! Please include the following file with any support request:
npm ERR! /Users/egoldblum/workpop/Workpop-Web/npm-debug.log
.meteor-portable should not be placed if the directory is not a npm module. Usually top level directories in node_modules are, but not always.